genome.fa.s17.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  125  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39656766--39656894	43	3.0	43	75	6	118	19	17	28	34	1.94
39659509--39659586	36	2.2	36	95	0	138	35	8	16	38	1.80
39670077--39670107	11	2.8	11	95	0	53	19	48	3	29	1.64
39670653--39670745	18	5.2	18	90	0	150	27	24	16	31	1.96
39674799--39674829	11	2.8	11	95	0	53	19	48	3	29	1.64
39676425--39676452	14	2.0	14	100	0	56	7	28	0	64	1.20
39676516--39676544	6	5.0	6	95	4	51	13	0	17	68	1.20
39678127--39678161	17	2.1	17	100	0	70	34	0	0	65	0.93
39678318--39678413	45	2.2	44	83	5	113	35	28	6	30	1.82
39678901--39678974	38	1.9	39	94	2	132	17	13	6	62	1.52
39684653--39684846	50	3.9	50	79	4	178	29	22	25	21	1.99
39693514--39693566	23	2.4	22	76	20	56	9	18	1	69	1.25
39707301--39707386	4	21.8	4	72	9	52	23	8	1	67	1.24
39707301--39707340	21	1.9	21	90	10	64	20	12	0	67	1.22
39707305--39707348	21	2.1	21	83	8	54	20	13	0	65	1.26
39710672--39710723	9	5.6	9	78	21	54	84	3	9	1	0.82
39710677--39710723	18	2.6	18	89	3	67	85	2	10	2	0.78
39710686--39710726	8	5.0	8	88	8	57	85	0	12	2	0.70
39711507--39712002	137	3.6	135	72	8	428	33	16	20	29	1.95
39711750--39712306	96	6.1	88	70	15	238	32	17	20	29	1.96
39711797--39712149	181	2.0	181	91	0	580	31	16	22	30	1.96
39712115--39712308	44	4.2	44	73	10	156	32	19	18	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39712276--39712347	37	1.9	37	85	0	99	30	25	22	22	1.99
39713999--39714053	12	4.4	13	80	15	55	25	3	0	70	1.03
39735736--39735964	50	4.5	50	81	3	215	26	20	28	24	1.99
39741361--39741426	18	3.7	18	93	0	114	33	15	12	39	1.84
39741857--39742095	72	3.3	72	90	1	356	23	6	15	53	1.65
39743382--39743420	21	1.9	20	85	15	53	43	5	20	30	1.73
39744005--39744036	13	2.5	13	89	0	55	37	25	9	28	1.87
39743983--39744036	26	2.0	27	82	10	67	33	27	7	31	1.84
39744156--39744187	14	2.2	15	94	5	57	37	6	0	56	1.25
39744484--39744531	22	2.2	22	85	7	62	31	8	6	54	1.55
39761044--39761114	35	2.0	35	100	0	142	28	11	30	29	1.91
39766321--39766428	55	2.0	55	90	3	173	21	12	14	51	1.74
39768350--39768374	5	5.0	5	100	0	50	40	20	20	20	1.92
39768465--39768490	5	5.2	5	100	0	52	38	19	19	23	1.93
39769403--39769457	9	6.1	9	85	8	76	32	9	12	45	1.74
39771661--39771711	25	2.1	24	85	10	68	21	3	5	68	1.27
39791301--39791365	13	4.7	13	74	20	60	33	0	1	64	1.03
39791308--39791364	3	21.0	3	73	20	54	29	0	1	68	1.00
39792447--39792472	4	6.5	4	100	0	52	23	0	0	76	0.78
39795306--39795420	52	2.2	52	90	3	178	36	17	13	33	1.88
39796252--39796369	36	3.2	38	75	18	106	42	1	2	53	1.24
39796240--39796328	36	2.5	35	81	15	112	46	1	3	49	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39797364--39797430	34	1.9	35	90	3	109	34	8	10	46	1.70
39813382--39813416	17	2.0	18	88	5	54	34	2	22	40	1.69
39815751--39815782	6	5.3	6	100	0	64	84	0	0	15	0.63
39817482--39817544	23	2.7	23	75	22	67	68	3	3	25	1.19
39817501--39817538	8	4.8	8	84	9	51	65	5	0	28	1.14
39817483--39817544	25	2.6	23	78	14	63	69	3	3	24	1.18
39818394--39818605	115	1.8	114	83	6	275	27	25	22	24	2.00
39825461--39825523	27	2.2	29	83	8	76	60	0	1	38	1.07
39828667--39828728	31	2.0	30	84	3	79	43	3	3	50	1.34
39831280--39832272	467	2.1	466	81	2	1154	31	10	26	32	1.89
39832424--39832539	57	2.0	57	89	0	178	40	14	8	36	1.77
39842145--39842543	199	2.0	199	99	0	789	31	19	15	33	1.93
39844931--39844971	23	1.9	21	85	14	57	19	4	7	68	1.32
39851137--39851485	138	2.5	138	82	0	401	32	15	22	30	1.94
39851354--39852009	44	14.1	44	64	18	159	32	19	19	27	1.96
39851137--39851544	138	3.0	138	80	1	388	32	15	21	30	1.94
39851364--39852042	94	7.2	93	81	4	616	32	19	19	28	1.96
39851554--39852044	187	2.6	188	84	3	623	32	20	19	27	1.96
39851982--39852096	50	2.3	50	92	0	194	30	20	20	28	1.98
39851889--39852185	144	2.1	144	80	4	321	33	19	19	27	1.96
39869444--39869468	9	2.8	9	100	0	50	16	0	0	84	0.63
39872173--39872217	18	2.5	18	100	0	90	0	57	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39873355--39873420	34	1.9	34	90	3	105	42	15	10	31	1.81
39873498--39873547	24	2.1	24	100	0	100	50	12	12	26	1.74
39875958--39876000	18	2.4	18	84	0	59	32	2	2	62	1.20
39876102--39876150	25	2.0	25	87	0	71	51	4	4	40	1.40
39877584--39877652	32	2.2	32	86	2	95	55	4	4	36	1.40
39878213--39878263	26	2.0	27	81	14	63	68	0	1	29	1.00
39887021--39887058	19	2.1	18	85	14	51	36	0	10	52	1.36
39887745--39887804	25	2.5	24	78	10	68	15	23	20	41	1.89
39887797--39887938	25	5.8	24	74	9	126	19	25	19	35	1.95
39887929--39887988	25	2.4	26	80	8	70	28	23	16	31	1.96
39892028--39892125	43	2.2	44	83	1	126	34	23	15	26	1.94
39893420--39893464	19	2.4	19	85	7	56	68	0	2	28	1.01
39897787--39897900	60	1.9	59	84	8	151	46	14	12	26	1.80
39897786--39897948	60	2.8	59	79	11	149	45	14	12	27	1.81
39900388--39900429	21	2.0	21	86	9	59	40	19	19	21	1.92
39900639--39900682	22	2.0	22	86	4	61	38	18	27	15	1.91
39902448--39902535	11	8.4	11	72	18	71	22	31	1	44	1.61
39902449--39902548	51	2.0	51	84	7	132	24	31	1	44	1.61
39904130--39904172	18	2.4	18	88	0	59	18	27	9	44	1.80
39904413--39904460	21	2.3	21	78	7	53	37	39	16	6	1.74
39913045--39913081	15	2.3	17	86	9	51	16	2	2	78	0.98
39913047--39913111	26	2.3	26	82	10	76	15	3	4	76	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39917075--39917116	20	2.1	20	100	0	84	23	28	4	42	1.74
39940633--39940896	40	6.7	40	89	5	360	25	21	27	25	1.99
39940633--39940929	119	2.5	118	81	9	338	26	21	27	25	1.99
39947292--39948243	40	23.8	40	92	0	1589	28	20	28	22	1.98
39947292--39948243	80	11.9	80	98	0	1805	28	20	28	22	1.98
39955230--39955387	68	2.3	68	77	13	153	20	27	15	35	1.94
39956822--39956896	37	2.0	37	92	0	123	14	1	53	30	1.50
39956863--39956925	29	2.2	29	85	5	83	17	1	49	31	1.56
39957137--39958732	133	12.3	133	91	2	2236	28	21	20	29	1.98
39957895--39958732	43	18.9	44	65	17	310	27	22	20	29	1.99
39960940--39960986	19	2.5	20	86	6	62	38	10	25	25	1.88
39962135--39962173	18	2.2	18	85	0	51	48	0	0	51	1.00
39962191--39962236	18	2.5	19	80	13	53	76	6	13	4	1.14
39962249--39962292	14	3.1	14	76	3	52	65	0	29	4	1.12
39965699--39965971	48	5.7	47	78	7	237	21	28	20	29	1.98
39970851--39971940	40	27.3	40	97	0	1905	31	21	22	25	1.98
39991123--39991593	40	11.8	40	98	0	888	30	22	27	20	1.98
39996327--39996510	40	4.7	40	80	11	186	25	21	27	25	2.00
39996327--39996510	79	2.3	81	81	11	213	25	21	27	25	2.00
39996379--39996543	79	2.1	79	81	8	185	26	20	27	25	1.99
39998011--39998051	20	2.1	19	86	4	55	24	12	31	31	1.92
40008639--40008668	13	2.2	14	94	5	53	56	0	6	36	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40008743--40008777	18	1.9	18	88	0	52	45	5	0	48	1.26
40011592--40011634	21	2.0	21	82	13	52	53	6	6	32	1.55
40016239--40016467	92	2.5	92	84	4	302	36	11	20	31	1.88
40024011--40024042	13	2.3	15	89	10	50	62	0	34	3	1.11
40024047--40024076	5	6.0	5	100	0	60	40	0	60	0	0.97
40024439--40024473	16	2.1	17	94	5	63	22	0	2	74	0.95
40027153--40027322	62	2.7	62	79	8	159	50	10	5	33	1.61
40027204--40027322	62	1.9	62	92	0	202	49	10	6	33	1.63
40030554--40030628	27	2.8	27	75	0	78	28	32	21	18	1.97
40031772--40031806	17	2.1	17	89	10	54	31	0	0	68	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203