genome.fa.s17.2.7.7.80.10.50.1000.193.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  193  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61537721--61537776	23	2.4	23	80	11	60	12	7	16	64	1.48
61538057--61538086	12	2.5	12	94	0	51	40	20	3	36	1.69
61539054--61539105	22	2.4	22	74	6	52	30	15	19	34	1.93
61539551--61539580	3	9.7	3	92	7	51	30	3	0	66	1.07
61542037--61542089	21	2.5	21	75	0	61	35	33	1	28	1.68
61544131--61544240	42	2.6	43	82	2	132	32	25	15	26	1.95
61545830--61545889	31	1.9	31	89	0	93	36	11	13	38	1.81
61551056--61551190	42	3.2	40	83	4	135	45	16	18	19	1.85
61559982--61560032	18	2.9	19	72	27	58	31	21	15	31	1.95
61559970--61560058	34	2.6	34	80	7	110	30	22	19	28	1.98
61560132--61560201	29	2.6	29	84	8	85	35	21	14	28	1.92
61561346--61561372	4	6.8	4	100	0	54	51	22	0	25	1.48
61562035--61562136	6	17.5	6	84	6	102	22	19	0	57	1.40
61562037--61562120	23	3.7	23	90	3	116	22	21	0	55	1.43
61562064--61562135	29	2.5	29	86	4	92	23	18	0	58	1.39
61573617--61573694	21	3.7	21	74	16	88	19	47	15	17	1.83
61573639--61573717	22	3.6	22	74	16	92	18	45	17	17	1.86
61573618--61573712	43	2.2	43	98	0	181	20	48	14	16	1.81
61575782--61575864	41	2.0	41	95	0	148	43	14	12	30	1.82
61581235--61581266	16	2.0	16	93	0	55	40	6	12	40	1.68
61582055--61582103	19	2.8	18	82	11	57	75	16	2	6	1.09
61595357--61595568	45	4.8	43	70	10	153	26	27	25	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61595327--61595784	89	5.2	89	90	0	659	27	23	24	24	2.00
61595327--61595784	177	2.6	178	87	1	668	27	23	24	24	2.00
61595637--61595770	44	3.0	44	66	10	119	26	24	25	23	2.00
61601424--61601689	103	2.6	104	90	3	419	19	20	29	29	1.97
61604003--61604050	24	2.0	25	84	12	64	25	10	10	54	1.66
61605835--61606024	95	2.0	97	90	2	303	36	13	17	31	1.89
61615629--61615653	4	6.2	4	100	0	50	0	76	0	24	0.80
61633236--61633261	10	2.6	10	100	0	52	88	0	0	11	0.52
61634468--61634518	26	2.0	26	92	7	86	49	0	3	47	1.20
61634496--61634538	21	2.0	21	90	0	68	39	2	4	53	1.34
61634818--61634851	15	2.3	15	95	5	61	41	0	0	58	0.98
61641709--61641756	24	2.0	24	87	0	69	54	2	12	31	1.49
61658512--61658541	16	1.9	16	93	6	53	46	3	0	50	1.18
61669994--61670040	25	1.9	25	86	4	69	25	0	2	72	0.96
61674273--61674349	35	2.2	35	90	4	120	12	11	33	41	1.80
61684164--61684198	12	2.9	12	95	0	61	8	14	42	34	1.76
61686907--61686970	6	10.2	6	83	9	56	10	0	9	79	0.93
61686911--61686955	18	2.5	18	82	13	65	6	0	13	80	0.91
61688587--61688699	30	3.8	30	85	2	147	30	24	30	14	1.94
61688636--61688689	17	3.4	16	72	27	53	31	29	27	11	1.91
61693949--61695014	131	8.1	131	92	1	1641	26	24	19	30	1.98
61693949--61695014	394	2.7	394	94	1	1787	26	24	19	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61693949--61695014	525	2.0	526	93	0	1841	26	24	19	30	1.98
61694784--61695006	44	5.1	44	69	12	118	26	25	19	28	1.99
61698555--61698643	46	1.9	46	97	0	169	31	29	12	26	1.93
61702978--61703053	21	3.7	21	87	7	120	36	11	10	40	1.76
61702991--61703053	19	3.2	19	93	4	99	38	12	9	39	1.76
61708568--61708629	15	4.3	15	75	19	60	77	8	3	11	1.09
61708602--61708658	22	2.6	21	78	10	60	80	3	8	7	1.00
61708610--61708698	43	2.1	41	82	14	101	78	4	10	6	1.07
61708563--61708671	14	7.1	15	73	19	66	77	6	7	8	1.11
61709468--61709511	21	2.1	21	86	0	61	70	0	13	15	1.17
61709478--61709511	13	2.5	14	90	4	52	70	0	14	14	1.17
61710924--61711076	43	3.5	43	72	4	126	24	26	28	20	1.99
61710835--61711105	88	3.1	88	85	0	344	26	24	26	22	2.00
61711433--61711824	50	7.9	49	70	9	208	32	21	20	25	1.98
61711416--61711896	99	4.8	99	84	2	554	32	21	20	26	1.97
61711416--61711900	199	2.4	198	85	2	623	32	21	20	25	1.97
61711494--61711868	50	7.5	50	71	8	194	32	20	21	25	1.98
61720383--61720419	9	4.1	9	92	0	65	45	13	10	29	1.77
61721445--61721470	5	5.2	5	100	0	52	19	19	19	42	1.90
61723748--61723853	5	21.6	5	86	11	157	57	0	0	42	0.98
61725953--61725985	6	5.5	6	92	0	57	69	12	0	18	1.18
61732298--61732362	25	2.7	23	79	11	67	47	3	1	47	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61733093--61733129	18	2.0	19	89	5	58	45	2	0	51	1.15
61743349--61743428	25	3.2	25	77	18	87	35	23	25	16	1.95
61743349--61743439	24	3.7	25	78	17	84	36	21	25	16	1.94
61743422--61743507	25	3.4	25	88	3	120	37	19	25	17	1.94
61743521--61743579	26	2.3	26	88	2	93	38	23	22	15	1.92
61747041--61747119	37	2.1	37	97	0	149	40	25	10	24	1.86
61749354--61750269	40	22.9	40	99	0	1805	22	30	22	24	1.99
61752084--61752117	12	3.0	12	87	12	54	5	14	0	79	0.91
61756627--61756664	18	2.1	18	90	0	58	10	36	34	18	1.85
61764823--61764868	19	2.5	19	89	10	69	41	4	8	45	1.55
61764906--61764989	42	2.0	42	97	0	159	28	10	14	46	1.78
61769585--61769630	19	2.5	19	89	10	69	41	4	8	45	1.55
61769668--61769751	42	2.0	42	85	0	114	29	11	11	46	1.77
61773376--61773562	51	3.7	49	84	3	223	25	16	26	31	1.97
61773376--61773562	102	1.8	101	89	3	295	25	16	26	31	1.97
61773557--61773651	45	2.1	45	92	0	163	26	18	24	30	1.98
61802790--61803769	46	21.5	46	95	2	1705	34	13	20	32	1.91
61802826--61802895	36	1.9	36	94	0	122	38	14	18	28	1.90
61813364--61813428	19	3.4	18	76	18	60	58	4	3	33	1.34
61813853--61813894	12	2.9	15	77	22	54	23	0	0	76	0.79
61813863--61813923	18	3.3	17	78	17	59	31	1	0	67	1.01
61814346--61814371	4	6.5	4	100	0	52	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61817023--61817108	37	2.5	35	85	9	97	54	8	3	33	1.47
61817037--61817111	37	2.0	37	94	0	132	52	9	4	34	1.53
61819370--61819408	18	2.1	19	90	4	62	33	12	12	41	1.82
61828525--61828569	22	2.0	22	86	0	63	46	13	6	33	1.69
61829188--61829229	12	3.5	12	78	12	50	26	33	23	16	1.96
61829776--61830080	3	102.0	3	99	0	603	66	0	33	0	0.92
61840056--61840175	40	3.0	40	83	0	159	22	20	20	36	1.95
61842282--61842323	21	2.0	21	100	0	84	14	23	0	61	1.32
61851326--61851451	25	5.1	25	75	11	100	26	24	20	28	1.99
61851326--61851451	50	2.5	48	77	8	128	26	24	20	28	1.99
61853963--61854101	49	2.8	49	90	0	215	33	28	13	23	1.93
61855289--61855406	23	5.1	23	85	0	164	28	22	22	26	1.99
61871434--61871475	15	2.7	15	82	10	50	33	2	4	59	1.31
61871464--61871506	23	1.9	22	85	4	59	32	0	6	60	1.23
61873365--61873406	6	6.8	6	97	2	75	52	0	30	16	1.44
61874911--61875037	65	2.0	64	90	4	202	49	15	13	21	1.78
61879110--61879179	28	2.5	28	76	6	70	25	21	21	31	1.98
61885675--61885975	27	11.1	27	79	8	278	44	19	16	18	1.87
61885675--61885975	54	5.6	54	86	2	381	44	19	16	18	1.87
61885675--61885975	81	3.7	81	80	3	356	44	19	16	18	1.87
61891874--61891933	30	2.0	29	93	3	102	45	10	30	13	1.76
61896561--61896662	38	2.7	38	78	1	107	31	24	22	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61899193--61899331	68	2.0	68	90	0	215	39	15	13	31	1.86
61914236--61914283	24	2.0	24	84	8	62	54	0	37	8	1.31
61914855--61914894	10	3.8	10	84	12	53	60	5	0	35	1.19
61923815--61923853	20	2.0	20	85	10	53	17	15	5	61	1.51
61924062--61924247	50	3.6	50	79	4	183	25	27	22	25	2.00
61937410--61937491	25	3.3	23	81	8	83	29	19	26	24	1.98
61943563--61943622	24	2.5	24	83	2	75	38	1	5	55	1.32
61945852--61945901	17	2.9	17	90	0	73	18	26	22	34	1.96
61945847--61945934	35	2.5	35	83	5	97	19	23	22	34	1.97
61945840--61945934	17	5.4	18	74	10	72	21	25	21	32	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203