genome.fa.s17.2.7.7.80.10.50.1000.203.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  203  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65121915--65121942	13	2.2	13	100	0	56	32	14	0	53	1.41
65125043--65125078	6	5.8	6	93	6	63	13	0	2	83	0.76
65125784--65126065	3	94.0	3	100	0	564	33	0	0	66	0.92
65126054--65126105	27	1.9	27	84	7	70	34	13	0	51	1.41
65126549--65127047	110	4.6	110	96	1	898	29	17	19	33	1.94
65128428--65128471	19	2.3	20	84	7	56	27	20	11	40	1.86
65130441--65130500	6	9.7	6	79	12	59	70	10	5	15	1.32
65132729--65132814	45	1.9	45	85	4	120	30	24	20	24	1.99
65132773--65133029	87	2.9	87	82	2	302	28	21	23	26	1.99
65133077--65133755	44	15.6	45	66	12	292	30	17	21	30	1.96
65133164--65133459	87	3.4	87	70	12	282	30	17	21	30	1.97
65133073--65133578	175	2.9	175	93	0	850	30	17	21	30	1.96
65133043--65133285	129	1.9	128	84	3	299	29	18	22	29	1.97
65133427--65133869	129	3.4	129	89	0	643	30	18	20	30	1.96
65133431--65133975	258	2.1	255	79	4	558	29	19	22	28	1.98
65134657--65134692	6	5.8	6	93	6	63	13	0	2	83	0.76
65135389--65135716	3	109.3	3	99	0	647	32	0	0	66	0.94
65135785--65136101	110	2.9	109	84	1	397	30	16	18	34	1.93
65142092--65142130	18	2.1	18	86	13	53	30	5	0	64	1.15
65147460--65147637	27	6.6	27	84	3	205	29	28	15	26	1.96
65147481--65147636	82	1.9	81	88	3	233	29	28	15	26	1.96
65150272--65150306	9	3.9	9	92	0	61	0	22	0	77	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65150278--65150310	15	2.2	15	94	0	57	0	24	0	75	0.80
65153942--65154259	3	106.0	3	100	0	636	66	0	0	33	0.92
65158189--65158271	42	2.0	42	92	0	139	34	19	6	39	1.76
65164655--65164737	42	2.0	42	92	0	139	34	19	6	39	1.76
65177036--65177106	36	2.0	36	83	5	90	49	11	11	28	1.73
65177092--65177124	12	2.8	12	90	0	57	51	15	12	21	1.75
65193047--65193090	6	7.2	6	92	2	52	15	25	0	59	1.37
65193048--65193090	12	3.5	12	87	3	59	16	25	0	58	1.38
65193047--65193089	18	2.3	19	88	4	61	16	25	0	58	1.38
65198150--65198370	40	5.6	40	85	3	232	25	28	21	24	1.99
65198302--65198379	40	1.9	41	82	10	97	26	28	21	23	1.99
65201683--65201728	23	2.0	23	83	8	58	71	0	8	19	1.11
65218239--65218483	60	4.1	60	100	0	490	30	17	14	37	1.89
65229454--65229507	27	2.1	26	93	6	92	7	22	24	46	1.77
65235746--65236189	229	1.9	229	96	0	825	27	14	20	37	1.91
65235961--65238069	647	3.3	646	94	0	3648	29	15	20	34	1.94
65237562--65238536	509	1.9	511	90	1	1571	30	16	20	33	1.94
65238544--65239940	647	2.2	647	91	1	2273	29	14	20	35	1.93
65282279--65282307	13	2.2	13	100	0	58	37	31	17	13	1.89
65282413--65282452	21	1.9	21	84	0	53	52	25	5	17	1.64
65284351--65284391	13	3.2	13	86	10	57	0	21	0	78	0.76
65286911--65287106	57	3.7	54	86	5	240	22	19	13	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65286962--65287103	54	2.8	49	82	10	176	21	19	14	45	1.84
65290459--65290525	35	1.9	35	100	0	134	38	2	7	50	1.46
65294390--65294456	35	1.9	35	100	0	134	50	7	2	38	1.46
65294916--65294982	35	1.9	35	100	0	134	38	2	7	50	1.46
65301197--65301374	27	6.6	27	83	3	205	26	15	28	29	1.96
65301198--65301353	82	1.9	81	88	3	233	26	15	28	29	1.96
65301194--65301374	82	2.2	81	83	2	229	27	15	27	29	1.96
65303448--65303514	28	2.4	28	84	0	80	28	19	25	26	1.99
65306041--65306072	15	2.1	15	94	0	55	68	9	6	15	1.36
65316015--65316057	11	3.8	11	80	17	52	32	2	0	65	1.06
65319573--65319597	9	2.8	9	100	0	50	68	0	0	32	0.90
65325355--65325432	36	2.1	37	95	2	140	37	3	1	57	1.25
65325616--65325670	21	2.5	22	82	8	67	56	5	1	36	1.33
65325662--65325710	17	2.8	17	78	3	53	61	0	0	38	0.96
65338333--65338393	9	6.8	9	96	0	95	22	9	27	39	1.86
65338553--65338577	12	2.1	12	100	0	50	16	24	36	24	1.94
65339334--65339364	6	5.2	6	92	0	53	16	16	3	64	1.42
65351899--65352378	230	2.1	223	80	7	529	38	10	12	39	1.77
65352602--65352648	20	2.3	20	77	0	58	61	2	2	34	1.20
65353408--65353440	12	2.6	13	85	9	50	48	0	0	51	1.00
65353565--65353611	6	7.8	6	83	7	60	53	0	0	46	1.00
65364461--65364644	52	3.3	53	74	18	169	41	4	3	50	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65364534--65364650	62	1.9	59	83	11	148	41	4	5	49	1.44
65369655--65369719	32	2.0	32	91	5	105	27	7	12	52	1.66
65371590--65371626	18	2.1	18	89	0	56	10	0	16	72	1.10
65371656--65371739	41	2.0	42	88	6	127	33	11	2	52	1.51
65383134--65383179	19	2.4	21	82	17	64	63	6	0	30	1.20
65384572--65384602	10	3.1	10	95	0	53	32	29	0	38	1.57
65388449--65388626	27	6.6	27	84	3	205	29	28	15	26	1.96
65388470--65388625	82	1.9	81	88	3	233	29	28	15	26	1.96
65394232--65394262	8	3.9	8	100	0	62	77	9	0	12	0.99
65396554--65396710	40	3.9	40	89	0	242	23	28	21	26	1.99
65396558--65396710	80	1.9	80	94	0	270	23	27	21	27	1.99
65403617--65403730	58	2.0	58	98	0	219	30	17	19	32	1.95
65415393--65415447	27	2.0	27	82	6	67	50	5	0	43	1.25
65418501--65418588	35	2.5	35	85	5	117	39	36	14	9	1.78
65421925--65421955	10	3.1	10	100	0	62	48	0	19	32	1.49
65422151--65422176	13	2.0	13	100	0	52	38	7	23	30	1.83
65425557--65425619	30	2.1	31	85	8	85	38	1	1	58	1.17
65432092--65432206	23	4.9	23	84	3	149	45	6	28	20	1.74
65439639--65439702	23	2.7	23	90	2	101	42	6	28	23	1.78
65441094--65441152	29	2.0	29	96	0	109	28	13	22	35	1.92
65449881--65449927	26	1.9	25	83	12	62	25	21	6	46	1.74
65454351--65454469	25	4.8	25	72	3	89	33	20	26	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65454531--65454614	26	3.3	27	73	8	77	32	20	27	20	1.97
65457970--65458032	31	2.0	31	100	0	126	19	28	22	30	1.98
65465341--65465461	59	2.1	59	88	3	181	31	19	20	28	1.97
65466379--65466575	40	4.9	40	93	0	331	24	29	20	25	1.99
65469065--65469287	39	5.7	40	84	8	239	26	26	21	26	1.99
65469065--65469287	79	2.8	81	81	11	248	26	26	21	26	1.99
65473047--65473115	22	3.0	22	68	15	57	40	27	14	17	1.88
65473248--65473280	16	2.0	17	88	5	50	27	18	3	51	1.60
65477074--65477129	28	2.0	28	96	0	103	39	19	17	23	1.92
65488354--65488474	51	2.4	50	80	5	118	26	15	25	32	1.96
65499242--65499331	47	1.9	47	88	0	135	32	23	14	30	1.94
65503548--65503586	20	2.0	20	90	10	62	15	23	5	56	1.59
65503796--65504030	50	4.6	50	77	4	186	25	27	19	27	1.99
65507078--65507136	30	2.0	30	86	3	84	50	8	6	33	1.59
65515846--65516050	47	4.3	47	86	4	270	26	29	9	33	1.89
65515867--65516044	96	1.9	94	88	4	268	25	30	11	32	1.91
65521771--65521802	10	3.0	11	90	9	57	28	0	37	34	1.57
65532372--65532411	21	1.9	21	84	0	53	25	0	2	72	0.97
65535636--65535665	16	1.9	15	93	6	51	13	0	6	80	0.91
65541299--65541380	41	2.0	42	80	7	96	17	24	26	31	1.97
65543287--65543454	27	6.3	27	76	1	104	19	24	17	38	1.93
65543308--65543454	53	2.7	54	86	1	197	19	24	17	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65543412--65543472	27	2.3	27	85	5	79	18	29	18	34	1.94
65557880--65558056	31	5.7	31	82	0	221	29	9	16	43	1.80
65557884--65558056	93	1.9	92	86	1	247	29	9	17	43	1.81
65563823--65564013	41	4.7	41	90	0	283	20	23	27	28	1.99
65564828--65564906	33	2.4	33	84	0	95	16	5	43	35	1.70
65566990--65567057	31	2.2	31	100	0	136	19	25	8	47	1.78
65568159--65568204	20	2.2	20	92	3	74	30	23	17	28	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203

The End!