genome.fa.s17.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  28  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9452396--9452458	33	2.0	31	81	12	74	28	14	3	53	1.56
9453809--9453870	31	2.0	31	84	6	81	51	3	6	38	1.44
9455748--9455783	17	2.1	17	89	0	54	41	11	22	25	1.86
9456615--9456653	19	2.0	20	90	5	62	74	0	5	20	1.01
9456958--9457004	3	15.7	3	86	0	67	6	29	0	63	1.19
9457551--9457589	21	1.9	21	89	5	62	17	12	10	58	1.61
9468677--9468723	19	2.7	17	81	12	60	74	2	10	12	1.16
9481386--9481450	21	3.2	21	73	18	66	6	49	10	33	1.63
9498908--9498945	20	2.0	20	89	5	60	50	2	0	47	1.15
9504596--9505114	257	2.0	257	92	0	867	33	13	15	37	1.87
9510344--9510581	121	2.0	120	91	4	394	35	4	18	42	1.70
9511615--9511644	11	2.7	11	94	0	51	56	0	6	36	1.26
9512154--9512193	3	13.3	3	100	0	80	0	32	0	67	0.91
9512924--9512967	24	1.9	24	90	9	74	36	0	2	61	1.09
9513064--9513091	9	3.1	9	100	0	56	57	10	0	32	1.33
9513034--9513243	68	3.1	68	94	1	361	45	9	4	40	1.57
9513132--9513159	9	3.1	9	100	0	56	57	10	0	32	1.33
9513232--9513273	16	2.6	16	96	0	75	45	7	0	47	1.30
9513247--9513308	22	2.8	22	87	0	88	48	1	0	50	1.10
9524667--9524702	16	2.2	16	95	0	63	27	0	33	38	1.57
9524674--9524720	16	2.9	16	90	0	67	31	0	34	34	1.58
9524954--9524988	18	2.0	17	88	5	52	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9524969--9525156	61	3.1	61	70	14	199	48	6	1	42	1.39
9524937--9525229	120	2.4	121	94	1	518	49	5	2	42	1.37
9525053--9525104	15	3.6	15	80	12	56	53	1	0	44	1.11
9525170--9525452	91	3.0	93	84	7	317	48	3	3	44	1.35
9525270--9525330	28	2.2	28	85	5	81	50	3	0	45	1.17
9525277--9525420	47	3.1	46	65	23	113	49	4	2	44	1.33
9525245--9525452	91	2.3	90	90	4	326	46	4	3	45	1.39
9525270--9525412	44	3.2	43	68	16	119	48	3	2	46	1.31
9525295--9525433	47	3.0	47	68	17	137	49	4	2	43	1.34
9531024--9531048	6	4.2	6	100	0	50	16	0	16	68	1.22
9531013--9531065	28	1.9	27	84	3	70	22	1	11	64	1.36
9532939--9532979	20	2.0	20	95	0	73	31	2	0	65	1.05
9541967--9542071	42	2.5	43	84	1	122	38	24	15	21	1.92
9552160--9552195	8	4.5	8	96	0	63	69	11	0	19	1.18
9554319--9555082	86	8.9	86	93	1	1241	29	21	23	24	1.99
9554319--9555082	255	3.0	257	91	1	1239	29	21	23	24	1.99
9555075--9555709	44	14.3	43	72	12	288	31	19	22	26	1.98
9555094--9555489	131	3.0	130	75	5	438	30	20	22	26	1.98
9555070--9555481	87	4.7	87	75	7	260	30	19	23	26	1.98
9555272--9555717	229	1.9	229	86	5	634	31	20	21	26	1.98
9559195--9559234	9	4.4	9	93	0	71	27	10	20	42	1.83
9561310--9561420	38	2.9	37	85	5	141	31	12	19	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9561499--9561647	44	3.4	42	84	4	154	24	17	18	38	1.92
9562774--9562806	11	3.0	11	87	12	50	72	0	0	27	0.85
9562774--9562811	19	1.9	19	89	5	58	73	0	0	26	0.83
9567269--9567327	21	2.8	20	80	14	57	54	3	1	40	1.27
9567309--9567407	12	9.4	11	69	25	54	58	0	3	38	1.14
9567319--9567353	18	2.0	18	94	5	63	57	0	2	40	1.14
9567309--9567365	12	5.3	12	76	23	65	56	0	5	38	1.22
9567294--9567372	29	2.6	29	92	8	122	56	0	3	39	1.17
9567287--9567396	30	3.5	31	82	10	127	59	0	2	38	1.12
9567344--9567426	42	2.0	42	92	4	141	60	0	1	38	1.05
9567391--9567437	17	2.8	17	83	0	58	61	0	0	38	0.96
9570707--9570879	88	2.0	87	85	3	231	29	10	21	38	1.88
9582201--9582357	53	3.0	52	86	8	219	44	14	3	37	1.63
9588526--9588580	15	3.9	15	79	13	71	25	32	14	27	1.95
9589682--9589732	20	2.5	21	83	3	68	35	0	0	64	0.94
9594842--9594881	21	1.9	21	84	0	53	30	22	32	15	1.94
9595166--9595252	29	3.0	29	77	1	93	20	29	21	27	1.98
9605454--9605606	70	2.2	70	81	2	171	42	9	19	28	1.83
9609065--9609103	20	2.0	20	94	0	69	51	0	0	48	1.00
9618172--9618204	2	16.5	2	93	0	57	51	3	0	45	1.16
9618789--9618897	41	2.6	41	92	1	173	24	22	28	23	2.00
9622561--9622600	9	4.4	9	83	0	53	47	20	7	25	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9628154--9628199	21	2.1	22	88	4	67	8	10	10	69	1.37
9630750--9631578	415	2.0	415	98	0	1613	33	20	12	32	1.91
9631497--9631620	46	2.8	46	91	3	200	27	22	16	33	1.96
9631497--9631731	37	5.8	45	87	8	207	26	21	15	36	1.93
9631582--9631758	37	4.8	37	95	0	300	26	20	13	38	1.90
9633665--9633702	20	1.9	20	88	0	58	34	18	18	28	1.95
9639906--9639945	12	3.2	12	80	13	53	35	0	0	65	0.93
9639906--9639972	24	2.7	25	80	15	77	35	0	0	64	0.94
9652084--9652139	9	6.8	8	74	13	51	62	1	1	33	1.16
9652084--9652128	17	2.7	17	82	3	56	64	2	0	33	1.06
9652080--9652128	25	2.0	24	92	4	80	59	2	0	38	1.09
9652690--9652731	18	2.3	19	87	4	59	33	14	11	40	1.82
9654403--9654474	16	4.9	16	69	27	52	47	0	1	51	1.09
9654404--9654474	28	2.4	29	78	19	85	47	0	1	50	1.09
9654439--9654479	8	5.0	8	88	5	64	41	0	0	58	0.98
9661765--9661833	29	2.4	29	97	0	129	53	0	8	37	1.32
9661770--9662106	71	4.9	71	92	7	563	49	0	10	39	1.38
9661841--9661904	29	2.2	29	97	0	119	50	0	9	40	1.35
9661870--9662023	42	4.0	40	77	21	177	47	0	11	40	1.40
9661912--9662175	29	8.6	29	82	12	321	50	0	10	39	1.40
9661769--9662168	142	3.0	139	86	13	592	50	0	10	39	1.38
9661983--9662175	29	6.6	29	98	1	350	50	0	10	38	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9662772--9662819	23	2.1	23	85	11	64	45	4	4	45	1.41
9663089--9663141	21	2.5	21	93	0	88	30	39	9	20	1.84
9666316--9666393	31	2.6	29	80	9	93	60	7	7	24	1.51
9677001--9677215	110	2.0	106	85	8	292	27	12	14	45	1.80
9681620--9681669	23	2.2	23	82	7	57	48	0	6	46	1.27
9688663--9688736	3	24.3	3	70	8	51	29	6	4	59	1.42
9702980--9703012	18	1.9	17	88	11	50	42	18	6	33	1.75
9704170--9704254	28	3.0	28	100	0	170	38	7	0	54	1.28
9704462--9704531	4	17.5	4	75	21	67	72	0	27	0	0.84
9704456--9704538	10	8.3	10	77	15	73	71	0	28	0	0.87
9704462--9704538	14	5.2	14	77	14	75	71	0	28	0	0.86
9705395--9705537	27	5.6	25	73	16	125	41	7	2	47	1.46
9705393--9705536	50	2.9	50	83	3	200	42	7	2	47	1.46
9705413--9705507	22	4.0	22	74	12	64	40	7	3	49	1.47
9705537--9705569	17	1.9	17	88	11	50	84	6	3	6	0.84
9709749--9709846	23	4.3	23	90	2	162	31	26	21	20	1.98
9709756--9709844	45	2.0	45	95	0	160	31	26	22	19	1.97
9712017--9712054	18	2.1	18	90	0	58	15	44	5	34	1.69
9712020--9712061	18	2.3	18	83	0	57	21	47	2	28	1.63
9713280--9713334	28	2.0	28	96	0	101	54	0	7	38	1.28
9713282--9713346	28	2.4	28	89	2	96	49	1	10	38	1.47
9721408--9721488	31	2.6	30	81	9	92	41	6	11	40	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9725164--9725202	20	1.9	19	90	10	60	69	0	2	28	1.02
9731691--9731743	9	5.7	9	76	8	52	69	0	0	30	0.88
9731678--9731744	30	2.2	30	92	5	109	65	0	0	34	0.93
9731710--9731754	17	2.6	17	78	0	54	62	0	0	37	0.96
9733885--9733927	16	2.6	17	85	7	54	79	0	0	20	0.74
9734736--9734805	10	6.7	11	67	16	51	32	1	0	65	1.01
9734736--9734805	26	2.7	27	78	13	74	32	1	0	65	1.01
9734744--9734788	16	2.8	16	83	12	65	33	0	0	66	0.92
9737657--9737685	6	4.8	6	100	0	58	51	0	34	13	1.42
9745943--9746005	27	2.3	28	83	2	74	23	6	17	52	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203