genome.fa.s17.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  118  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37322649--37322775	45	2.8	44	80	3	128	35	17	20	26	1.95
37322672--37322797	45	2.8	45	79	4	139	33	15	23	28	1.94
37322768--37322873	44	2.4	45	80	3	108	32	16	22	28	1.96
37328108--37328141	17	1.9	18	88	5	52	5	26	8	58	1.51
37329502--37329540	19	2.1	19	100	0	78	46	15	5	33	1.68
37330539--37330577	18	2.2	18	100	0	78	30	30	28	10	1.90
37337292--37337441	27	5.4	28	91	1	205	28	12	26	33	1.92
37337292--37337441	55	2.7	56	88	3	214	28	12	26	33	1.92
37344193--37344230	19	2.0	19	89	0	58	34	21	7	36	1.82
37344283--37344324	18	2.3	19	83	4	50	35	4	4	54	1.42
37346333--37346379	17	2.7	17	90	3	67	42	4	6	46	1.48
37346763--37346801	20	2.0	20	90	5	62	56	5	7	30	1.49
37349546--37349610	17	3.5	18	77	10	60	58	3	1	36	1.23
37349864--37349893	16	1.9	15	93	6	51	33	10	0	56	1.32
37351767--37351838	20	3.6	20	84	0	81	36	22	31	9	1.87
37355634--37355876	44	5.6	44	76	3	267	26	23	20	29	1.99
37355634--37355879	87	2.8	87	91	0	393	26	23	20	29	1.99
37355474--37355748	131	2.1	130	81	6	322	25	22	21	29	1.99
37356076--37356781	44	16.5	44	73	8	377	27	20	18	33	1.96
37356076--37356781	87	8.2	87	69	9	369	27	20	18	33	1.96
37355981--37356781	44	18.7	42	71	9	363	28	20	18	33	1.96
37355978--37356781	212	3.8	212	90	2	1200	28	20	18	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37374059--37374106	20	2.5	20	86	3	62	35	14	27	22	1.93
37377095--37377127	15	2.2	15	94	0	57	12	24	6	57	1.57
37386330--37386492	9	18.6	9	68	21	55	31	3	2	62	1.25
37386399--37386494	10	9.6	10	68	13	54	30	4	2	63	1.24
37386440--37386485	22	2.0	22	84	12	58	32	2	2	63	1.19
37389231--37389324	41	2.3	41	88	1	143	28	18	26	26	1.98
37393061--37393165	46	2.3	46	84	0	129	36	24	18	20	1.95
37403349--37403415	25	2.7	25	83	0	71	25	22	14	37	1.93
37405355--37405395	16	2.6	16	85	14	59	70	12	0	17	1.16
37405363--37405397	15	2.4	14	86	13	52	71	11	0	17	1.14
37405732--37405862	66	2.0	66	95	0	235	44	13	15	26	1.84
37406605--37406648	23	2.0	22	82	13	54	29	2	2	65	1.16
37406710--37406770	24	2.6	24	89	2	88	34	4	3	57	1.36
37406710--37406790	24	3.5	24	81	5	85	34	6	3	55	1.42
37408199--37408450	131	1.9	131	100	0	504	32	3	17	46	1.65
37408219--37408483	131	2.0	131	88	3	345	33	5	18	42	1.72
37409230--37409268	19	2.1	19	100	0	78	30	33	5	30	1.79
37409293--37410108	3	272.0	3	100	0	1632	66	0	33	0	0.92
37411395--37411420	10	2.6	10	100	0	52	34	7	11	46	1.69
37416061--37416129	27	2.6	27	80	0	84	27	23	14	34	1.94
37418591--37418646	22	2.7	21	74	17	53	37	3	3	55	1.35
37421868--37421938	37	1.9	37	94	0	124	38	32	15	14	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37429955--37429997	22	2.0	22	86	9	61	46	16	0	37	1.47
37431156--37431195	13	3.0	14	82	17	50	40	7	0	52	1.30
37436608--37436641	16	2.1	17	88	5	52	67	2	0	29	1.05
37436830--37436866	18	2.2	18	85	9	51	45	10	2	40	1.53
37440683--37440738	29	2.0	28	85	3	76	48	3	3	44	1.37
37451371--37451424	23	2.5	20	78	21	56	35	22	0	42	1.54
37451461--37451548	44	2.0	45	93	2	151	32	23	15	27	1.95
37451557--37451739	51	3.6	50	78	3	188	31	26	18	24	1.97
37451555--37451739	101	1.8	102	85	3	266	31	26	17	23	1.97
37455858--37455914	22	2.4	24	80	8	64	14	40	7	38	1.73
37463181--37463364	61	3.0	61	93	0	305	23	20	13	42	1.87
37474083--37474336	45	5.7	45	83	4	309	24	23	11	40	1.88
37474083--37474324	89	2.7	90	89	3	362	24	23	12	39	1.89
37475219--37475257	8	4.9	8	90	0	60	38	0	0	61	0.96
37477899--37477932	17	2.1	15	89	10	50	29	0	64	5	1.17
37481256--37481302	24	2.0	24	86	0	67	53	23	10	12	1.70
37485857--37485932	37	2.1	37	92	0	125	19	14	23	42	1.88
37487698--37487801	41	2.6	41	82	1	120	34	23	17	25	1.96
37492781--37492826	22	2.1	22	84	8	58	54	17	0	28	1.43
37496883--37496959	36	2.2	35	86	6	104	37	2	6	53	1.41
37496947--37496999	20	2.9	18	78	18	56	39	1	3	54	1.29
37512317--37512341	13	1.9	13	100	0	50	24	8	20	48	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37512980--37513031	17	3.0	18	77	8	63	71	3	5	19	1.22
37514065--37514105	21	2.0	21	85	9	57	75	0	21	2	0.92
37514068--37514117	24	2.1	23	82	14	57	78	0	18	4	0.91
37517805--37517843	20	1.9	21	89	5	62	35	12	28	23	1.91
37519177--37519232	12	4.4	12	72	18	51	8	21	0	69	1.15
37537600--37537639	21	1.9	21	89	0	62	30	32	2	35	1.71
37540196--37540240	19	2.3	20	84	7	65	77	2	13	6	1.05
37544544--37544599	21	2.7	21	86	5	69	71	0	21	7	1.09
37544555--37544599	15	3.1	14	80	6	54	77	0	17	4	0.92
37546218--37546380	82	2.0	82	89	2	247	33	15	25	26	1.95
37546894--37546956	21	3.0	21	88	2	90	30	3	33	33	1.74
37548036--37548077	10	4.3	10	78	6	50	28	14	23	33	1.94
37556783--37556824	18	2.3	18	80	8	50	40	4	9	45	1.58
37562976--37563013	19	2.0	20	89	5	60	18	31	13	36	1.89
37566941--37566989	19	2.5	20	80	9	57	73	4	18	4	1.15
37566967--37567013	25	1.9	24	83	12	60	68	2	23	6	1.24
37566995--37567035	22	1.9	21	90	5	64	73	2	17	7	1.17
37574459--37574498	18	2.2	18	86	4	53	12	27	0	60	1.33
37575542--37575599	13	4.5	13	87	6	66	17	3	3	75	1.07
37575542--37575584	11	3.7	11	85	11	59	13	2	4	79	1.00
37589262--37589297	13	2.6	15	83	16	51	72	2	19	5	1.17
37590255--37590289	18	1.9	18	94	0	61	54	0	22	22	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37590261--37590299	18	2.2	18	85	0	51	61	0	23	15	1.33
37596382--37596452	35	2.0	35	97	0	133	21	36	12	29	1.90
37596519--37597155	326	2.0	326	82	3	789	21	20	16	41	1.91
37599987--37600026	18	2.2	18	86	4	53	12	27	0	60	1.33
37601805--37602185	58	6.6	58	99	0	744	44	13	8	32	1.75
37615962--37616053	46	2.0	46	93	0	157	33	13	22	30	1.92
37616170--37616266	49	2.0	49	97	0	185	42	13	15	28	1.85
37616276--37616322	23	2.1	23	84	7	62	51	12	4	31	1.59
37626209--37626374	84	2.0	84	90	0	260	14	21	25	38	1.91
37632183--37632324	43	3.2	44	64	15	119	31	18	17	32	1.94
37632166--37632364	90	2.2	90	100	0	398	31	16	16	36	1.90
37634094--37634131	19	2.0	19	100	0	76	36	21	21	21	1.95
37636567--37636751	79	2.3	82	84	7	238	25	27	22	24	2.00
37636548--37636751	40	5.1	40	81	8	229	25	27	22	25	2.00
37640928--37641058	65	2.0	65	95	0	235	22	19	27	30	1.98
37644626--37644663	18	2.1	18	85	9	51	21	2	2	73	1.07
37645557--37645744	94	2.0	94	88	2	279	40	11	21	27	1.87
37648914--37648954	21	2.0	21	85	0	55	26	21	34	17	1.95
37649140--37649219	40	2.0	39	90	2	124	37	11	16	33	1.84
37650440--37650688	50	4.9	50	75	6	182	28	20	28	22	1.99
37654748--37655010	51	5.4	50	84	8	351	27	23	15	33	1.95
37654764--37655017	94	2.6	94	93	4	418	28	22	16	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37667424--37667664	50	4.8	50	96	1	437	29	23	16	30	1.96
37667424--37667660	101	2.4	100	96	0	429	29	23	16	30	1.96
37675660--37675952	131	2.2	131	91	1	462	25	25	20	27	1.99
37675658--37676534	132	6.7	132	87	5	807	28	24	18	28	1.98
37675987--37676462	44	10.8	44	65	11	134	29	23	17	29	1.97
37675874--37676534	132	5.0	132	90	2	990	29	23	18	28	1.98
37675869--37676534	263	2.5	264	90	1	1007	28	24	18	28	1.98
37676535--37676708	87	2.0	88	86	3	244	23	22	24	28	1.99
37678838--37678870	16	2.1	16	94	0	57	3	21	0	75	0.93
37678860--37678966	6	17.8	6	78	5	67	10	6	5	77	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203