genome.fa.s17.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  120  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38019099--38019132	17	2.0	17	88	0	50	8	8	0	82	0.85
38023924--38024058	46	2.9	46	83	2	155	29	25	18	26	1.98
38023916--38024072	46	3.4	45	75	6	138	28	22	18	30	1.97
38036004--38036038	10	3.5	10	92	0	61	60	5	20	14	1.54
38036599--38036882	54	5.3	54	84	3	351	19	15	24	40	1.90
38036598--38036882	81	3.6	81	82	7	350	20	15	24	40	1.90
38036598--38036882	27	10.7	27	82	6	314	20	15	24	40	1.90
38044633--38044673	19	2.2	19	86	8	57	29	9	9	51	1.67
38049787--38050010	112	2.0	112	100	0	448	33	15	16	34	1.90
38054130--38054203	27	2.7	27	81	4	87	36	13	29	20	1.91
38063051--38063352	151	2.0	151	99	0	595	22	21	28	28	1.99
38066578--38066720	40	3.6	40	81	7	157	23	20	28	27	1.99
38067907--38068105	96	2.1	95	86	3	276	33	12	21	33	1.90
38072362--38072406	19	2.3	21	85	11	60	4	17	4	73	1.17
38089654--38089678	10	2.5	10	100	0	50	84	16	0	0	0.63
38090086--38090472	42	9.2	42	83	5	444	22	18	22	36	1.95
38090086--38090472	209	1.8	210	85	2	546	22	18	22	36	1.95
38090924--38090963	19	2.2	18	90	4	62	45	2	2	50	1.28
38101627--38101952	43	7.6	43	80	5	304	27	27	18	26	1.98
38101627--38101952	85	3.8	84	77	4	314	27	27	18	26	1.98
38104200--38104249	24	2.1	24	100	0	100	50	16	4	30	1.63
38105971--38106123	49	3.1	49	60	10	114	32	8	10	48	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38105911--38106198	98	2.9	98	93	1	472	33	10	10	45	1.72
38106250--38106426	98	1.8	98	89	0	282	34	9	10	45	1.71
38106885--38107009	14	8.7	15	76	11	66	35	36	0	27	1.63
38106918--38106956	7	5.4	7	81	6	51	33	46	2	17	1.62
38106919--38106964	22	2.1	22	83	0	56	36	43	2	17	1.61
38106948--38107028	21	3.8	21	71	11	67	39	33	0	27	1.57
38106972--38107023	14	3.6	14	84	5	68	36	34	0	28	1.58
38106975--38107021	15	3.3	15	79	5	53	40	29	0	29	1.57
38107223--38107257	8	4.5	8	92	3	54	45	42	0	11	1.40
38107223--38107286	20	3.0	20	80	13	58	42	40	0	17	1.49
38107771--38107825	25	2.2	25	75	12	60	21	9	7	61	1.50
38107910--38108027	41	2.9	40	87	3	182	28	34	16	20	1.94
38108081--38108214	40	3.4	39	72	7	117	26	23	16	33	1.95
38112605--38113001	40	9.9	40	97	0	731	25	20	29	24	1.99
38122868--38122909	18	2.2	19	87	8	59	61	9	14	14	1.55
38126733--38126763	14	2.2	14	100	0	62	58	0	6	35	1.24
38128644--38128769	28	4.5	28	88	2	173	32	27	12	26	1.93
38132783--38132836	25	2.2	25	83	12	67	55	0	3	40	1.17
38136084--38136123	18	2.2	18	86	4	53	12	27	0	60	1.33
38137180--38137220	14	2.8	15	85	7	57	17	17	2	63	1.42
38137261--38137301	11	3.7	11	86	0	64	17	2	4	75	1.08
38137371--38137925	235	2.4	236	95	0	986	37	12	18	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38139593--38139652	30	2.0	30	90	6	95	46	10	8	35	1.67
38147492--38147521	10	3.0	10	90	0	51	73	0	6	20	1.05
38149118--38149160	18	2.3	19	84	8	61	44	2	0	53	1.13
38149131--38149167	18	2.0	19	94	5	67	48	0	2	48	1.15
38149289--38149335	24	1.9	25	83	12	62	38	19	10	31	1.86
38156479--38156775	50	5.8	50	80	4	265	23	27	20	28	1.99
38165605--38165797	32	6.1	32	83	2	219	37	17	20	23	1.94
38165602--38165795	64	3.1	64	84	3	250	37	18	20	24	1.94
38165605--38165797	96	2.0	95	86	1	269	37	17	20	23	1.94
38165810--38165863	26	2.1	26	92	0	90	35	25	22	16	1.95
38165851--38165914	27	2.4	27	85	12	80	31	23	25	20	1.98
38165980--38166063	24	3.5	24	88	1	116	46	21	5	26	1.74
38165980--38166111	24	5.5	24	79	8	108	43	20	6	28	1.77
38166130--38166439	27	11.5	27	83	0	377	24	24	19	31	1.98
38166428--38166585	27	5.9	26	85	6	194	23	15	17	43	1.87
38166421--38166597	54	3.3	53	82	11	220	23	15	16	43	1.87
38166421--38166598	81	2.2	80	86	6	245	24	15	16	43	1.87
38171977--38172267	50	5.8	50	86	0	393	26	22	30	20	1.98
38173288--38173503	108	2.0	108	99	0	423	18	20	11	49	1.79
38178159--38178332	50	3.5	50	80	0	204	27	22	29	20	1.99
38183467--38183555	45	2.0	45	90	0	142	24	16	23	34	1.95
38189513--38189548	17	2.1	17	94	0	63	22	0	25	52	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38192453--38192498	20	2.3	20	85	7	58	26	15	19	39	1.91
38206659--38206851	50	3.8	50	85	0	251	21	28	22	27	1.99
38211196--38211417	27	8.2	27	86	4	304	41	20	18	19	1.91
38213594--38213628	17	2.0	18	88	5	54	14	25	42	17	1.86
38213776--38213874	27	3.7	26	77	10	101	41	21	9	28	1.83
38214934--38214966	18	1.9	17	88	11	50	42	12	15	30	1.83
38216154--38216237	20	4.1	20	81	6	105	19	26	29	25	1.98
38218786--38218828	14	3.1	14	96	0	77	18	6	2	72	1.19
38220004--38220076	29	2.5	29	95	0	128	45	13	9	31	1.76
38221758--38221981	60	3.7	58	79	7	236	37	13	23	25	1.91
38228190--38228240	26	2.0	26	88	7	77	35	23	25	15	1.94
38228418--38228658	27	9.2	27	83	8	241	16	19	21	41	1.90
38228456--38228650	73	2.6	73	79	9	203	15	19	23	41	1.90
38228429--38228630	100	2.0	100	82	1	244	16	17	23	42	1.89
38228421--38228657	127	1.9	126	85	0	330	16	19	22	41	1.90
38231139--38231224	43	2.0	43	88	4	129	25	22	2	50	1.61
38234526--38234573	24	2.0	24	83	4	60	66	2	6	25	1.26
38234779--38234817	18	2.2	18	86	4	53	56	20	7	15	1.63
38236338--38236385	23	2.1	23	92	0	78	33	20	8	37	1.83
38241083--38241111	15	1.9	15	100	0	58	27	0	0	72	0.85
38262016--38262040	13	1.9	13	100	0	50	8	8	0	84	0.79
38263025--38263081	24	2.4	24	85	5	71	26	19	22	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38263040--38263094	24	2.3	24	83	0	65	30	29	18	21	1.97
38266951--38267116	27	6.2	27	75	10	126	42	20	16	20	1.90
38266951--38267102	80	1.9	80	80	2	180	42	22	15	19	1.88
38277633--38277738	55	1.9	55	90	0	167	44	20	6	28	1.77
38286172--38286238	27	2.4	28	80	11	68	62	1	1	34	1.13
38293742--38293794	25	2.0	27	82	13	67	52	15	7	24	1.68
38303285--38303320	10	3.5	10	85	7	54	77	0	2	19	0.88
38303720--38303776	22	2.6	22	78	10	62	52	3	5	38	1.41
38303783--38303851	22	3.4	21	73	19	65	33	10	0	56	1.33
38304741--38305255	42	12.3	42	85	0	654	37	23	17	21	1.94
38307010--38307077	34	2.0	34	94	0	118	22	19	29	29	1.98
38310300--38310378	37	2.1	37	90	0	122	25	31	18	24	1.98
38310497--38310817	47	6.8	47	94	1	525	28	31	8	31	1.87
38315706--38315763	28	2.1	28	96	0	107	22	17	12	48	1.80
38317235--38317274	12	3.3	13	80	16	50	45	5	30	20	1.72
38318504--38318550	24	1.9	25	86	4	69	38	0	34	27	1.57
38319236--38319651	134	3.1	133	83	6	482	45	20	14	19	1.85
38319239--38319652	27	15.4	27	84	4	426	44	20	14	19	1.86
38320115--38320186	34	2.1	35	82	5	85	26	18	22	33	1.96
38322265--38322307	16	2.4	19	85	14	65	72	4	6	16	1.24
38324586--38324869	140	2.0	142	88	2	430	43	9	5	41	1.60
38325106--38325358	125	2.0	125	97	0	479	35	7	9	47	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38326087--38326153	28	2.4	28	89	0	98	28	14	29	26	1.96
38340264--38340342	40	2.0	40	89	0	122	39	20	18	21	1.93
38340279--38340371	40	2.3	40	83	0	114	38	20	18	22	1.93
38340428--38340511	38	2.2	38	82	4	98	42	11	21	23	1.86
38349337--38349378	12	3.2	13	80	10	50	45	0	0	54	0.99
38349988--38350040	24	2.2	24	96	0	97	41	22	13	22	1.88
38355519--38356010	51	9.7	51	77	3	483	29	26	15	28	1.96
38355528--38356010	102	4.7	102	95	0	806	28	26	15	28	1.96
38356479--38356537	30	1.9	31	86	10	86	27	20	8	44	1.80
38362892--38362982	48	1.9	47	86	2	128	39	26	13	20	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203