genome.fa.s17.2.7.7.80.10.50.1000.198.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  198  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63348968--63349023	21	2.7	23	76	20	61	35	5	0	58	1.21
63369425--63369462	19	2.0	19	89	0	58	31	34	7	26	1.85
63369900--63370103	108	1.9	105	90	3	327	34	18	18	28	1.94
63370890--63370929	3	13.3	3	100	0	80	67	0	0	32	0.91
63371488--63371534	19	2.4	20	82	3	69	78	4	4	12	1.04
63372226--63372567	127	2.7	128	92	1	562	24	21	21	33	1.97
63372279--63372567	44	6.8	42	71	11	180	25	21	21	31	1.98
63372617--63372884	87	3.1	86	88	0	374	25	25	19	29	1.99
63377191--63377233	15	2.9	15	92	0	68	39	11	23	25	1.88
63379095--63379294	108	1.9	106	88	2	301	35	17	18	30	1.93
63379971--63380000	12	2.6	12	94	5	53	56	0	6	36	1.26
63380804--63380841	19	2.0	20	89	5	60	76	2	5	15	1.08
63386869--63386923	13	4.8	12	81	18	64	1	10	9	78	1.05
63386871--63386913	12	3.7	12	87	6	61	2	9	11	76	1.10
63386884--63386958	10	7.4	10	80	14	91	1	9	10	78	1.02
63386869--63386958	9	8.5	11	79	14	84	2	10	11	76	1.10
63387504--63387599	31	3.1	31	95	3	174	45	13	9	31	1.75
63388007--63388144	10	14.2	10	73	13	92	61	0	2	34	1.16
63387990--63388079	30	3.1	29	79	6	101	65	1	1	32	1.07
63388013--63388205	29	6.7	29	70	13	112	60	1	4	33	1.25
63388055--63388193	48	2.9	48	80	8	149	59	2	5	32	1.33
63388037--63388203	67	2.5	66	79	9	176	62	1	4	31	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63388005--63388207	20	10.5	19	66	16	80	60	1	4	33	1.26
63388397--63388460	19	3.3	19	76	4	74	25	3	6	65	1.31
63388427--63388460	10	3.5	10	84	8	52	17	0	8	73	1.08
63388389--63388471	10	8.2	10	73	7	51	25	2	6	66	1.27
63388431--63388492	20	3.0	21	76	6	54	27	0	4	67	1.10
63388476--63388544	27	2.6	26	77	8	77	28	1	2	66	1.14
63388635--63388789	84	1.8	84	86	8	226	32	9	18	40	1.83
63396297--63396323	10	2.7	10	100	0	54	51	7	0	40	1.30
63403422--63403486	34	1.9	34	100	0	130	26	24	18	30	1.98
63404152--63404310	55	2.9	55	80	9	180	32	14	28	24	1.94
63419675--63419707	12	2.8	12	100	0	66	9	24	0	66	1.20
63419713--63419740	12	2.3	12	100	0	56	17	17	7	57	1.62
63419942--63420183	50	4.7	50	80	7	204	22	28	21	27	1.99
63430961--63430986	13	2.0	13	100	0	52	23	0	7	69	1.14
63434373--63434557	75	2.4	75	82	7	219	41	16	15	26	1.88
63435435--63435460	5	5.2	5	100	0	52	19	0	0	80	0.71
63436405--63436429	13	1.9	13	100	0	50	12	16	16	56	1.68
63438549--63438616	20	3.4	20	73	15	68	14	27	20	36	1.92
63438554--63438653	20	5.1	19	67	21	62	13	30	17	40	1.87
63439560--63439591	11	2.9	11	100	0	64	0	9	28	62	1.26
63441426--63441468	22	1.9	22	85	4	59	44	0	0	55	0.99
63441426--63441473	22	2.2	22	81	7	53	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63442861--63442911	11	4.6	11	76	9	50	68	13	13	3	1.34
63442861--63442911	22	2.3	22	93	0	84	68	13	13	3	1.34
63443835--63443863	11	2.5	12	88	11	51	41	0	0	58	0.98
63448593--63448633	21	2.0	21	81	18	50	31	19	26	21	1.97
63452091--63452284	98	2.0	98	88	2	291	33	15	15	34	1.90
63452217--63452394	86	2.1	86	90	0	275	31	17	20	30	1.96
63452301--63452579	124	2.3	124	88	0	398	31	17	19	31	1.95
63452739--63452792	21	2.6	21	84	0	63	24	3	24	48	1.67
63452767--63452806	14	2.9	14	84	0	53	17	5	25	52	1.64
63463786--63463903	9	13.6	9	72	15	70	47	16	1	33	1.57
63463808--63463915	18	6.2	17	67	14	67	47	15	1	35	1.57
63463784--63463903	52	2.3	51	92	4	204	46	16	1	35	1.57
63463847--63463915	36	2.0	34	88	5	102	46	17	1	34	1.57
63474123--63474197	21	3.8	20	73	19	59	25	33	5	36	1.79
63474122--63474204	39	2.2	36	79	12	87	27	33	4	33	1.78
63482279--63482341	26	2.4	27	89	5	94	36	15	11	36	1.84
63483842--63483904	28	2.2	28	88	0	90	22	36	3	38	1.70
63484916--63484986	28	2.5	28	90	2	106	21	39	4	35	1.73
63487756--63487939	41	4.5	41	85	0	242	22	26	15	35	1.94
63487874--63487940	21	3.2	21	72	4	55	20	29	16	32	1.95
63490013--63490172	43	3.7	43	70	7	128	29	15	24	30	1.96
63493008--63493106	50	2.0	50	93	0	171	37	15	31	16	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63493296--63493337	21	2.0	21	85	0	57	38	2	11	47	1.53
63496013--63496055	20	2.2	20	91	0	68	51	16	9	23	1.73
63498311--63498364	26	2.1	26	92	0	90	22	14	22	40	1.90
63500233--63500320	25	3.5	25	71	11	81	23	13	28	34	1.93
63500202--63500316	50	2.3	50	87	3	160	26	13	24	35	1.93
63505314--63505384	35	2.0	35	86	0	97	40	12	19	26	1.88
63509272--63509361	45	2.0	45	95	0	162	35	7	11	45	1.69
63512996--63513043	25	1.9	25	95	0	87	22	18	22	35	1.96
63517559--63517633	39	1.9	39	86	5	107	41	18	22	17	1.90
63519338--63519370	17	1.9	17	93	0	57	63	3	6	27	1.32
63523297--63523333	11	3.4	11	92	0	56	29	43	5	21	1.75
63529430--63529636	25	8.3	26	70	8	83	33	14	16	35	1.89
63529480--63529599	50	2.4	50	84	2	152	35	14	15	34	1.88
63529480--63529636	50	3.1	50	81	3	147	35	12	17	34	1.88
63529479--63529637	75	2.1	75	81	2	176	35	13	16	34	1.88
63533831--63533890	30	2.0	30	83	6	77	25	18	26	30	1.98
63535761--63535865	30	3.4	30	81	2	120	4	20	2	72	1.16
63535749--63535865	6	19.0	6	74	3	99	5	19	2	71	1.18
63538322--63538369	23	2.1	23	96	0	87	50	12	14	22	1.77
63539508--63539577	25	2.8	25	86	2	97	25	24	18	31	1.98
63541475--63541634	45	3.6	45	80	6	162	24	16	23	35	1.95
63541468--63541672	45	4.6	44	77	5	155	25	14	24	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63546212--63546332	59	2.0	60	93	1	208	22	11	24	41	1.87
63547190--63547388	45	4.5	45	79	8	183	25	16	25	32	1.96
63547188--63547388	89	2.2	89	80	4	208	25	15	25	32	1.96
63553735--63553976	9	27.9	9	73	9	141	46	16	4	32	1.67
63553735--63553859	27	4.6	27	89	0	187	50	13	2	33	1.55
63553733--63553859	54	2.4	54	91	0	209	51	13	2	33	1.54
63553930--63553983	7	7.1	7	91	8	72	53	16	0	29	1.43
63553931--63553983	25	2.3	24	87	12	60	52	16	0	30	1.44
63559526--63559583	24	2.6	21	77	15	62	44	17	36	1	1.59
63559541--63559580	12	3.3	12	96	0	71	47	17	32	2	1.61
63559990--63560261	42	6.4	42	86	5	309	25	20	22	30	1.98
63560332--63560374	21	2.0	21	86	0	59	46	25	13	13	1.81
63568928--63569122	98	2.0	98	93	0	336	36	25	10	27	1.89
63570181--63570293	19	5.8	19	91	4	190	37	15	9	38	1.80
63570181--63570292	40	2.8	40	97	2	210	37	14	9	38	1.79
63570174--63570293	59	2.1	56	90	6	188	37	15	9	38	1.79
63570469--63571065	44	13.7	42	72	14	349	27	24	19	28	1.98
63570608--63570922	173	1.8	173	81	8	399	27	25	19	28	1.99
63570459--63570981	217	2.4	217	91	0	839	27	24	19	28	1.98
63570864--63571065	89	2.3	89	100	0	404	27	26	19	27	1.99
63571057--63571445	132	2.9	132	96	0	706	23	25	22	28	1.99
63579289--63579420	19	6.8	19	89	3	210	37	14	10	37	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63579282--63579419	59	2.4	59	90	4	212	37	13	10	38	1.79
63579950--63580001	25	2.1	24	85	7	68	59	9	0	30	1.29
63580999--63581461	232	2.0	232	100	0	926	26	40	0	33	1.56
63582291--63582315	11	2.3	11	100	0	50	72	0	0	28	0.86
63582471--63582498	12	2.3	12	100	0	56	71	0	7	21	1.09
63586169--63586231	24	2.6	24	89	0	99	15	11	34	38	1.83
63590101--63590251	27	5.6	27	87	3	223	40	19	19	19	1.92
63591495--63591527	3	10.7	3	93	6	57	66	0	0	33	0.92
63591550--63591604	23	2.4	23	77	17	60	63	1	0	34	1.05
63592006--63592059	19	2.8	19	94	0	99	37	16	9	37	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203