genome.fa.s17.2.7.7.80.10.50.1000.176.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  176  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55933346--55933448	37	2.8	36	89	2	143	26	33	18	21	1.96
55933589--55933761	48	3.6	48	96	0	319	30	29	5	34	1.81
55933821--55933923	37	2.8	36	89	2	143	26	33	18	21	1.96
55934047--55934296	48	5.2	48	91	0	410	30	27	6	35	1.82
55933288--55934236	475	2.0	475	96	0	1736	29	27	10	32	1.90
55936252--55936353	29	3.6	29	77	7	109	30	31	15	22	1.95
55936225--55936385	57	2.8	57	87	1	216	32	29	16	21	1.95
55936225--55936381	28	5.6	27	75	8	125	32	29	16	21	1.95
55936413--55937466	40	26.4	40	96	1	1731	27	24	21	26	1.99
55938805--55938910	37	2.9	37	89	0	158	23	33	18	24	1.97
55939057--55939910	48	17.7	48	90	4	1310	31	27	6	35	1.82
55939384--55939410	11	2.5	11	100	0	54	37	25	0	37	1.57
55945600--55945757	76	2.1	76	98	0	307	27	24	22	25	1.99
55948390--55948423	15	2.3	15	89	0	50	44	11	32	11	1.77
55957276--55958263	40	24.6	40	97	0	1789	24	29	22	22	1.99
55966595--55966867	40	6.8	40	88	2	368	24	29	21	24	1.99
55966594--55966867	122	2.3	120	87	1	395	24	29	21	24	1.99
55969705--55969758	27	2.0	27	96	0	99	42	27	3	25	1.72
55990547--55990717	49	3.5	49	77	9	213	21	29	19	29	1.98
55990545--55990770	98	2.3	98	100	0	452	21	29	19	29	1.98
55990596--55990766	49	3.5	49	77	9	213	21	29	18	29	1.97
55995348--55995387	21	1.9	21	85	10	55	30	25	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56014365--56014442	38	2.1	38	95	2	140	32	20	15	32	1.94
56015318--56015415	49	2.0	49	95	0	178	21	23	19	35	1.96
56015711--56015775	33	2.0	33	96	0	121	20	32	7	40	1.80
56023979--56024218	38	6.3	38	86	1	327	30	24	22	22	1.99
56023978--56024200	116	1.9	116	88	1	340	29	25	22	21	1.99
56032025--56032074	22	2.1	23	85	10	66	22	4	4	70	1.21
56034612--56034653	23	1.9	21	85	9	57	28	2	11	57	1.47
56034663--56034719	25	2.3	25	96	3	107	42	0	24	33	1.55
56038429--56038599	93	1.8	93	91	0	279	29	28	19	21	1.98
56038424--56038596	46	3.7	46	78	10	190	30	27	19	21	1.98
56041902--56041967	30	2.2	30	91	0	105	22	30	28	18	1.97
56041934--56042051	42	2.8	42	90	0	191	21	28	28	21	1.98
56047053--56047323	48	5.7	46	79	8	169	28	19	28	22	1.98
56047146--56047269	48	2.6	48	94	0	212	29	20	27	22	1.99
56047241--56047416	49	3.6	47	80	5	183	27	19	28	23	1.99
56047198--56047416	98	2.3	96	82	6	246	28	20	27	23	1.99
56051533--56051696	90	1.8	90	81	7	208	26	18	25	29	1.98
56053034--56053084	21	2.4	21	100	0	102	35	11	7	45	1.70
56074696--56074721	11	2.4	11	100	0	52	46	7	19	26	1.77
56076706--56076744	20	2.0	20	100	0	78	35	12	20	30	1.90
56076794--56076939	25	6.0	24	89	5	197	28	20	22	28	1.99
56077133--56077195	31	2.0	31	87	0	90	36	15	22	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56078445--56078615	24	6.9	25	69	11	86	21	25	21	32	1.97
56079104--56079160	26	2.2	26	87	0	78	43	19	21	15	1.87
56081196--56081267	36	2.0	36	97	0	135	18	29	8	44	1.78
56082286--56082338	16	3.3	15	76	10	52	35	11	22	30	1.89
56102569--56102668	49	2.0	50	96	1	184	35	14	5	46	1.66
56105900--56105939	20	2.1	19	85	4	53	50	0	17	32	1.47
56110719--56111026	49	6.5	49	72	9	160	25	29	18	26	1.98
56110911--56111027	46	2.6	45	78	8	112	23	28	18	29	1.98
56111693--56111731	20	2.0	20	85	10	53	35	20	0	43	1.52
56112148--56112204	22	2.4	25	80	13	68	24	3	3	68	1.21
56112149--56112198	24	2.1	24	85	10	68	20	4	4	72	1.18
56114700--56114889	48	3.9	48	73	8	154	25	26	20	27	1.99
56119707--56119760	24	2.2	24	83	6	65	33	7	24	35	1.83
56122105--56122366	39	6.6	39	87	6	320	24	27	22	25	2.00
56122105--56122363	118	2.2	119	83	10	327	24	27	21	25	1.99
56128438--56128556	25	4.8	25	73	7	100	33	21	25	19	1.97
56128495--56128688	26	7.9	24	71	12	110	36	21	25	17	1.94
56128495--56128605	48	2.3	48	81	3	125	32	23	27	17	1.96
56128568--56128616	23	2.1	23	81	7	55	34	20	28	16	1.94
56129690--56129717	13	2.2	13	100	0	56	21	14	0	64	1.29
56132102--56132211	54	2.1	53	87	1	157	19	32	20	27	1.97
56136680--56136740	25	2.4	26	97	2	115	42	9	0	47	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56136881--56136940	4	15.0	4	80	13	61	68	0	31	0	0.90
56136880--56136940	18	3.5	18	80	8	65	67	0	32	0	0.91
56141036--56141076	3	13.7	3	100	0	82	68	31	0	0	0.90
56141322--56141423	27	3.8	26	82	7	123	18	34	22	24	1.96
56141473--56141531	26	2.2	27	93	3	102	50	0	10	38	1.36
56145729--56145759	16	1.9	16	93	0	53	41	0	9	48	1.36
56147651--56147695	23	2.0	23	90	0	72	80	6	11	2	0.99
56148374--56148449	38	2.0	38	100	0	152	34	18	13	34	1.89
56149018--56149132	46	2.6	43	75	18	117	51	2	10	35	1.50
56150783--56150813	16	1.9	16	93	0	53	35	35	0	29	1.58
56153585--56153609	12	2.1	12	100	0	50	32	16	0	52	1.44
56154051--56154096	21	2.4	21	86	13	64	34	8	2	54	1.43
56158290--56158565	139	2.0	139	88	1	410	36	15	21	27	1.93
56159793--56159875	3	27.7	3	92	0	76	56	31	10	1	1.41
56160450--56160546	33	2.8	35	72	20	89	45	3	1	50	1.24
56166996--56167086	45	2.0	45	91	4	148	15	19	6	58	1.59
56178668--56178704	18	2.2	18	85	9	51	40	2	0	56	1.13
56178938--56178980	21	2.0	21	81	0	50	37	2	11	48	1.52
56179238--56179262	9	2.8	9	100	0	50	48	20	8	24	1.76
56181286--56181331	17	2.8	18	84	15	64	28	41	30	0	1.56
56182092--56182125	16	2.1	17	88	5	52	44	2	0	52	1.16
56194196--56194221	5	5.2	5	100	0	52	19	0	0	80	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56196080--56196194	25	4.5	25	80	12	135	25	24	11	39	1.88
56206774--56206830	28	2.0	28	96	0	105	63	10	0	26	1.27
56218843--56218906	31	2.2	29	86	8	85	12	6	4	76	1.13
56219291--56219322	15	2.0	17	88	11	50	53	6	0	40	1.26
56225000--56225051	19	2.7	20	81	6	70	48	15	3	32	1.63
56225000--56225121	20	6.2	20	76	7	115	47	14	4	33	1.63
56225025--56225121	39	2.5	40	77	5	108	48	14	4	32	1.63
56226321--56226380	27	2.2	27	96	0	111	23	26	21	28	1.99
56227329--56227364	19	1.9	18	88	5	54	58	8	0	33	1.28
56230921--56230983	25	2.5	25	82	5	83	19	23	20	36	1.95
56238752--56238816	25	2.6	24	74	13	60	15	30	23	30	1.95
56242113--56242234	60	2.0	60	100	0	244	34	22	11	31	1.90
56243023--56243055	14	2.3	15	90	10	52	0	42	0	57	0.98
56252671--56253217	274	2.0	274	100	0	1094	36	13	14	34	1.86
56258442--56258493	21	2.4	22	81	15	63	38	0	3	57	1.17
56263376--56263417	21	2.0	21	95	0	75	21	33	4	40	1.74
56265912--56265959	17	2.7	19	87	9	66	54	8	10	27	1.63
56265872--56266018	61	2.4	60	84	6	172	47	9	16	26	1.77
56266078--56266117	19	2.2	19	90	4	64	42	7	5	45	1.54
56266558--56266602	21	2.1	21	91	0	72	35	4	11	48	1.59
56266820--56266856	19	1.9	19	88	0	56	70	2	2	24	1.14
56267046--56267088	12	3.7	12	84	12	54	4	9	2	83	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56267068--56267121	27	2.0	26	85	3	72	0	25	0	74	0.83
56267074--56267140	20	3.5	20	76	15	63	1	28	0	70	0.96
56267294--56267347	22	2.6	21	82	5	56	9	11	11	68	1.40
56267604--56267673	30	2.3	30	82	0	86	45	2	18	32	1.64
56267633--56267724	30	3.0	31	72	15	84	43	3	20	32	1.68
56274238--56274307	30	2.4	28	88	4	95	41	15	17	25	1.89
56279671--56279832	41	4.0	41	93	1	254	28	20	28	22	1.99
56279668--56279867	41	4.9	41	89	1	249	30	20	27	22	1.98
56286762--56286786	13	1.9	13	100	0	50	16	16	0	68	1.22
56297724--56297784	29	2.1	30	81	3	70	37	14	8	39	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203