genome.fa.s17.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  95  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29914708--29914767	28	2.1	28	100	0	120	21	10	35	33	1.87
29919987--29920196	40	5.3	39	89	4	242	25	21	27	25	1.99
29919934--29920196	120	2.2	120	82	4	309	25	21	27	25	1.99
29919935--29920231	80	3.7	80	81	6	230	26	21	27	24	1.99
29927937--29928146	40	5.3	39	89	4	242	25	21	27	25	1.99
29927884--29928146	120	2.2	120	82	4	309	25	21	27	25	1.99
29927885--29928181	80	3.7	80	81	6	230	26	21	27	24	1.99
29940772--29940816	19	2.4	19	88	7	65	26	22	6	44	1.77
29944904--29945091	51	3.7	50	85	3	243	30	27	16	25	1.97
29952672--29952711	12	3.4	12	89	3	64	25	37	0	37	1.56
29962083--29962413	32	10.4	32	86	6	440	40	21	20	18	1.92
29962554--29962600	24	2.0	24	86	0	67	48	23	12	14	1.78
29962559--29962608	24	2.1	24	84	0	64	50	24	8	18	1.73
29967616--29967679	26	2.5	26	86	0	92	25	25	20	29	1.99
29969964--29970197	50	4.6	50	79	4	211	27	21	27	23	1.99
29970407--29970455	20	2.5	20	81	15	66	57	6	24	12	1.58
29970656--29970704	20	2.5	20	81	15	66	57	6	24	12	1.58
29970290--29970789	249	2.0	249	99	0	991	40	7	19	31	1.80
29990066--29990096	13	2.4	13	100	0	62	25	16	38	19	1.92
29994857--29994906	26	1.9	26	87	0	73	20	16	22	42	1.89
29998652--29998690	14	2.7	15	88	7	55	17	12	10	58	1.61
30004858--30004903	24	1.9	24	86	0	65	17	32	10	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30010274--30010311	9	4.2	9	100	0	76	34	21	13	31	1.91
30025160--30025191	12	2.6	13	85	14	50	56	6	0	37	1.25
30026140--30026171	12	2.6	13	85	14	50	37	0	6	56	1.25
30030792--30030837	22	2.0	22	84	12	58	56	4	10	28	1.53
30032765--30032833	19	3.5	20	80	5	79	73	1	1	23	0.99
30033697--30033773	30	2.6	30	82	0	100	18	24	27	29	1.98
30035713--30035907	27	7.1	27	90	2	273	19	16	21	42	1.90
30035713--30035907	55	3.6	54	87	5	284	19	16	21	42	1.90
30035713--30035907	82	2.4	82	92	3	313	19	16	21	42	1.90
30043579--30043619	20	2.1	19	86	4	55	48	4	4	41	1.46
30054506--30054539	15	2.4	15	90	9	54	73	0	0	26	0.83
30054508--30054544	19	1.9	19	89	10	58	70	0	0	29	0.88
30054490--30054543	26	2.0	27	86	10	76	70	0	3	25	1.04
30059215--30059286	35	2.1	35	94	0	126	44	13	20	20	1.86
30096360--30096422	15	3.9	17	78	15	55	73	0	7	19	1.08
30096375--30096421	23	2.1	23	88	7	71	74	0	6	19	1.03
30101321--30101354	16	2.1	16	94	0	59	26	2	35	35	1.72
30103562--30103613	20	2.6	20	93	0	86	34	7	11	46	1.69
30103562--30103620	20	2.9	19	90	5	73	32	10	13	44	1.77
30119067--30119251	79	2.3	82	84	7	238	25	27	22	24	2.00
30119048--30119251	40	5.1	40	82	8	238	25	27	22	25	2.00
30127696--30127896	101	2.0	101	95	0	357	23	17	11	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30130166--30130199	15	2.2	16	89	5	52	23	5	17	52	1.66
30136139--30136389	44	5.6	44	69	10	143	29	21	17	31	1.96
30136075--30136333	129	1.9	135	83	6	332	28	20	16	33	1.95
30136139--30136568	181	2.4	180	82	4	535	28	22	17	31	1.96
30136220--30136525	96	3.3	96	72	13	282	29	22	16	31	1.96
30146455--30146530	3	24.3	3	76	12	73	31	3	2	61	1.28
30146480--30146531	25	2.1	25	89	7	79	30	1	0	67	1.02
30146542--30146588	20	2.2	21	85	11	69	36	6	6	51	1.53
30158822--30159276	45	10.1	45	85	0	622	31	16	21	31	1.95
30161038--30161081	3	15.0	3	90	4	72	34	2	0	63	1.07
30161480--30161531	23	2.3	23	83	6	63	44	9	0	46	1.36
30161513--30161602	35	2.6	34	76	16	87	38	12	2	46	1.54
30166225--30166259	15	2.4	15	90	4	54	62	5	0	31	1.18
30173109--30173160	24	2.2	24	89	0	77	55	9	1	32	1.43
30175078--30175130	24	2.2	24	89	0	79	54	9	1	33	1.43
30176798--30176851	19	2.7	22	72	21	64	48	1	0	50	1.11
30192107--30192305	99	2.0	99	95	0	353	38	18	13	30	1.89
30197074--30197102	12	2.3	13	94	5	51	20	6	6	65	1.40
30200232--30200267	15	2.4	15	85	0	54	30	27	16	25	1.97
30200371--30200434	33	1.9	33	100	0	128	31	21	12	34	1.91
30203963--30204187	41	5.5	41	79	2	202	35	14	26	23	1.94
30208014--30208115	50	2.0	50	88	3	152	33	12	18	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30219257--30219418	54	3.0	54	98	0	306	20	19	18	41	1.91
30219840--30219897	29	2.0	29	96	0	107	32	18	20	27	1.97
30221043--30221097	16	3.4	16	78	9	58	32	18	5	43	1.73
30222980--30223024	21	2.1	21	87	0	63	17	24	26	31	1.97
30237363--30237413	21	2.4	21	86	0	66	37	17	41	3	1.68
30237301--30237463	87	1.9	87	92	0	272	41	18	25	14	1.88
30237303--30237493	87	2.2	87	86	1	258	42	17	26	13	1.86
30237812--30238007	43	4.6	43	88	1	295	27	18	29	24	1.98
30239087--30239283	48	4.1	48	81	2	200	21	27	22	27	1.99
30239087--30239264	96	1.9	95	82	4	223	20	28	21	28	1.98
30242228--30242309	42	2.0	42	85	4	112	30	24	14	30	1.95
30244990--30245268	48	5.8	48	93	0	432	23	27	20	28	1.99
30244946--30245268	96	3.4	96	89	1	441	23	27	20	28	1.99
30244950--30245268	144	2.2	144	86	1	442	23	27	20	28	1.99
30247919--30247951	16	2.1	17	88	11	52	51	0	3	45	1.16
30255857--30255893	17	2.1	18	90	5	58	78	0	8	13	0.96
30256503--30256591	42	2.1	42	85	6	119	19	28	26	25	1.99
30257925--30257961	17	2.2	16	90	4	56	2	21	0	75	0.92
30258887--30259215	27	12.3	27	83	5	366	44	16	15	24	1.85
30258887--30259215	53	6.2	53	80	5	344	44	16	15	24	1.85
30258919--30259231	160	2.0	159	83	3	405	44	17	14	24	1.86
30260269--30260648	40	9.5	40	84	0	474	31	16	29	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30260409--30260547	20	6.9	20	62	12	61	34	15	28	21	1.94
30261753--30261920	32	5.3	32	78	0	176	38	18	20	22	1.93
30261766--30261920	64	2.4	64	85	0	202	38	18	21	22	1.94
30261941--30262000	27	2.2	27	85	11	79	35	25	25	15	1.94
30262069--30262202	24	5.6	24	78	8	105	45	20	7	26	1.77
30262081--30262202	48	2.5	48	81	5	149	45	20	7	27	1.77
30265515--30265554	16	2.4	16	87	4	53	75	5	5	15	1.15
30265528--30265561	16	2.1	16	88	0	50	70	5	14	8	1.31
30269129--30269279	50	3.0	50	79	1	131	33	20	16	29	1.95
30276346--30276398	19	3.0	17	78	10	61	39	18	9	32	1.83
30285309--30285355	23	2.0	23	91	0	76	36	10	14	38	1.81
30285330--30285385	16	3.6	16	87	2	87	35	14	12	37	1.84
30287647--30287702	25	2.4	22	78	16	67	23	12	48	16	1.80
30287653--30287706	25	2.2	25	93	0	90	22	12	48	16	1.80
30289113--30289231	27	4.4	27	83	2	132	39	14	21	24	1.91
30289121--30289224	27	3.9	27	85	0	136	38	13	23	25	1.91
30289134--30289251	27	4.4	27	81	10	125	41	13	21	23	1.88
30289203--30289266	27	2.3	27	78	2	65	46	20	12	20	1.82
30328581--30328616	19	1.9	19	94	5	65	61	5	5	27	1.41
30328631--30328677	3	15.7	3	86	0	67	59	0	6	34	1.23
30328631--30328677	12	3.9	12	91	0	76	59	0	6	34	1.23
30330318--30330912	45	13.1	45	85	1	776	30	21	16	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30331724--30331749	13	2.0	13	100	0	52	69	0	7	23	1.14
30331972--30332052	42	1.9	42	87	5	119	23	29	14	32	1.95
30343509--30343545	18	2.1	18	90	5	58	67	5	2	24	1.25
30344122--30344179	8	7.1	8	73	11	55	79	1	3	15	0.95
30345666--30345705	14	2.9	15	82	14	50	47	12	5	35	1.63
30348557--30348631	3	25.3	3	83	2	98	32	4	1	62	1.22
30354370--30354455	40	2.2	40	85	4	111	38	18	27	15	1.91
30370757--30370877	63	1.9	63	91	0	197	34	4	20	39	1.74
30379238--30379315	25	3.2	25	81	5	79	25	26	16	30	1.97
30379255--30379335	25	3.3	24	76	11	67	25	23	18	32	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203