genome.fa.s17.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  138  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43990120--43990158	20	2.0	20	90	10	62	71	7	2	17	1.21
43991057--43991167	44	2.5	44	82	2	134	28	17	22	31	1.96
43990834--43991165	174	1.9	174	86	1	468	28	21	20	29	1.98
43991671--43991765	50	1.9	50	91	4	156	26	27	21	25	1.99
43991809--43991947	45	3.1	45	71	4	129	28	29	18	23	1.98
43991834--43991967	43	3.1	43	69	4	133	26	27	19	26	1.99
43991795--43991967	88	2.0	88	89	0	265	26	27	20	25	1.99
44003943--44003986	21	2.1	21	83	8	54	79	2	4	13	0.98
44004212--44004284	33	2.4	31	86	9	96	63	1	4	31	1.22
44004212--44004260	14	3.3	15	80	8	64	65	2	2	30	1.15
44009246--44009270	13	1.9	13	100	0	50	92	0	8	0	0.40
44012271--44012320	24	2.1	24	100	0	100	36	4	4	56	1.37
44017099--44017190	42	2.2	42	90	0	139	29	6	14	50	1.67
44021617--44021685	26	2.7	26	90	0	111	24	24	28	21	1.99
44032631--44032741	57	1.9	57	100	0	222	34	24	16	25	1.95
44035104--44035743	319	2.0	319	99	0	1262	29	19	22	27	1.98
44039260--44039444	79	2.3	81	82	7	218	24	22	28	24	2.00
44039261--44039444	40	4.6	40	82	9	198	25	22	28	23	2.00
44039313--44039477	79	2.1	79	83	6	201	26	21	27	24	1.99
44041683--44041726	21	2.2	20	84	11	56	52	18	6	22	1.69
44043964--44043989	9	2.9	9	100	0	52	19	0	11	69	1.18
44043984--44044097	39	2.9	39	96	1	203	29	7	13	49	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44044979--44045012	12	2.9	11	87	12	50	58	0	14	26	1.36
44049732--44049803	36	2.0	36	83	0	90	27	20	27	23	1.99
44049906--44050057	39	3.9	39	93	0	243	30	7	11	50	1.67
44054736--44054763	13	2.2	13	100	0	56	42	7	0	50	1.30
44057432--44057617	50	3.7	50	76	7	182	24	17	27	30	1.97
44057630--44057717	45	2.0	45	90	4	142	25	14	23	36	1.93
44058726--44058768	20	2.2	20	100	0	86	41	4	18	34	1.71
44059816--44059861	22	2.0	23	95	4	85	21	28	4	45	1.71
44059956--44060005	24	2.1	24	100	0	100	38	8	12	42	1.71
44065756--44065965	70	3.0	71	82	5	277	30	17	16	35	1.92
44069293--44069418	43	2.9	43	80	15	152	19	34	28	16	1.94
44069398--44070309	43	21.2	44	66	15	181	19	31	29	20	1.97
44069656--44070959	128	10.1	128	72	7	491	19	31	28	19	1.97
44069445--44071018	85	18.4	85	73	8	668	19	31	28	19	1.97
44069805--44069983	93	1.9	93	87	2	261	22	29	27	20	1.99
44069679--44070077	221	1.8	221	84	2	552	20	31	29	19	1.97
44070024--44070427	213	1.9	212	84	3	535	18	32	28	19	1.96
44069900--44071018	43	26.3	43	68	8	561	19	32	28	19	1.96
44069623--44071018	383	3.6	383	76	6	1146	19	31	28	19	1.97
44069945--44070649	298	2.4	298	76	5	651	19	32	28	19	1.97
44070514--44070962	213	2.1	213	82	2	535	19	32	29	19	1.96
44075756--44075916	43	3.7	43	82	0	169	19	27	31	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44075914--44076074	75	2.1	75	86	6	236	25	13	29	31	1.94
44084362--44084433	36	2.0	36	86	2	101	29	26	12	31	1.93
44089488--44089557	36	2.0	35	85	2	95	28	27	10	34	1.89
44095055--44095111	29	2.0	29	92	0	96	33	26	14	26	1.94
44097882--44099028	128	9.0	127	76	6	690	19	30	29	20	1.97
44097616--44098564	85	11.2	85	72	7	396	18	30	29	21	1.97
44097470--44099082	43	37.9	41	68	10	429	19	30	29	20	1.97
44098012--44099094	213	5.1	210	74	9	852	19	30	29	20	1.97
44098119--44098776	297	2.2	298	80	7	730	19	30	29	20	1.97
44097828--44099095	85	14.9	84	70	11	494	19	30	29	20	1.97
44099390--44099559	43	4.0	43	80	3	175	20	32	30	17	1.95
44101434--44101463	14	2.2	13	94	5	51	46	6	20	26	1.75
44104009--44104105	42	2.3	42	90	1	149	25	35	22	16	1.95
44104564--44104731	43	3.9	43	82	6	180	23	35	24	16	1.95
44106899--44107639	43	17.5	42	68	11	233	20	28	29	20	1.98
44106894--44107213	128	2.5	127	80	6	326	21	29	30	19	1.97
44107021--44107640	85	7.3	85	72	4	338	19	28	30	21	1.98
44114774--44114946	43	4.0	43	84	5	217	15	28	34	21	1.94
44114774--44114955	85	2.1	86	84	4	233	16	28	32	21	1.95
44121979--44122059	24	3.4	24	80	0	81	13	34	30	20	1.92
44122062--44123036	43	22.9	43	72	9	543	19	29	31	19	1.96
44122062--44122278	85	2.5	85	81	2	247	19	30	31	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44122135--44123099	128	7.6	127	74	7	602	19	29	31	19	1.96
44122166--44122990	85	9.7	85	77	3	685	19	29	32	19	1.96
44122062--44122522	213	2.2	212	83	1	566	18	30	32	18	1.95
44122250--44122989	255	2.9	254	79	5	794	19	29	31	19	1.96
44122421--44122991	212	2.7	209	74	9	496	19	29	30	20	1.97
44123016--44123097	43	1.9	43	82	9	105	17	30	31	20	1.95
44131411--44131545	43	3.1	44	87	4	177	15	32	34	17	1.92
44132015--44132108	43	2.2	43	86	0	125	21	27	31	19	1.97
44132015--44132306	42	6.9	42	77	6	248	19	25	32	22	1.97
44141431--44141463	15	2.2	15	100	0	66	30	12	27	30	1.92
44143118--44143174	24	2.4	24	78	0	60	12	38	31	17	1.87
44143303--44143334	14	2.3	14	100	0	64	31	46	15	6	1.71
44143330--44143458	65	2.0	65	98	0	249	32	17	28	21	1.96
44143977--44144010	17	2.1	16	89	10	52	11	26	44	17	1.83
44143981--44144017	17	2.2	17	95	0	65	10	29	40	18	1.85
44144262--44144670	171	2.4	170	82	2	446	19	29	31	18	1.96
44144758--44144964	84	2.4	85	81	2	220	20	29	29	20	1.98
44145458--44146756	554	2.3	553	80	5	1369	19	28	31	20	1.97
44144005--44148108	128	32.1	127	71	10	1563	19	29	31	19	1.97
44144001--44148076	213	19.1	212	74	8	1929	19	29	31	19	1.97
44144001--44148128	85	48.4	85	74	7	2059	19	29	31	19	1.97
44153269--44153403	43	3.1	42	87	4	180	15	30	34	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44154799--44155048	40	6.3	40	94	0	394	26	28	20	24	1.99
44154881--44155190	40	7.5	41	80	11	170	26	27	20	25	1.99
44154797--44155190	80	4.8	79	85	6	344	27	27	20	24	1.99
44154797--44155101	120	2.5	119	85	3	371	26	27	20	24	1.99
44155031--44155208	89	2.0	89	97	0	338	28	26	19	25	1.99
44157107--44157444	85	4.0	85	78	9	357	18	27	31	21	1.97
44157109--44157444	43	7.9	42	79	6	338	18	27	31	21	1.97
44157109--44157444	128	2.6	127	85	3	415	18	27	31	21	1.97
44165473--44165538	24	2.8	24	88	0	96	10	40	33	15	1.81
44165559--44165709	42	3.6	42	79	5	196	19	29	33	17	1.95
44165543--44165837	85	3.5	85	91	0	439	18	31	32	18	1.95
44165604--44166431	128	6.5	127	73	8	519	20	32	30	17	1.95
44165817--44166208	85	4.6	85	78	6	368	19	33	31	16	1.94
44165554--44165929	170	2.2	170	80	5	393	19	31	31	17	1.95
44165604--44166050	213	2.1	213	87	1	637	20	33	30	16	1.94
44165797--44166178	170	2.2	170	77	7	405	19	33	30	16	1.93
44165543--44166431	298	3.0	295	81	7	985	19	31	30	17	1.95
44165607--44166208	213	2.8	212	82	5	592	19	33	30	16	1.94
44166136--44166431	85	3.5	84	79	6	269	20	30	29	19	1.97
44165693--44166354	213	3.1	212	80	6	526	19	32	30	17	1.95
44165542--44166445	43	21.2	41	68	11	268	19	31	30	18	1.96
44165562--44166604	298	3.5	288	75	10	838	19	30	30	18	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44166456--44166613	43	3.7	42	81	9	187	17	29	34	18	1.94
44166456--44166612	86	1.8	85	86	6	228	17	28	35	19	1.94
44171770--44172179	43	9.6	43	66	10	207	18	28	33	18	1.95
44171799--44172205	85	4.8	84	78	3	350	17	28	34	19	1.95
44171753--44172293	170	3.2	167	78	5	514	17	28	34	19	1.95
44172159--44172274	43	2.7	43	79	11	137	16	30	35	18	1.93
44172194--44172328	43	3.1	42	77	6	110	15	28	35	20	1.93
44172159--44172316	86	1.8	86	80	2	192	16	29	34	19	1.94
44179641--44179936	85	3.5	85	75	9	262	19	27	31	21	1.97
44179641--44179936	43	6.9	41	75	6	232	19	27	31	21	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203