genome.fa.s17.2.7.7.80.10.50.1000.194.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  194  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61950262--61950307	18	2.6	18	85	0	56	26	23	17	32	1.97
61952511--61952547	18	2.1	18	89	0	56	27	10	8	54	1.63
61955045--61955097	26	2.0	26	92	0	88	22	28	9	39	1.85
61958493--61958565	24	3.0	24	75	9	60	52	2	2	42	1.30
61959095--61959141	19	2.5	19	96	0	85	53	8	10	27	1.64
61962183--61962288	37	2.9	37	90	2	162	25	22	16	35	1.94
61962251--61962519	52	5.2	52	83	6	352	27	22	13	35	1.92
61962353--61962525	46	3.7	46	80	11	215	28	22	13	35	1.93
61962262--61962525	98	2.6	98	92	3	420	28	21	14	35	1.93
61964460--61967264	497	5.6	497	99	0	5585	36	21	8	34	1.83
61967365--61967630	37	7.0	37	90	7	392	25	20	16	37	1.93
61967548--61967960	46	8.6	46	84	9	520	28	21	14	35	1.93
61967548--61967960	98	4.3	98	94	1	667	28	21	14	35	1.93
61971256--61971393	26	5.6	25	77	10	115	60	5	6	27	1.45
61971256--61971445	50	3.8	49	77	8	177	60	4	8	26	1.46
61971325--61971462	26	5.5	24	70	18	86	59	4	7	28	1.45
61971493--61971546	27	2.0	27	89	3	83	64	1	1	31	1.14
61973103--61973388	45	6.4	44	74	8	166	28	19	21	30	1.97
61973049--61973388	179	1.9	179	92	2	567	27	19	22	30	1.97
61973103--61973388	46	6.3	46	75	9	223	28	19	21	30	1.97
61975121--61975152	16	2.0	16	93	0	55	25	15	0	59	1.36
61975376--61975524	51	3.0	50	80	10	187	31	26	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61988119--61988297	90	2.0	90	96	0	331	29	21	17	31	1.96
61988346--61988886	271	2.0	271	93	1	924	43	12	14	30	1.81
61988995--61989179	24	7.4	24	67	15	90	59	7	6	27	1.48
61988955--61989150	99	2.0	99	96	0	365	57	9	6	26	1.55
61989094--61989283	50	3.8	50	75	8	145	60	4	7	27	1.44
61989094--61989278	26	7.3	26	75	14	138	59	4	7	28	1.44
61989218--61989360	28	5.3	27	73	15	100	58	2	9	29	1.42
61989236--61989360	28	4.5	28	72	18	127	59	1	9	29	1.39
61989223--61989397	82	2.1	82	95	1	323	57	2	9	30	1.43
61989236--61989382	28	5.5	25	71	20	93	59	2	9	29	1.40
61993404--61993477	34	2.2	34	100	0	148	43	13	20	22	1.87
62006167--62006237	27	2.6	27	79	0	79	47	16	12	22	1.80
62006215--62006444	27	8.5	27	74	7	198	36	19	20	23	1.95
62006219--62006444	54	4.2	54	83	6	262	37	19	19	24	1.94
62006189--62006442	81	3.1	80	79	5	253	38	18	19	23	1.93
62006591--62006656	27	2.5	26	85	9	80	19	24	22	33	1.97
62006638--62006691	26	2.1	26	85	0	72	18	20	22	38	1.93
62006652--62006703	26	2.0	26	84	0	68	15	23	26	34	1.94
62006691--62006756	32	2.1	32	88	0	96	18	24	22	34	1.96
62011250--62011283	12	2.9	11	87	12	50	23	0	0	76	0.79
62011276--62011304	9	3.2	9	100	0	58	10	10	0	79	0.94
62011250--62011304	19	2.9	19	86	7	69	18	5	0	76	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62013320--62013521	107	1.9	108	82	3	255	32	13	24	28	1.94
62014112--62014140	12	2.4	12	100	0	58	24	0	13	62	1.32
62023871--62024013	51	2.8	51	71	8	119	35	11	29	23	1.90
62030513--62030542	12	2.5	12	94	0	51	30	30	23	16	1.96
62043544--62043590	23	2.1	22	84	11	60	57	6	6	29	1.49
62045589--62045779	44	4.1	43	71	22	131	28	19	17	33	1.95
62045416--62045802	142	2.7	142	90	3	602	28	20	16	33	1.95
62057401--62057494	23	4.1	22	77	11	73	61	5	4	28	1.37
62057412--62057504	47	2.0	47	95	0	168	63	4	4	27	1.32
62057435--62057504	24	3.0	24	75	12	81	65	4	4	25	1.29
62057412--62057495	23	3.6	23	79	9	107	64	3	2	29	1.23
62057412--62057496	12	7.4	11	74	10	80	64	3	2	29	1.22
62057876--62057971	49	2.0	49	97	0	183	46	14	15	22	1.82
62058960--62059012	25	2.2	25	86	10	74	26	1	9	62	1.36
62067178--62067211	11	3.1	11	91	0	59	17	32	2	47	1.63
62067174--62067227	22	2.5	22	83	16	69	22	29	1	46	1.62
62067191--62067288	51	1.9	51	87	4	144	25	24	2	47	1.62
62068347--62068511	85	1.9	85	87	2	242	33	29	15	22	1.94
62068347--62068511	43	3.9	43	86	1	208	33	29	15	22	1.94
62068347--62068531	85	2.2	85	85	1	237	35	29	14	21	1.93
62072049--62072152	39	2.6	39	83	1	136	27	28	18	25	1.98
62072049--62072165	40	2.9	39	83	2	135	28	28	17	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62074085--62074127	17	2.5	17	96	3	77	37	4	4	53	1.43
62076972--62077026	26	2.1	26	83	6	67	38	0	9	52	1.33
62077406--62077452	22	2.2	21	84	3	58	44	25	4	25	1.72
62077825--62077950	7	18.0	7	68	9	51	43	32	0	23	1.59
62077843--62077950	42	2.6	43	79	4	121	45	30	0	23	1.59
62077857--62077950	14	6.6	14	74	7	64	46	30	1	21	1.58
62078267--62078312	20	2.4	20	82	7	51	63	4	4	28	1.33
62078320--62078551	41	5.7	41	83	1	304	33	25	20	20	1.97
62078320--62078551	81	2.8	82	84	1	295	33	25	20	20	1.97
62079562--62079604	18	2.4	18	88	0	59	18	27	9	44	1.80
62079845--62079892	21	2.3	21	82	7	62	31	37	22	8	1.84
62080102--62080138	7	5.4	7	84	15	51	45	0	0	54	1.00
62080232--62080257	6	4.3	6	100	0	52	38	46	0	15	1.46
62080355--62080434	19	4.4	19	66	23	55	48	8	5	37	1.56
62080255--62080463	112	1.9	111	85	2	283	46	6	8	38	1.60
62083762--62083807	21	2.1	22	88	4	67	52	28	2	17	1.56
62097136--62097168	16	2.1	16	100	0	66	57	6	12	24	1.57
62100675--62100728	23	2.5	20	76	8	54	55	3	12	27	1.54
62107710--62107775	32	2.1	32	97	0	123	53	7	13	25	1.66
62110427--62110486	31	1.9	31	93	0	102	26	30	15	28	1.96
62120057--62120108	19	2.7	19	91	5	79	21	26	23	28	1.99
62120063--62120119	19	3.0	19	84	5	71	19	24	22	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62122518--62122560	15	2.7	15	85	7	50	25	2	23	48	1.62
62122606--62122732	39	3.3	39	85	0	182	30	3	20	45	1.67
62134426--62134625	39	5.1	39	78	7	181	19	30	15	35	1.92
62134426--62134636	40	5.3	39	79	5	183	19	29	14	36	1.92
62134427--62134643	79	2.7	78	75	6	206	19	29	15	35	1.92
62139114--62139159	20	2.2	21	84	3	58	23	19	4	52	1.64
62140220--62140289	35	2.0	36	86	10	101	40	20	8	31	1.82
62140798--62140839	20	2.2	19	83	12	50	14	19	7	59	1.57
62141277--62141336	16	3.8	16	88	4	77	43	5	21	30	1.74
62141328--62141417	45	2.0	43	87	8	128	32	4	26	36	1.77
62141529--62141645	55	2.1	55	82	4	137	52	4	0	42	1.20
62141742--62141780	5	7.6	5	94	5	69	82	0	17	0	0.68
62143179--62143218	15	2.7	15	92	3	64	67	17	15	0	1.23
62148922--62148953	11	2.9	11	95	0	55	75	3	21	0	0.95
62148927--62148959	16	2.0	17	88	5	50	69	0	30	0	0.88
62161198--62161697	124	4.0	124	93	0	793	29	15	22	32	1.95
62164920--62164946	13	2.1	13	100	0	54	55	0	0	44	0.99
62165142--62165207	11	5.9	11	80	16	66	42	1	30	25	1.64
62165142--62165206	22	2.9	23	82	15	75	41	1	30	26	1.65
62165156--62165206	11	4.6	11	87	4	68	41	1	33	23	1.66
62169315--62169347	15	2.1	16	88	11	50	33	6	3	57	1.38
62170886--62170966	37	2.2	36	83	12	96	34	18	16	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62178352--62178416	24	2.7	24	82	2	67	36	21	24	16	1.94
62179787--62179830	12	3.8	12	88	11	74	54	0	0	45	0.99
62179786--62179830	22	2.0	22	100	0	90	53	0	0	46	1.00
62179786--62179821	10	3.4	10	85	14	54	55	0	0	44	0.99
62187104--62187138	18	1.9	18	88	11	54	22	5	5	65	1.36
62189608--62189640	16	2.1	16	100	0	66	30	12	51	6	1.63
62189636--62189664	6	4.8	6	100	0	58	34	0	51	13	1.42
62200853--62200892	21	1.9	21	85	10	55	65	0	5	30	1.14
62200853--62200892	20	1.9	19	85	14	53	65	0	5	30	1.14
62200855--62200949	30	3.0	30	86	10	120	61	0	3	35	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203