genome.fa.s17.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  146  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46442101--46442141	19	2.2	19	95	0	73	39	9	19	31	1.84
46446233--46446410	27	6.6	27	84	3	205	29	28	15	26	1.96
46446254--46446409	82	1.9	81	88	3	233	29	28	15	26	1.96
46456929--46456953	9	2.8	9	100	0	50	8	0	32	60	1.26
46457179--46457380	104	2.0	103	80	6	230	29	6	29	34	1.82
46463480--46463504	12	2.1	12	100	0	50	16	0	24	60	1.36
46469824--46470074	44	5.7	42	79	7	268	29	28	17	25	1.97
46469831--46470074	88	2.8	88	94	1	418	28	27	18	25	1.98
46469824--46470073	132	1.9	132	84	4	335	29	28	17	25	1.97
46470074--46470485	88	4.7	87	87	2	518	21	23	26	28	1.99
46470074--46470485	176	2.3	176	87	1	574	21	23	26	28	1.99
46470203--46470427	44	5.1	44	64	4	139	22	25	26	25	2.00
46471691--46471728	6	6.8	6	88	11	55	0	13	0	86	0.56
46471691--46471736	22	2.1	21	84	4	56	4	15	0	80	0.86
46478277--46478313	18	2.0	19	89	5	58	43	0	13	43	1.44
46480944--46481087	13	10.8	13	77	13	141	45	2	17	34	1.60
46480944--46481058	27	4.3	27	79	12	130	46	1	16	34	1.57
46480944--46481088	40	3.6	40	96	0	263	45	2	17	34	1.61
46480952--46481085	27	5.1	25	79	12	126	45	2	17	34	1.61
46482634--46482679	22	2.1	22	88	4	67	43	34	2	19	1.63
46486081--46486121	19	2.3	18	87	8	57	39	0	0	60	0.96
46486381--46486428	8	6.3	7	83	11	51	33	2	0	64	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46486579--46486633	28	2.0	27	83	13	69	29	9	0	61	1.26
46491548--46491589	15	2.8	15	89	7	59	33	0	2	64	1.07
46491550--46491590	20	2.0	21	86	9	59	36	0	2	60	1.10
46500405--46500477	26	2.8	25	88	12	103	30	15	10	43	1.80
46511990--46512071	25	3.3	25	73	19	80	23	24	19	32	1.97
46511992--46512104	50	2.3	49	78	7	129	24	22	22	30	1.99
46513121--46513168	24	2.1	22	84	7	60	20	8	16	54	1.68
46513119--46513175	23	2.5	22	81	10	62	22	10	17	49	1.77
46515792--46515834	21	2.1	20	86	4	59	48	4	23	23	1.69
46517300--46517366	25	2.7	25	80	13	75	25	25	22	26	2.00
46518593--46518622	12	2.5	12	94	0	51	23	40	30	6	1.80
46519503--46519565	25	2.5	26	82	12	85	33	14	11	41	1.81
46522397--46522450	26	2.1	26	96	0	99	33	7	14	44	1.73
46524065--46524124	15	3.9	15	72	14	50	23	8	11	56	1.61
46536718--46536967	106	2.4	106	89	0	392	31	15	18	34	1.92
46536876--46537053	69	2.6	69	85	0	248	34	17	15	32	1.92
46540926--46541056	54	2.4	54	100	0	262	28	19	19	32	1.96
46548750--46548870	57	2.1	57	89	7	183	47	5	22	23	1.72
46548855--46548880	13	2.0	13	100	0	52	69	0	15	15	1.20
46550707--46550811	41	2.6	41	81	3	122	20	20	27	30	1.98
46550706--46550835	41	3.2	40	70	8	93	22	20	25	32	1.98
46551483--46551668	94	2.0	94	100	0	372	37	4	21	36	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46552786--46552859	34	2.2	34	92	0	121	39	32	8	20	1.82
46552794--46552873	34	2.4	34	82	4	99	37	31	12	18	1.88
46560797--46560924	43	3.0	43	83	8	163	28	28	19	24	1.99
46562066--46562094	14	2.0	15	93	6	51	51	20	0	27	1.47
46563308--46563352	23	1.9	23	86	13	65	37	0	6	55	1.26
46564119--46564174	9	5.8	9	78	14	58	32	0	3	64	1.11
46567335--46567422	27	3.3	27	85	0	122	17	28	25	29	1.97
46570677--46570841	77	2.2	77	91	1	260	54	9	7	28	1.60
46571029--46571108	33	2.4	33	82	0	88	27	13	46	12	1.80
46572902--46573191	158	1.8	157	94	1	510	54	11	3	30	1.53
46573302--46573337	16	2.2	17	95	5	65	66	5	0	27	1.13
46573324--46573366	23	2.0	21	81	9	50	65	16	0	18	1.28
46574102--46574254	71	2.2	71	100	0	306	11	14	21	52	1.72
46576448--46576655	92	2.3	91	94	2	355	47	3	3	46	1.36
46576682--46576870	59	3.2	58	68	19	163	42	3	4	49	1.38
46576671--46576966	120	2.5	120	96	1	531	43	2	5	48	1.37
46576744--46576931	61	3.1	61	67	14	181	43	2	6	47	1.42
46576792--46576826	18	2.0	17	88	5	52	45	0	0	54	0.99
46576745--46576928	54	3.1	59	66	20	164	42	2	7	47	1.42
46576916--46576957	15	2.9	15	82	10	52	47	0	0	52	1.00
46577180--46577212	16	2.1	16	100	0	66	21	36	6	36	1.78
46577252--46577411	80	2.1	78	84	7	209	55	16	0	28	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46577574--46577619	18	2.6	18	89	0	65	2	41	0	56	1.11
46577572--46577607	6	6.0	6	100	0	72	0	50	0	50	1.00
46578239--46578421	60	3.1	58	79	7	163	42	17	15	24	1.88
46582413--46582515	44	2.3	44	83	6	120	27	23	24	25	2.00
46586091--46586130	21	1.9	21	84	0	53	37	0	0	62	0.95
46591505--46591580	28	2.7	28	91	0	125	43	7	3	44	1.51
46591950--46592433	98	5.0	91	77	13	402	28	0	14	55	1.45
46592051--46592441	98	4.0	97	80	9	411	28	0	14	56	1.42
46592404--46592439	17	2.3	15	90	9	54	30	0	5	63	1.17
46599189--46599241	25	2.2	24	83	10	63	33	11	7	47	1.68
46605008--46605064	17	3.0	20	80	17	59	70	0	8	21	1.14
46605075--46605149	31	2.4	31	86	6	98	64	6	0	29	1.19
46605213--46605267	21	2.8	20	78	8	60	67	7	1	23	1.26
46605220--46605316	10	9.9	10	68	12	58	60	4	2	32	1.27
46605245--46605286	19	2.1	21	86	8	61	69	0	0	30	0.89
46605875--46605929	23	2.5	21	82	11	65	34	0	5	60	1.20
46605875--46605945	23	3.0	22	73	13	61	35	0	5	59	1.21
46605953--46606006	19	2.8	20	81	18	62	38	0	1	59	1.08
46606004--46606054	20	2.5	21	77	6	59	29	0	7	62	1.23
46606034--46606132	26	3.5	28	72	8	76	35	0	3	61	1.11
46605953--46606132	9	18.7	9	68	16	62	35	0	3	61	1.15
46606251--46606275	12	2.1	12	100	0	50	24	8	0	68	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46608677--46608731	29	1.9	28	85	3	74	38	0	16	45	1.47
46616161--46616200	14	2.9	14	84	0	53	42	17	7	32	1.77
46616126--46616192	34	1.9	35	87	3	100	44	13	10	31	1.77
46617419--46617646	116	2.0	116	97	0	429	32	13	21	33	1.91
46619730--46619802	34	2.1	34	97	0	137	26	2	21	49	1.63
46619980--46620213	120	2.0	119	97	0	441	42	0	4	52	1.27
46620155--46620201	18	2.6	18	90	6	69	42	0	0	57	0.98
46620431--46620470	16	2.5	16	88	8	55	25	30	5	40	1.77
46626220--46626267	11	4.1	11	79	12	51	66	2	4	27	1.21
46628554--46628624	34	2.1	34	97	0	133	23	0	18	57	1.40
46644482--46644524	22	2.0	22	95	0	77	27	20	25	25	1.99
46644456--46644559	23	4.4	23	80	8	95	29	23	25	21	1.99
46649463--46649665	46	4.3	48	88	7	265	35	14	21	28	1.92
46649397--46649665	98	2.7	98	93	0	457	34	14	22	28	1.93
46649629--46649774	37	4.0	37	93	1	242	36	16	21	24	1.94
46651612--46651636	13	1.9	13	100	0	50	40	48	0	12	1.40
46651739--46651805	9	7.4	9	79	0	80	26	10	20	41	1.85
46653381--46653417	9	4.1	9	92	0	65	45	13	10	29	1.77
46654194--46654219	5	5.2	5	100	0	52	19	19	19	42	1.90
46654903--46655409	251	2.0	251	99	0	1005	31	20	17	29	1.96
46656399--46656424	5	5.2	5	100	0	52	19	19	19	42	1.90
46657108--46657614	251	2.0	251	99	0	1005	31	20	17	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46658762--46658787	5	5.2	5	100	0	52	38	19	19	23	1.93
46658736--46658787	26	2.0	26	81	7	61	34	15	26	23	1.94
46659157--46659185	9	3.2	9	100	0	58	68	0	0	31	0.89
46659722--46659758	9	4.1	9	92	0	65	29	10	13	45	1.77
46661290--46661406	43	2.7	43	98	0	225	29	18	17	34	1.95
46667892--46667924	2	16.5	2	100	0	66	51	0	48	0	1.00
46671094--46671145	20	2.6	20	81	6	61	57	5	0	36	1.23
46698467--46698815	185	1.9	184	90	1	565	38	19	16	26	1.92
46702452--46702498	19	2.4	20	89	3	69	57	23	6	12	1.58
46707529--46707556	14	2.0	14	100	0	56	28	35	7	28	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203