genome.fa.s17.2.7.7.80.10.50.1000.178.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  178  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56678373--56678559	51	3.7	51	72	9	159	26	16	25	31	1.96
56678570--56678657	45	2.0	45	93	0	149	26	18	22	32	1.97
56678807--56678993	51	3.7	51	72	9	159	26	16	25	31	1.96
56679004--56679091	45	2.0	45	93	0	149	26	18	22	32	1.97
56678333--56679201	434	2.0	434	100	0	1738	29	13	24	31	1.94
56686448--56686543	50	1.9	50	93	0	165	25	4	22	47	1.69
56687262--56687344	41	2.0	41	100	0	166	24	26	19	30	1.98
56688923--56688991	34	2.0	34	97	0	129	34	24	17	23	1.96
56698747--56698959	105	2.0	105	95	0	381	39	21	16	22	1.92
56700359--56700384	12	2.2	12	100	0	52	46	15	30	7	1.74
56714484--56714573	46	2.0	46	90	0	144	23	5	12	58	1.54
56715939--56716028	46	2.0	46	84	0	117	25	6	8	58	1.52
56722631--56722724	25	3.8	25	77	13	90	21	26	21	30	1.98
56722695--56722760	25	2.8	24	79	4	71	19	28	19	31	1.97
56722826--56722940	50	2.2	52	80	7	128	24	24	20	31	1.98
56722857--56722940	25	3.2	25	75	11	80	22	22	20	34	1.97
56723956--56724030	31	2.5	29	87	10	98	36	2	0	61	1.10
56723966--56724063	39	2.4	40	91	5	153	38	2	0	59	1.09
56724045--56724101	23	2.4	23	88	2	78	40	0	3	56	1.17
56731297--56731394	25	3.8	25	80	1	115	18	26	23	31	1.97
56733748--56733790	18	2.4	18	80	3	52	32	0	13	53	1.41
56740091--56740140	24	2.1	24	100	0	100	26	28	12	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56744124--56744162	14	2.7	15	84	4	53	35	5	2	56	1.35
56746021--56746052	13	2.5	13	94	0	55	31	0	12	56	1.37
56746147--56746389	50	4.8	50	89	0	360	26	23	30	20	1.98
56747850--56747904	27	2.0	28	82	3	67	36	1	0	61	1.06
56748087--56748142	24	2.4	23	79	5	58	51	10	5	32	1.59
56748093--56748142	24	2.1	24	84	0	64	52	12	4	32	1.57
56748534--56748573	21	1.9	21	84	0	53	0	27	7	65	1.20
56749494--56749551	22	2.6	22	75	2	62	6	27	1	63	1.29
56763361--56763541	44	4.1	44	66	13	129	29	18	27	24	1.98
56763260--56763648	132	2.9	132	94	0	688	28	21	25	24	1.99
56763640--56763802	44	3.8	42	75	14	118	26	20	24	28	1.99
56763753--56763867	57	2.0	57	96	0	212	30	17	27	24	1.97
56763810--56763986	89	2.0	89	100	0	354	28	18	27	25	1.98
56763810--56764379	44	13.1	43	73	13	348	29	19	23	27	1.98
56763810--56764024	89	2.4	89	92	4	328	28	19	25	26	1.99
56763870--56764114	133	1.9	127	81	10	298	28	20	24	26	1.99
56763867--56764383	217	2.4	217	93	0	863	29	20	23	27	1.99
56764553--56764684	19	6.8	19	91	3	219	37	10	15	36	1.82
56764553--56764691	59	2.4	57	89	6	219	38	10	15	36	1.81
56765441--56765490	25	2.0	26	88	4	75	32	8	4	56	1.47
56766164--56766358	98	2.0	98	94	0	345	27	10	25	36	1.88
56782215--56782271	23	2.5	23	97	0	105	10	17	3	68	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56783069--56783167	27	3.7	27	76	2	92	36	11	21	31	1.88
56783329--56783416	27	3.2	27	81	1	95	36	11	26	26	1.90
56785957--56786009	27	2.0	27	88	0	79	16	33	22	26	1.96
56785960--56786017	27	2.1	27	83	0	71	17	34	20	27	1.95
56786180--56786296	55	2.1	54	81	4	137	49	16	12	21	1.78
56786327--56786488	54	2.8	59	78	12	192	48	17	14	19	1.82
56786236--56786488	113	2.2	114	83	2	305	48	17	13	20	1.80
56786175--56786464	54	5.3	54	74	9	219	49	16	13	20	1.79
56794501--56794685	43	4.3	43	92	0	307	34	25	15	24	1.94
56794474--56794685	86	2.5	86	88	1	273	33	24	15	25	1.95
56795119--56795159	21	2.0	21	90	0	64	24	19	9	46	1.80
56796520--56796604	40	2.1	40	86	4	118	50	12	5	30	1.64
56796534--56796620	40	2.2	40	81	6	95	48	11	6	33	1.66
56799264--56799986	146	5.0	147	89	6	1142	24	16	14	44	1.84
56799182--56799986	279	2.9	278	92	4	1260	25	15	13	45	1.83
56800636--56800669	14	2.4	14	90	9	52	32	44	0	23	1.54
56800622--56800693	21	3.4	21	73	9	65	36	38	0	25	1.56
56800974--56801004	15	2.1	15	93	0	53	35	45	0	19	1.51
56801267--56801693	114	3.8	112	88	4	549	26	25	22	25	2.00
56801267--56801693	227	1.9	227	86	4	612	26	25	22	25	2.00
56801762--56801787	12	2.2	12	100	0	52	46	30	15	7	1.74
56803997--56804033	13	2.7	14	83	8	58	70	2	0	27	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56811340--56811384	18	2.3	21	85	14	62	26	2	0	71	0.98
56813370--56813469	49	2.0	49	92	0	164	30	9	11	50	1.68
56814863--56815222	120	3.0	120	97	0	666	42	1	4	51	1.29
56815169--56815204	18	2.1	17	90	10	56	38	0	0	61	0.96
56815929--56816022	28	3.5	28	69	26	78	36	1	2	60	1.16
56815945--56816025	15	6.1	14	68	20	57	32	1	2	64	1.15
56815944--56816039	24	3.9	24	80	8	111	32	1	4	62	1.21
56818446--56818476	4	7.8	4	100	0	62	25	48	0	25	1.52
56822154--56822195	20	2.1	20	86	0	57	47	0	7	45	1.30
56823107--56823161	21	2.5	22	81	16	62	43	1	3	50	1.30
56823030--56823259	113	2.0	113	100	0	460	40	11	5	43	1.63
56824122--56824203	38	2.1	38	82	6	94	53	2	2	41	1.27
56833912--56833969	21	2.7	21	81	5	71	25	32	25	15	1.95
56834687--56834738	8	6.9	8	80	12	65	69	9	0	21	1.17
56834685--56834750	29	2.3	29	89	5	98	69	9	0	21	1.15
56834695--56834736	21	2.0	21	90	0	66	71	9	0	19	1.13
56836258--56836311	22	2.5	22	71	0	54	61	11	9	18	1.55
56836297--56836330	11	3.1	11	86	0	50	70	23	0	5	1.09
56837199--56837368	43	4.0	43	79	9	184	25	31	18	24	1.98
56837199--56837365	86	1.9	86	84	2	219	24	32	18	24	1.97
56837310--56837444	43	3.1	43	75	7	121	32	22	15	28	1.95
56837502--56837558	23	2.5	24	80	8	64	56	1	1	40	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56846694--56846836	59	2.4	58	82	4	180	23	16	21	37	1.93
56847905--56847938	18	1.9	17	88	5	50	50	0	11	38	1.39
56848004--56848231	121	1.9	121	95	1	413	42	1	5	51	1.33
56848163--56848209	18	2.6	18	90	6	69	42	0	0	57	0.98
56848378--56848463	46	1.9	44	85	4	118	40	26	6	25	1.81
56848443--56848496	16	3.4	15	89	5	72	22	29	7	40	1.81
56848443--56848508	32	2.1	31	91	8	107	21	31	6	40	1.77
56848451--56848508	16	3.7	16	93	2	100	18	34	5	41	1.73
56851474--56851573	50	2.0	50	100	0	200	32	16	6	46	1.71
56853738--56853784	14	3.4	14	85	2	60	38	44	0	17	1.48
56853738--56853784	7	6.9	7	83	11	53	38	44	0	17	1.48
56853669--56853831	81	2.0	84	89	3	251	44	28	0	26	1.55
56853874--56853932	14	4.2	14	82	0	64	40	40	1	16	1.59
56854086--56854132	14	3.4	14	85	2	60	38	44	0	17	1.48
56854086--56854132	7	6.9	7	83	11	53	38	44	0	17	1.48
56853587--56854282	348	2.0	348	100	0	1392	41	31	1	26	1.64
56854017--56854179	81	2.0	84	89	3	251	44	28	0	26	1.55
56854222--56854287	14	4.7	14	84	0	69	39	40	1	18	1.60
56854226--56854297	14	5.1	14	83	8	65	37	40	1	20	1.62
56854944--56854969	12	2.2	12	100	0	52	53	15	7	23	1.67
56857714--56857748	13	2.7	13	86	0	52	42	22	8	25	1.82
56864957--56865196	28	8.5	28	91	3	349	26	11	27	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56864985--56865195	57	3.7	57	95	1	363	27	11	26	34	1.91
56870842--56870871	15	2.0	15	93	0	51	20	6	10	63	1.47
56871747--56871838	19	4.8	19	66	9	62	41	19	7	31	1.80
56871718--56871868	58	2.6	59	90	6	236	38	18	9	33	1.84
56872790--56872853	16	4.1	16	69	16	53	48	12	1	37	1.51
56873758--56873810	5	10.6	5	100	0	106	58	0	0	41	0.98
56903159--56903211	11	4.7	11	86	13	65	22	30	0	47	1.52
56904584--56904648	21	3.0	22	84	13	82	53	6	3	36	1.41
56904563--56904673	25	4.6	23	75	19	84	54	7	1	36	1.38
56905040--56905106	30	2.2	30	97	0	125	16	37	37	8	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203