genome.fa.s17.2.7.7.80.10.50.1000.199.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  199  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63591983--63592059	38	1.9	40	87	10	113	38	16	7	36	1.78
63592609--63593161	45	12.7	45	71	11	282	26	23	20	29	1.99
63592606--63593248	44	14.8	44	67	11	184	26	22	20	30	1.98
63592922--63593202	84	3.3	84	70	12	264	27	22	20	29	1.98
63592833--63593248	173	2.4	173	82	2	496	27	22	20	30	1.98
63592606--63593119	217	2.4	218	82	3	660	25	22	20	30	1.98
63593398--63593537	43	3.2	42	67	9	120	17	24	29	28	1.97
63593336--63593638	88	3.5	88	91	0	482	18	22	29	29	1.97
63595266--63595298	14	2.3	15	89	5	50	30	33	12	24	1.91
63600811--63600883	19	3.8	19	92	0	128	35	16	10	36	1.84
63600788--63600883	38	2.4	40	87	6	133	38	15	9	36	1.80
63600788--63600883	19	4.8	19	87	5	111	38	15	9	36	1.80
63601274--63601342	26	2.7	26	88	0	93	14	18	23	43	1.87
63601456--63601510	28	2.0	28	92	0	92	23	23	23	29	1.99
63605869--63605936	9	7.3	9	77	9	57	39	4	13	42	1.64
63605880--63605939	27	2.2	28	87	3	86	36	3	16	43	1.65
63605880--63605939	9	6.6	9	76	3	66	36	3	16	43	1.65
63606904--63606989	42	2.1	41	89	4	129	19	19	12	47	1.81
63607798--63607855	14	4.2	14	80	12	50	53	25	1	18	1.54
63607811--63607849	21	1.9	20	85	15	53	48	28	2	20	1.62
63608126--63608205	39	2.0	40	87	2	117	22	25	23	28	1.99
63608264--63608385	40	3.1	39	81	6	124	26	22	21	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63608687--63608724	20	1.9	20	88	0	58	28	0	7	63	1.23
63609399--63609467	28	2.4	27	85	7	93	55	13	8	23	1.65
63614402--63614434	10	3.4	10	83	8	50	78	0	12	9	0.95
63616172--63616227	20	3.1	18	76	20	62	66	1	1	30	1.12
63616265--63616324	20	3.0	20	76	11	70	61	8	6	23	1.48
63616526--63616589	32	2.1	31	85	5	85	31	4	0	64	1.14
63616514--63616598	10	8.7	10	70	14	52	31	3	1	63	1.19
63616954--63616996	21	2.1	20	83	12	52	46	0	6	46	1.30
63617261--63617304	16	2.9	16	76	10	56	36	0	0	63	0.95
63617255--63617299	24	2.0	22	86	8	63	40	0	0	60	0.97
63621967--63622029	31	2.0	31	96	0	117	23	7	9	58	1.56
63623652--63623698	23	2.0	23	91	8	76	51	4	4	40	1.41
63627666--63627699	17	2.0	17	88	0	50	20	29	2	47	1.65
63629280--63629502	43	5.3	43	83	3	251	26	17	26	28	1.98
63629280--63629477	85	2.3	85	90	4	301	26	17	26	29	1.98
63635381--63635729	59	5.9	59	89	3	511	46	3	5	43	1.44
63635844--63635907	20	3.2	20	80	6	67	70	3	0	26	1.02
63637251--63637333	25	3.3	25	88	3	123	25	22	40	10	1.86
63637339--63637458	62	1.9	62	86	3	170	39	3	37	20	1.69
63637402--63637603	75	2.6	74	75	9	183	38	2	35	23	1.70
63644086--63644114	12	2.3	13	94	5	51	65	6	6	20	1.40
63653563--63653598	18	2.1	16	90	10	54	61	0	5	33	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63658254--63658289	18	2.1	16	90	10	54	61	0	5	33	1.19
63665311--63665417	44	2.6	41	84	10	130	32	7	25	34	1.84
63665744--63665867	48	2.6	48	92	0	203	27	10	16	45	1.80
63666073--63666125	26	2.0	26	96	0	97	16	3	22	56	1.56
63677296--63677350	5	11.0	5	100	0	110	40	0	0	60	0.97
63681926--63681968	22	2.0	22	86	9	61	46	11	9	32	1.72
63682200--63682229	12	2.5	12	100	0	60	16	6	0	76	0.99
63684065--63684263	68	3.0	67	73	19	209	39	3	5	52	1.39
63684135--63684251	62	1.9	59	84	8	155	39	3	5	52	1.41
63686348--63686389	13	3.2	13	80	16	50	21	0	4	73	1.01
63687961--63688014	7	7.4	7	87	8	81	16	0	38	44	1.48
63687961--63688014	15	3.7	15	87	2	83	16	0	38	44	1.48
63687961--63688014	22	2.5	22	93	0	99	16	0	38	44	1.48
63688362--63688681	160	2.0	160	93	0	541	32	13	10	43	1.77
63690475--63690803	22	15.0	22	82	1	408	42	18	9	29	1.82
63690475--63690803	44	7.5	44	91	1	516	42	18	9	29	1.82
63696784--63696849	13	5.1	13	72	7	53	36	18	9	36	1.82
63696784--63696849	26	2.5	26	80	0	78	36	18	9	36	1.82
63698310--63698371	31	2.1	30	82	11	74	29	4	17	48	1.68
63706367--63706544	27	6.6	27	83	3	205	26	15	28	29	1.96
63706368--63706523	82	1.9	81	88	3	233	26	15	28	29	1.96
63706364--63706544	82	2.2	81	83	2	229	27	15	27	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63707917--63707946	15	1.9	16	93	6	53	60	0	13	26	1.34
63708923--63708965	20	2.2	19	83	4	50	23	30	0	46	1.52
63713724--63713752	3	9.7	3	100	0	58	31	34	0	34	1.58
63714899--63714938	15	2.8	14	81	7	53	72	0	2	25	0.97
63716453--63716509	20	3.1	18	80	12	62	52	1	0	45	1.11
63717944--63718104	56	2.9	54	88	3	232	32	15	26	24	1.95
63722425--63722464	21	1.9	21	94	0	71	27	50	7	15	1.70
63726745--63726926	50	3.7	49	80	10	169	26	19	32	21	1.97
63742697--63742918	64	3.4	63	79	13	241	62	1	6	30	1.28
63742895--63742924	4	7.5	4	92	0	51	73	0	3	23	0.98
63742759--63742936	77	2.4	71	85	6	230	63	1	6	28	1.28
63751044--63751069	13	2.0	13	100	0	52	46	0	30	23	1.53
63753525--63753613	33	2.8	32	81	13	110	47	19	7	25	1.76
63753835--63753866	16	2.1	15	94	5	55	53	9	0	37	1.34
63754071--63754132	31	1.9	33	90	6	101	56	0	0	43	0.99
63763859--63763890	12	2.6	13	85	14	50	56	6	0	37	1.25
63765712--63765741	3	10.3	3	92	7	53	36	30	0	33	1.58
63769818--63769856	19	2.0	20	90	5	62	43	0	17	38	1.50
63769902--63770061	47	3.4	47	81	7	184	30	13	20	35	1.91
63776110--63776280	43	4.0	42	82	7	193	22	16	28	33	1.95
63776125--63776280	84	1.9	84	86	5	226	23	16	28	31	1.96
63776441--63776472	16	1.9	17	93	6	57	40	0	21	37	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63783505--63783627	63	2.0	62	83	4	158	22	21	29	26	1.99
63783519--63783663	62	2.3	63	77	10	145	24	21	27	26	1.99
63784244--63784299	22	2.5	23	80	8	62	21	10	12	55	1.67
63787380--63787437	22	2.6	22	83	0	62	24	18	8	48	1.76
63790519--63790549	16	1.9	16	93	0	53	38	25	0	35	1.56
63800945--63801075	39	3.4	39	80	0	145	15	23	38	22	1.92
63811837--63811862	8	3.2	8	100	0	52	42	23	0	34	1.54
63814392--63814417	6	4.3	6	100	0	52	19	0	0	80	0.71
63817075--63817139	16	4.0	15	74	21	51	27	23	1	47	1.60
63817067--63817129	28	2.2	29	81	13	78	25	22	3	49	1.65
63817077--63817134	17	3.5	17	76	19	52	27	22	1	48	1.60
63817077--63817139	33	1.9	33	83	6	83	28	22	1	47	1.60
63827055--63827095	17	2.4	17	87	0	64	21	26	19	31	1.97
63830166--63830387	88	2.5	88	81	4	250	28	26	24	21	1.99
63830906--63831240	44	7.7	43	70	13	197	30	19	21	28	1.97
63831122--63831370	128	1.9	128	80	3	286	30	22	20	25	1.98
63830897--63831317	217	1.9	217	86	2	605	29	21	21	27	1.98
63837302--63837371	35	2.0	35	100	0	140	37	11	14	37	1.82
63837933--63837998	21	3.1	21	78	4	78	24	22	18	34	1.96
63837938--63838012	21	3.5	21	74	5	62	22	16	21	40	1.91
63839225--63839292	33	2.1	33	83	10	86	13	7	4	75	1.17
63856087--63856195	50	2.1	52	83	9	136	35	22	17	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63860811--63860845	14	2.5	14	90	0	52	40	5	0	54	1.24
63860819--63860846	14	2.0	14	100	0	56	35	7	0	57	1.26
63861294--63861331	19	2.0	19	85	10	51	21	42	0	36	1.53
63866920--63866954	15	2.3	15	90	0	52	42	0	5	51	1.25
63883717--63883758	21	2.0	21	86	9	59	52	0	2	45	1.13
63884908--63885200	156	1.9	156	93	1	507	35	18	17	28	1.94
63889140--63889202	11	5.9	11	74	17	53	33	3	3	60	1.28
63894946--63895004	26	2.4	25	86	8	84	28	0	8	62	1.24
63905945--63906590	322	2.0	322	100	0	1292	30	20	14	33	1.93
63913698--63913892	93	2.1	92	88	4	286	44	4	4	47	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203