genome.fa.s17.2.7.7.80.10.50.1000.170.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  170  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53900854--53900947	30	3.0	30	80	8	100	68	1	18	12	1.27
53900854--53900919	12	5.8	12	71	16	50	68	1	18	12	1.28
53900903--53900937	18	1.9	18	88	11	54	57	0	20	22	1.41
53900925--53900963	18	2.3	17	91	8	62	71	0	15	12	1.14
53901967--53902147	92	2.0	92	100	0	362	32	11	20	36	1.88
53903006--53903053	16	3.2	15	85	11	64	14	12	22	50	1.77
53903009--53903053	13	3.2	13	82	17	63	15	11	22	51	1.75
53905286--53905315	9	3.3	9	95	0	51	53	23	10	13	1.69
53909409--53909451	21	2.0	22	90	4	70	18	32	23	25	1.97
53909967--53910021	15	3.5	17	85	11	73	30	10	7	50	1.64
53912741--53912786	23	2.0	23	91	0	74	34	8	17	39	1.80
53913679--53913709	16	1.9	16	93	0	53	25	16	25	32	1.96
53913874--53914013	27	5.2	26	82	6	124	25	16	17	41	1.89
53913999--53914028	15	2.0	15	100	0	60	20	6	13	60	1.55
53915609--53915697	23	3.9	23	93	0	151	32	25	4	37	1.76
53922874--53922998	47	2.7	47	82	2	135	30	10	32	26	1.90
53923121--53923199	37	2.1	37	88	0	113	22	18	32	25	1.97
53924882--53924919	20	1.9	20	94	0	67	23	10	28	36	1.88
53930898--53930929	15	2.0	17	88	11	50	62	15	0	21	1.32
53934718--53934771	28	1.9	28	88	0	81	31	25	25	16	1.97
53934715--53934778	28	2.3	27	78	7	74	31	23	25	20	1.98
53934887--53934939	26	2.0	26	85	0	70	32	18	28	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53934989--53935186	32	6.2	32	77	6	134	36	21	19	22	1.95
53935009--53935186	32	5.6	32	78	6	157	35	22	19	22	1.96
53935406--53935453	20	2.4	20	89	0	69	25	31	16	27	1.97
53937109--53937304	27	7.3	27	88	0	302	22	21	20	34	1.97
53937106--53937412	54	5.9	54	79	9	341	23	22	20	33	1.97
53937105--53937396	81	3.8	81	77	11	304	23	21	21	33	1.97
53937267--53937346	42	1.9	42	92	0	133	25	22	27	25	2.00
53937310--53937385	27	2.8	27	81	0	89	21	25	19	34	1.96
53937213--53937396	96	1.9	96	89	0	287	22	22	22	31	1.98
53937376--53937513	27	5.1	27	85	3	172	23	17	15	42	1.88
53940665--53940692	3	9.3	3	100	0	56	35	0	0	64	0.94
53947358--53947385	14	2.0	14	100	0	56	42	0	14	42	1.45
53963059--53963110	25	2.1	25	96	0	95	32	15	21	30	1.94
53965856--53965900	23	2.0	23	95	0	81	37	28	4	28	1.77
53971519--53971822	40	7.6	40	94	1	459	24	20	28	26	1.99
53971480--53971822	80	4.3	80	90	1	458	23	20	28	27	1.99
53971480--53971822	120	2.9	119	88	3	476	23	20	28	27	1.99
53979556--53979765	40	5.3	39	87	5	233	24	21	28	25	1.99
53979503--53979765	120	2.2	120	81	4	300	25	21	27	25	1.99
53979556--53979800	80	3.1	80	81	3	228	25	21	28	24	1.99
53982087--53982131	23	2.0	23	95	0	81	37	28	4	28	1.77
53999890--53999923	8	4.4	8	96	3	61	73	0	0	26	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54000828--54000881	24	2.2	24	86	0	72	20	11	16	51	1.74
54001022--54001216	32	6.1	31	80	9	214	21	19	20	39	1.93
54001022--54001216	64	3.1	63	83	6	236	21	19	20	39	1.93
54001208--54001272	22	3.0	21	75	4	67	18	20	16	44	1.87
54012804--54012868	28	2.3	28	84	5	87	13	18	1	66	1.33
54015393--54015430	10	3.8	10	83	13	51	26	15	28	28	1.96
54015395--54015443	20	2.5	20	93	0	80	24	18	32	24	1.97
54015922--54016003	39	2.1	39	100	0	164	45	4	28	21	1.73
54021416--54021484	35	1.9	36	88	2	104	26	10	28	34	1.89
54022590--54022738	40	3.7	40	85	0	190	22	29	16	30	1.96
54022587--54022737	80	1.9	80	87	0	221	22	29	17	30	1.96
54029516--54029593	37	2.1	37	88	4	113	25	30	17	25	1.97
54029712--54030248	47	11.6	47	83	10	635	28	30	8	31	1.88
54029948--54030081	72	1.9	72	96	0	250	29	28	7	34	1.85
54029995--54030045	25	2.0	25	100	0	102	31	23	3	41	1.73
54029997--54030053	25	2.3	25	93	0	96	31	28	3	36	1.74
54029854--54030200	174	2.0	166	90	4	541	29	29	8	32	1.86
54029903--54030155	127	2.1	123	86	8	347	30	29	7	32	1.85
54029809--54030257	221	2.0	220	88	5	671	30	29	8	32	1.87
54040525--54040649	28	4.5	28	95	1	207	26	13	28	32	1.94
54048588--54048635	18	2.6	18	83	6	60	50	2	4	43	1.33
54048650--54048697	22	2.3	21	85	7	62	27	4	8	60	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54049249--54049278	14	2.1	14	93	0	51	16	43	0	40	1.48
54063331--54063363	14	2.4	14	94	0	57	27	15	24	33	1.95
54063972--54064025	22	2.5	22	78	6	56	18	7	29	44	1.77
54065120--54065147	14	2.0	14	100	0	56	35	7	21	35	1.81
54066269--54066298	12	2.5	12	94	0	51	6	23	40	30	1.80
54068064--54069352	428	3.0	428	99	0	2551	39	16	9	34	1.81
54071285--54071620	51	6.6	51	76	7	272	29	15	24	30	1.96
54071378--54071625	101	2.5	99	80	7	293	30	16	23	29	1.96
54071284--54071618	152	2.2	152	91	0	535	29	15	24	29	1.96
54089664--54089714	23	2.2	23	89	6	77	29	9	19	41	1.84
54091227--54091714	50	9.6	50	88	2	672	21	30	21	26	1.99
54094762--54094812	23	2.2	23	86	6	68	27	9	21	41	1.84
54098554--54098596	16	2.7	15	78	7	50	46	4	0	48	1.22
54105026--54105117	40	2.3	40	84	3	114	25	16	25	33	1.96
54105045--54105263	82	2.7	82	83	6	257	27	15	24	31	1.95
54105017--54105283	41	6.5	41	74	10	199	25	15	25	33	1.95
54114103--54114341	41	5.9	40	75	10	189	25	14	27	33	1.94
54114103--54114335	82	2.9	82	83	3	276	25	14	27	33	1.94
54114094--54114361	41	6.6	39	73	10	180	24	14	27	33	1.94
54121519--54121657	51	2.7	50	86	4	190	30	15	24	30	1.95
54121519--54121689	51	3.4	51	78	4	184	30	14	25	30	1.94
54123830--54123872	17	2.4	18	84	3	52	11	16	2	69	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54123885--54123948	27	2.4	27	81	5	76	14	17	0	68	1.21
54123887--54123948	26	2.3	29	75	13	69	14	16	0	69	1.19
54124842--54124897	21	2.9	19	80	15	62	21	8	5	64	1.42
54126366--54126465	31	3.2	31	81	9	112	49	15	11	25	1.77
54129754--54129817	32	2.0	33	93	3	112	50	10	12	26	1.73
54142556--54142616	28	2.2	28	91	2	97	31	22	22	22	1.99
54142937--54143161	27	8.3	27	83	4	267	19	19	22	38	1.93
54145851--54145916	20	3.2	20	75	12	80	16	34	13	34	1.88
54145827--54146089	41	6.4	41	81	3	260	19	29	14	36	1.91
54145944--54146089	21	7.1	21	63	10	68	19	29	16	34	1.93
54145985--54146037	19	2.7	20	75	16	56	16	35	16	30	1.92
54145857--54146089	123	1.9	123	84	5	319	19	29	14	36	1.91
54148966--54149001	17	2.1	18	94	5	65	27	0	13	58	1.36
54149453--54149498	19	2.3	20	96	3	85	23	10	17	47	1.79
54152684--54152738	28	2.0	28	100	0	110	34	14	7	43	1.73
54156658--54156691	17	1.9	18	88	5	52	35	5	17	41	1.74
54156984--54157059	38	2.0	39	94	2	136	26	7	21	44	1.79
54162232--54162277	24	1.9	24	95	0	83	36	19	13	30	1.90
54164770--54164816	10	4.7	10	78	17	53	23	31	17	27	1.96
54164767--54164816	20	2.5	20	96	0	91	26	30	18	26	1.98
54173188--54173253	25	2.6	25	92	0	105	34	15	21	28	1.93
54173190--54173266	25	3.1	25	86	3	75	32	18	19	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54177409--54177438	15	2.0	15	93	0	51	13	6	36	43	1.70
54180288--54180484	102	1.9	101	90	0	304	36	11	27	24	1.89
54182954--54183009	20	2.8	19	89	7	85	23	30	17	28	1.97
54186218--54186246	8	3.6	8	100	0	58	0	13	0	86	0.58
54189796--54189843	20	2.4	20	85	0	60	37	35	10	16	1.83
54204547--54204903	44	7.6	45	65	19	124	32	18	21	27	1.97
54204504--54204923	142	3.0	142	95	0	732	32	17	22	27	1.96
54204674--54204860	98	1.9	97	80	6	216	32	19	21	27	1.97
54206761--54206799	15	2.4	16	83	12	53	28	7	2	61	1.37
54207755--54207788	17	1.9	18	94	5	61	58	8	11	20	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203