genome.fa.s17.2.7.7.80.10.50.1000.179.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  179  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56906432--56906679	44	5.7	43	72	16	149	28	23	20	28	1.99
56906282--56906687	217	1.9	218	90	1	645	27	22	21	29	1.99
56906524--56906680	44	3.7	44	78	7	153	29	22	21	26	1.99
56907113--56907188	9	8.4	9	78	5	82	26	11	22	39	1.88
56907113--56907188	27	2.8	27	78	7	91	26	11	22	39	1.88
56907477--56907662	50	3.7	50	72	0	156	24	24	22	29	1.99
56907808--56908025	88	2.5	89	85	3	280	22	26	24	27	2.00
56912863--56912927	21	3.0	22	84	13	82	53	6	3	36	1.41
56912842--56912952	25	4.6	23	75	19	84	54	7	1	36	1.38
56916615--56916662	21	2.3	21	82	7	62	35	41	16	6	1.74
56916630--56916670	21	1.9	21	85	5	55	34	43	17	4	1.70
56916791--56916852	34	1.9	31	92	0	79	41	4	8	45	1.55
56920050--56920581	126	4.2	126	95	0	895	27	22	18	32	1.97
56920621--56920922	95	3.2	94	80	5	306	40	19	3	36	1.70
56920621--56920895	94	2.9	96	81	6	292	40	18	4	37	1.70
56927227--56927265	20	1.9	21	85	15	55	43	15	23	17	1.87
56929579--56929624	23	2.1	23	88	8	69	43	2	4	50	1.34
56931490--56931582	47	2.0	47	86	0	132	31	16	17	35	1.92
56935817--56935932	54	2.2	54	98	1	225	28	25	0	45	1.54
56935870--56935913	22	2.1	20	83	8	52	27	29	0	43	1.55
56935817--56935945	54	2.4	54	93	3	210	27	26	0	45	1.59
56937350--56937389	19	2.1	19	90	0	62	32	2	5	60	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56949798--56950258	44	10.5	44	71	10	230	31	21	22	25	1.98
56949801--56950014	86	2.5	88	85	6	267	30	23	23	22	1.99
56950245--56950342	44	2.2	44	81	0	115	30	21	20	27	1.98
56949858--56950370	262	2.0	261	85	4	703	31	20	23	25	1.98
56952060--56952103	23	2.0	22	86	8	63	34	4	4	56	1.40
56952117--56952167	15	3.5	15	71	15	52	29	1	3	64	1.22
56952117--56952175	29	2.1	27	90	6	91	30	1	3	64	1.20
56952545--56952579	15	2.3	15	95	0	61	22	0	11	65	1.24
56956550--56956586	13	2.8	13	95	0	65	51	8	16	24	1.71
56959255--56959452	50	3.8	52	82	6	197	24	28	20	26	1.99
56959255--56959441	100	1.8	105	82	6	249	24	28	20	26	1.99
56962576--56962672	43	2.3	43	78	3	106	27	24	17	29	1.97
56964893--56965263	123	3.0	122	82	4	440	31	18	23	26	1.97
56966547--56966618	36	2.0	37	88	2	110	25	1	41	31	1.64
56967063--56967642	270	2.1	270	87	1	804	34	14	18	32	1.92
56967408--56967875	233	2.0	233	87	1	679	35	14	20	30	1.92
56967143--56968131	503	2.0	502	82	4	1213	33	15	19	31	1.93
56968577--56968700	60	2.1	60	92	4	207	27	7	24	41	1.81
56969081--56969133	23	2.3	23	78	15	65	9	22	11	56	1.63
56970169--56970221	20	2.8	20	83	11	58	39	3	1	54	1.29
56970352--56970449	13	7.5	13	76	8	83	41	10	3	44	1.53
56970468--56970844	9	43.4	9	68	16	206	41	21	2	34	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56970475--56970561	25	3.4	25	76	12	88	47	21	1	29	1.59
56970505--56970602	41	2.4	41	87	3	135	45	21	2	30	1.63
56970613--56970646	16	2.1	16	94	0	59	44	17	2	35	1.64
56970635--56970666	16	2.0	16	100	0	64	43	25	0	31	1.55
56970696--56970844	25	5.8	25	75	7	129	41	22	2	33	1.68
56976585--56976740	85	1.8	84	86	4	224	29	19	26	24	1.98
56976568--56976742	42	4.1	43	81	7	189	28	18	28	25	1.98
56984663--56984702	11	3.6	11	79	0	53	20	15	7	57	1.61
56984743--56984802	30	2.0	30	93	0	102	28	5	8	58	1.48
56991801--56992162	43	8.4	43	79	5	329	28	28	17	25	1.97
56993024--56993297	23	11.9	22	74	14	196	39	22	6	32	1.79
56993024--56993297	46	5.9	46	80	8	308	39	22	6	32	1.79
56997220--56997272	21	2.5	21	84	6	63	33	47	0	18	1.49
56997233--56997279	7	6.7	7	90	0	76	31	53	0	14	1.42
56997586--56997619	14	2.4	14	95	0	59	47	29	0	23	1.52
56997878--56997923	20	2.4	19	85	7	58	65	4	4	26	1.30
56997932--56998290	41	8.8	41	84	4	388	28	26	22	22	1.99
57003040--57003067	3	9.3	3	100	0	56	0	32	0	67	0.91
57003319--57003353	16	2.2	16	89	0	52	37	40	8	14	1.76
57003406--57003470	30	2.2	30	91	0	103	30	27	4	36	1.77
57004328--57004470	63	2.3	63	100	0	286	25	8	18	46	1.77
57012096--57012121	3	8.7	3	100	0	52	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57017468--57017497	13	2.4	12	94	5	51	46	6	0	46	1.29
57017849--57017891	15	2.8	16	83	16	63	55	4	2	37	1.33
57018841--57018903	23	2.7	24	90	2	92	15	14	50	19	1.77
57019090--57019141	27	1.9	27	84	7	70	17	3	9	69	1.31
57019106--57019155	22	2.3	22	85	0	64	16	4	6	74	1.17
57019416--57019642	50	4.5	50	72	3	170	23	21	24	30	1.99
57019408--57019676	101	2.7	101	85	5	343	24	21	25	28	1.99
57019507--57019658	50	3.0	50	71	0	142	22	21	26	28	1.99
57019831--57019953	44	2.8	44	86	2	167	28	21	19	30	1.98
57019665--57020113	233	1.9	233	97	0	844	28	19	18	33	1.96
57020102--57020625	131	4.0	129	86	3	642	23	25	21	29	1.99
57021866--57021915	22	2.3	21	90	10	75	14	14	0	72	1.14
57021866--57021915	7	7.0	7	88	8	75	14	14	0	72	1.14
57027078--57027107	13	2.4	12	94	5	51	46	6	0	46	1.29
57027463--57027502	14	2.6	14	85	14	53	55	5	2	37	1.35
57028701--57028752	27	1.9	27	84	7	70	17	3	9	69	1.31
57028717--57028766	22	2.3	22	85	0	64	16	4	6	74	1.17
57029180--57029270	23	4.0	23	85	0	119	26	27	17	28	1.98
57032439--57032495	11	4.8	11	83	14	60	57	0	0	42	0.98
57032439--57032483	14	3.4	13	85	11	56	57	0	0	42	0.98
57032440--57032498	25	2.3	26	88	5	84	57	0	0	42	0.98
57033809--57033866	27	2.1	27	80	0	62	17	5	12	65	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57033818--57033874	27	2.1	27	90	0	87	14	3	14	68	1.34
57039087--57039218	50	2.6	52	77	17	141	37	12	15	34	1.84
57042724--57042767	17	2.7	15	83	13	52	59	0	4	36	1.18
57043721--57043871	20	7.6	20	71	4	117	19	27	19	33	1.96
57043924--57043971	19	2.5	19	86	3	69	10	22	22	43	1.84
57044159--57044291	60	2.2	60	81	2	160	18	29	20	31	1.96
57044146--57044297	20	7.6	20	71	2	117	20	28	19	31	1.97
57047764--57047804	21	2.0	21	90	0	64	31	2	4	60	1.30
57055643--57055690	17	2.8	17	87	0	78	25	25	4	45	1.71
57059555--57059604	17	2.9	17	87	0	82	24	28	6	42	1.78
57062783--57062833	6	8.5	6	77	16	52	15	1	15	66	1.34
57062783--57062839	18	3.2	17	78	16	53	15	1	14	68	1.29
57067102--57067348	50	4.8	50	78	4	210	28	21	26	23	1.99
57070803--57070998	51	3.9	51	78	4	191	24	15	27	32	1.95
57070913--57070993	26	3.2	26	62	28	64	23	13	28	34	1.93
57070995--57071089	45	2.1	45	86	0	136	29	17	21	31	1.96
57076682--57076723	21	2.1	20	86	8	59	9	16	4	69	1.33
57078509--57078566	22	2.5	24	72	13	59	62	5	5	27	1.38
57078551--57078579	12	2.4	12	100	0	58	58	0	6	34	1.25
57085814--57085854	22	1.9	21	85	5	55	24	4	12	58	1.53
57090133--57090226	20	4.7	19	75	5	71	10	29	20	39	1.86
57091315--57091375	25	2.4	25	94	5	104	29	19	21	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57097341--57097403	29	2.2	29	88	8	94	33	19	12	34	1.89
57097435--57097462	13	2.2	13	100	0	56	21	25	7	46	1.76
57098619--57098663	21	2.1	22	83	4	56	57	0	4	37	1.19
57100814--57100869	3	18.7	3	100	0	112	0	33	0	66	0.92
57102572--57102630	30	2.0	29	83	12	75	50	11	5	32	1.61
57102937--57102976	15	2.7	15	96	0	71	22	27	5	45	1.73
57117920--57118097	27	6.6	27	84	3	205	29	28	15	26	1.96
57117941--57118096	82	1.9	81	88	3	233	29	28	15	26	1.96
57118579--57118605	12	2.2	12	100	0	54	40	0	7	51	1.30
57124910--57124950	17	2.3	17	83	8	55	51	0	2	46	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203