genome.fa.s17.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  151  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47997221--47997268	24	2.0	24	83	4	60	52	0	0	47	1.00
48000828--48000866	20	2.0	20	85	5	53	25	7	10	56	1.59
48001070--48001128	22	2.5	24	72	25	63	42	8	20	28	1.81
48003029--48003070	18	2.4	17	88	11	59	76	2	14	7	1.10
48004021--48004185	83	2.0	83	97	0	312	26	18	16	37	1.93
48008805--48008868	29	2.4	27	82	10	78	62	3	0	34	1.11
48013848--48013883	18	2.0	18	89	10	56	77	5	0	16	0.94
48014199--48014231	15	2.1	16	88	5	50	48	3	0	48	1.17
48014622--48014736	35	3.4	34	85	7	162	19	21	20	39	1.93
48028393--48028490	40	2.7	37	82	17	125	64	0	2	33	1.05
48028399--48028515	50	2.3	50	83	7	137	68	0	1	29	1.00
48028448--48028497	24	2.3	21	83	13	57	66	0	2	32	1.03
48028428--48028539	50	2.3	49	87	9	158	65	0	1	33	1.03
48032600--48032645	21	2.1	22	84	11	60	32	19	6	41	1.77
48036981--48037064	44	1.9	44	87	0	123	30	14	22	32	1.94
48037031--48037242	43	5.0	44	78	6	197	28	15	25	30	1.96
48037050--48037211	85	1.9	87	81	8	197	26	16	26	30	1.97
48054596--48054747	81	1.8	84	80	6	186	33	31	6	28	1.83
48068913--48068950	18	2.1	18	100	0	76	34	28	15	21	1.94
48075378--48075407	15	1.9	16	93	6	53	33	0	13	53	1.40
48083053--48083172	39	2.9	39	82	13	111	20	21	20	37	1.94
48083080--48083229	45	3.3	45	85	1	194	20	20	19	40	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48083209--48083257	6	7.8	6	79	6	53	18	24	16	40	1.90
48083860--48083893	9	3.8	9	92	0	59	17	0	32	50	1.47
48084713--48084875	43	3.8	42	79	11	181	32	28	16	22	1.96
48084713--48084875	85	1.9	84	82	9	206	32	28	16	22	1.96
48091403--48091439	2	18.5	2	100	0	74	0	0	48	51	1.00
48103501--48103559	29	2.1	27	84	9	75	27	16	3	52	1.60
48103922--48103981	19	3.2	19	76	9	68	60	0	0	40	0.97
48103930--48103986	18	3.1	18	78	11	71	54	0	0	45	0.99
48103988--48104061	19	3.7	19	74	13	69	68	4	0	27	1.07
48103988--48104061	10	7.4	10	73	11	53	68	4	0	27	1.07
48103904--48104061	10	16.4	9	65	17	52	64	1	1	32	1.12
48103959--48104062	29	3.5	30	76	8	97	64	2	0	31	1.15
48104010--48104071	29	2.1	29	84	0	79	66	4	1	27	1.21
48104229--48104276	19	2.5	19	81	15	55	33	10	0	56	1.34
48104308--48104369	19	3.2	19	84	6	79	30	4	4	59	1.39
48104702--48104726	13	1.9	13	100	0	50	64	0	0	36	0.94
48106648--48106675	7	4.0	7	100	0	56	42	0	28	28	1.56
48110868--48110892	12	2.1	12	100	0	50	44	0	0	56	0.99
48112046--48112087	22	2.0	22	90	4	68	61	21	7	9	1.50
48113015--48113040	12	2.2	12	100	0	52	7	15	30	46	1.74
48113047--48113166	40	3.1	38	78	10	127	35	20	20	24	1.96
48113219--48113333	41	2.8	41	84	7	155	19	22	26	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48114152--48114224	33	2.2	33	87	4	103	17	6	45	30	1.75
48119209--48119255	25	1.9	25	83	12	62	12	2	19	65	1.35
48119674--48119790	43	2.7	43	93	0	198	20	17	34	27	1.95
48121009--48121048	20	2.0	20	85	9	55	62	7	0	30	1.23
48121567--48121620	27	2.0	27	92	0	90	40	3	9	46	1.54
48125239--48125277	19	2.1	18	90	4	60	64	5	5	25	1.35
48125245--48125293	22	2.2	22	88	0	71	65	6	2	26	1.27
48125501--48125570	3	23.3	3	100	0	140	67	0	0	32	0.91
48127129--48127325	44	4.4	44	79	5	209	26	24	17	30	1.97
48127129--48127355	88	2.6	87	75	14	212	25	23	19	31	1.98
48127328--48127599	89	3.1	89	88	0	364	22	22	25	30	1.99
48128492--48129522	51	20.3	51	97	0	1852	28	25	16	30	1.96
48132610--48132641	14	2.3	14	94	0	55	3	15	0	81	0.82
48137139--48137189	16	3.2	16	85	0	66	52	9	13	23	1.70
48138053--48138091	19	2.1	18	90	4	60	64	5	5	25	1.35
48138059--48138107	22	2.2	22	88	0	71	65	6	2	26	1.27
48138315--48138348	3	11.3	3	100	0	68	67	0	0	32	0.91
48145374--48145429	21	2.6	21	74	2	58	25	21	21	32	1.98
48146315--48146393	28	2.8	28	86	0	95	43	16	12	27	1.84
48147584--48147612	5	5.8	5	100	0	58	41	0	0	58	0.98
48147782--48147808	4	6.8	4	100	0	54	77	0	0	22	0.76
48151388--48151432	19	2.3	20	88	11	67	62	13	15	8	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48153044--48153366	88	3.7	88	93	1	513	28	29	21	21	1.98
48153046--48153274	44	5.2	44	65	4	140	28	28	21	20	1.98
48153795--48153916	44	2.8	44	81	5	140	31	19	20	28	1.97
48154358--48154429	19	3.4	21	82	15	87	36	8	15	40	1.77
48154364--48154429	21	3.0	24	85	12	81	36	7	16	39	1.77
48154703--48154762	20	2.9	20	76	14	59	26	1	6	65	1.27
48154909--48154952	17	2.6	17	85	3	63	40	11	0	47	1.39
48155030--48155076	24	2.0	24	87	8	69	31	6	0	61	1.21
48155321--48155389	23	3.2	21	73	26	56	21	4	7	66	1.34
48156699--48156740	17	2.6	16	77	7	50	40	0	4	54	1.21
48161491--48161524	14	2.5	14	95	4	61	14	0	35	50	1.44
48167609--48167634	6	4.3	6	100	0	52	50	15	0	34	1.45
48171841--48171924	26	3.2	26	77	5	89	34	10	16	38	1.84
48180629--48180768	70	2.0	70	100	0	280	40	25	5	28	1.78
48184163--48184192	2	15.0	2	100	0	60	0	0	50	50	1.00
48204584--48204658	39	1.9	39	100	0	150	18	36	5	40	1.74
48204657--48204691	18	1.9	18	88	0	52	5	48	5	40	1.51
48208814--48208952	50	2.6	54	84	7	169	24	30	22	23	1.99
48209301--48209358	30	1.9	30	85	0	80	31	24	6	37	1.82
48225405--48225604	103	2.0	98	79	9	215	37	18	10	34	1.85
48231737--48231766	10	3.0	10	90	0	51	83	0	0	16	0.65
48232376--48232480	45	2.4	44	77	16	112	47	7	20	24	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48232466--48232529	6	10.7	6	96	0	119	53	0	29	17	1.44
48232465--48232546	18	4.6	18	84	4	76	58	0	26	14	1.37
48232691--48232750	26	2.3	26	79	0	66	35	6	15	43	1.72
48236386--48236547	80	2.0	80	98	0	315	19	16	17	46	1.84
48240765--48240879	51	2.2	53	86	4	155	29	20	6	43	1.76
48244352--48244433	25	3.3	25	75	16	89	32	19	20	26	1.97
48250322--48250404	25	3.3	26	83	6	100	34	25	16	22	1.95
48260966--48260994	2	14.5	2	100	0	58	51	48	0	0	1.00
48264344--48264378	2	17.5	2	100	0	70	51	48	0	0	1.00
48268132--48268170	20	2.0	21	85	10	55	46	2	0	51	1.14
48277217--48277392	64	2.8	64	75	4	167	26	22	28	22	1.99
48277914--48278036	60	2.0	60	85	0	165	26	17	16	40	1.89
48282073--48282099	2	13.5	2	100	0	54	51	0	48	0	1.00
48285637--48285678	21	2.0	21	95	0	75	9	11	14	64	1.50
48288452--48288541	44	2.0	44	95	0	162	36	5	22	35	1.78
48294659--48294710	21	2.5	21	90	6	79	46	19	25	9	1.80
48295921--48296070	41	3.7	41	82	6	191	18	18	28	34	1.94
48295916--48296126	38	5.4	38	82	5	244	18	18	28	35	1.94
48295918--48296135	76	2.8	76	85	8	278	18	18	27	34	1.95
48296102--48296150	22	2.2	22	88	0	71	22	18	22	36	1.95
48301486--48301926	114	3.8	113	79	11	458	25	21	25	27	1.99
48302190--48302220	15	2.1	15	93	0	53	19	0	45	35	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48302458--48302504	14	3.3	15	82	8	62	27	0	31	40	1.57
48302488--48302540	21	2.5	22	81	9	65	20	0	39	39	1.53
48302523--48302561	7	5.4	7	81	6	51	17	0	46	35	1.49
48302519--48302561	15	2.9	15	86	3	61	18	0	46	34	1.50
48302506--48302560	22	2.5	22	82	2	58	16	0	47	36	1.47
48308211--48308257	20	2.4	19	79	13	51	59	2	0	38	1.09
48308319--48308634	43	7.4	42	85	3	353	22	18	29	29	1.98
48310372--48310502	55	2.3	58	86	5	178	45	1	3	49	1.26
48312208--48312291	40	2.1	40	84	8	109	35	1	0	63	1.03
48313101--48313142	21	2.0	21	86	13	61	28	0	7	64	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203