genome.fa.s17.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  31  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10426537--10426599	20	3.2	20	71	11	58	50	0	3	46	1.17
10427537--10428011	50	9.5	50	68	2	317	21	26	23	29	1.99
10427479--10428021	100	5.4	100	90	1	809	22	24	23	29	1.99
10443092--10443135	17	2.5	17	82	13	54	61	0	2	36	1.09
10443272--10443322	3	16.7	3	80	11	59	58	0	0	41	0.98
10444442--10444520	31	2.6	32	80	11	87	0	30	0	69	0.89
10444498--10444569	4	18.0	4	79	16	62	0	29	0	70	0.87
10444491--10444569	28	2.9	28	78	14	94	0	30	0	69	0.89
10444443--10444570	64	2.0	64	80	11	147	0	31	0	68	0.90
10444471--10444570	36	2.7	37	80	10	116	0	30	0	70	0.88
10444466--10444569	18	5.7	18	74	18	90	0	29	0	70	0.88
10444724--10444761	19	2.0	19	89	0	58	7	2	7	81	0.96
10444959--10444984	11	2.4	11	100	0	52	50	0	0	50	1.00
10445009--10445122	61	1.9	60	83	5	149	35	6	5	52	1.49
10445881--10445923	22	1.9	23	85	4	61	13	11	13	60	1.59
10446217--10446274	21	2.8	21	76	16	59	43	0	0	56	0.99
10450461--10450503	21	2.0	23	81	9	54	46	11	9	32	1.72
10453661--10453703	18	2.4	17	84	7	50	34	11	6	46	1.67
10453660--10453721	16	3.6	17	80	6	72	38	8	6	46	1.59
10453791--10453837	19	2.6	18	83	10	51	42	2	4	51	1.33
10454453--10454477	9	2.8	9	100	0	50	40	36	12	12	1.79
10458458--10458484	13	2.1	13	100	0	54	40	22	7	29	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10463311--10463344	15	2.3	15	89	0	50	58	0	5	35	1.22
10463394--10463418	13	1.9	13	100	0	50	16	0	0	84	0.63
10470394--10470457	31	2.1	31	96	0	119	21	15	10	51	1.74
10471737--10471793	30	1.9	30	96	0	105	24	5	21	49	1.70
10475546--10475577	15	2.1	15	100	0	64	50	25	6	18	1.70
10486323--10486372	27	1.9	25	92	8	82	40	2	0	58	1.10
10486327--10486386	27	2.3	26	85	5	77	45	1	1	51	1.21
10487476--10487653	87	2.1	87	98	1	349	45	5	7	41	1.57
10494659--10494699	21	2.0	21	90	0	64	29	21	29	19	1.98
10496605--10496638	16	2.1	16	88	0	50	50	14	17	17	1.79
10518192--10518444	25	10.1	25	75	10	169	19	28	18	33	1.95
10518202--10518337	52	2.7	50	80	8	159	17	29	18	34	1.94
10522120--10522150	6	5.2	6	92	0	53	32	3	51	12	1.56
10524628--10524661	17	2.0	17	94	0	59	44	50	0	5	1.26
10529267--10529300	17	2.0	17	94	0	59	44	50	0	5	1.26
10535205--10535244	19	2.1	19	90	0	62	67	5	7	20	1.34
10537199--10537324	51	2.6	48	75	12	123	34	1	0	64	1.03
10537223--10537316	40	2.2	43	81	14	124	34	2	0	63	1.06
10541757--10541803	15	3.0	16	82	14	62	34	17	0	48	1.47
10541757--10541807	16	3.2	16	75	25	54	33	17	0	49	1.47
10549123--10549199	40	1.9	39	84	7	102	29	6	22	41	1.78
10549143--10549229	40	2.2	40	85	8	115	29	6	20	42	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10549429--10549746	45	7.2	44	84	5	362	20	18	20	40	1.92
10549422--10549746	84	3.8	83	81	8	355	20	18	20	40	1.92
10549433--10549746	129	2.4	130	86	4	409	20	18	20	40	1.92
10549730--10549767	6	6.2	6	87	6	58	18	18	15	47	1.83
10549730--10549765	18	1.9	19	94	5	65	19	19	16	44	1.87
10550763--10550845	43	1.9	43	85	0	112	15	24	16	43	1.87
10552419--10552468	27	1.9	25	88	8	73	34	16	26	24	1.95
10552553--10552639	25	3.5	24	79	4	75	32	18	28	20	1.96
10555735--10555924	46	4.1	46	75	1	139	28	22	17	31	1.97
10558479--10558573	25	3.8	25	86	5	122	28	24	24	23	2.00
10558807--10558847	20	2.0	20	85	0	55	56	14	0	29	1.39
10559420--10559446	14	1.9	14	100	0	54	48	22	7	22	1.75
10567853--10567944	25	3.7	24	76	5	85	30	21	21	26	1.99
10567834--10567945	50	2.3	50	76	7	122	32	22	21	24	1.98
10569603--10569671	24	2.9	23	79	12	61	42	5	1	50	1.35
10570634--10570658	5	5.0	5	100	0	50	0	20	0	80	0.72
10577541--10577590	24	2.1	24	96	0	91	22	24	26	28	1.99
10577550--10578452	82	11.0	82	100	0	1806	31	20	19	28	1.97
10580612--10580659	10	4.9	10	76	2	53	66	2	6	25	1.26
10580683--10580718	15	2.5	14	86	8	54	44	8	0	47	1.33
10580812--10580870	27	2.2	27	96	0	109	27	27	10	35	1.89
10583233--10583260	10	2.8	10	100	0	56	39	10	0	50	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10584056--10584566	168	3.0	168	93	0	869	46	19	23	10	1.81
10585117--10585262	74	2.0	74	98	0	283	52	10	2	35	1.47
10585434--10585586	27	5.8	27	67	15	88	43	9	0	47	1.36
10585668--10585710	22	2.0	22	86	9	61	32	4	2	60	1.30
10588583--10588611	15	1.9	15	100	0	58	34	0	27	37	1.57
10590187--10590214	6	4.7	6	100	0	56	32	17	0	50	1.47
10598377--10598449	27	2.8	26	76	12	85	36	13	0	49	1.43
10600174--10600231	30	1.9	31	82	10	75	32	6	5	55	1.49
10600666--10600741	15	5.1	15	69	15	59	44	7	15	31	1.75
10600657--10600741	30	2.9	29	81	10	109	44	7	17	30	1.75
10605322--10605406	30	2.8	29	89	3	116	45	7	20	27	1.76
10608375--10608469	15	6.7	15	72	13	76	24	40	9	26	1.85
10608367--10608427	27	2.3	27	88	5	88	22	42	8	26	1.81
10608375--10608469	42	2.3	42	90	0	154	24	40	9	26	1.85
10608417--10608536	27	4.4	27	79	6	127	22	36	11	29	1.90
10610300--10610368	25	2.7	26	86	8	88	59	2	4	33	1.32
10610350--10610416	19	3.7	18	71	15	57	62	1	2	32	1.19
10610472--10610519	19	2.7	17	81	15	53	66	0	2	31	1.03
10610444--10610501	26	2.2	28	87	9	86	68	1	3	25	1.14
10610449--10610541	29	3.2	28	79	11	82	63	1	2	33	1.13
10610472--10610524	17	3.1	17	76	12	54	64	0	1	33	1.05
10610471--10610544	10	7.9	9	71	16	53	63	0	1	35	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10610491--10610560	29	2.4	29	76	11	72	61	0	5	32	1.20
10610641--10610691	19	2.7	18	77	17	50	64	5	1	27	1.27
10610596--10610680	28	3.0	26	78	10	80	60	3	5	30	1.38
10611150--10611190	14	2.9	15	78	7	50	36	7	14	41	1.74
10611159--10611225	34	1.9	35	84	3	91	32	10	11	44	1.75
10617020--10617130	29	3.8	29	67	21	70	28	5	3	62	1.34
10617031--10617113	28	2.9	28	76	20	82	30	6	3	60	1.38
10617029--10617110	20	4.2	19	69	18	53	29	6	2	62	1.32
10621937--10622319	195	2.0	195	87	1	552	26	13	24	35	1.92
10623858--10623895	3	12.7	3	100	0	76	31	0	0	68	0.90
10623966--10623999	14	2.4	14	90	0	50	41	0	2	55	1.15
10627314--10627416	30	3.4	30	72	24	99	22	47	3	26	1.68
10627310--10627426	60	2.0	60	92	0	198	23	47	5	23	1.72
10627281--10627441	60	2.9	54	80	10	187	21	47	5	25	1.72
10629659--10629805	72	2.0	72	92	2	242	25	12	9	52	1.69
10635487--10635542	24	2.3	24	84	0	67	37	10	21	30	1.87
10635885--10636147	50	5.3	50	68	5	172	33	18	20	27	1.96
10635821--10636408	100	5.9	100	81	2	572	33	19	19	26	1.96
10636107--10636415	50	6.2	50	71	4	158	34	22	17	25	1.96
10635854--10636405	200	2.8	200	80	1	651	33	20	19	26	1.97
10638456--10638599	75	1.9	74	92	1	243	28	19	18	34	1.95
10647906--10647956	3	17.0	3	82	8	59	64	0	33	1	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10648109--10648136	2	14.0	2	100	0	56	0	0	50	50	1.00
10651062--10651114	21	2.5	21	87	0	70	30	7	32	30	1.85
10657801--10657836	16	2.3	15	90	4	54	58	5	2	33	1.36
10660135--10660181	22	2.1	22	84	0	58	61	10	10	17	1.55
10666368--10666435	31	2.2	30	82	10	84	42	5	10	41	1.63
10677521--10677567	17	2.7	18	77	12	53	21	2	4	72	1.12
10679024--10679064	21	2.0	20	85	4	55	17	9	0	73	1.09
10679050--10679115	32	2.1	32	97	0	123	28	19	0	51	1.47
10680189--10680230	17	2.5	17	82	17	61	47	2	0	50	1.14
10683485--10683534	26	1.9	26	84	8	66	32	0	4	64	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203