genome.fa.s17.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  104  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32958840--32958877	19	2.0	20	90	10	62	39	2	0	57	1.12
32958840--32958881	20	2.1	20	86	0	57	40	2	0	57	1.12
32963348--32963427	25	3.2	26	79	13	80	30	20	28	21	1.98
32963380--32963428	25	2.0	25	95	0	89	30	16	28	24	1.96
32963385--32963551	25	6.7	25	78	6	133	32	19	28	19	1.96
32963374--32963551	75	2.4	75	80	7	175	33	19	27	19	1.96
32963385--32963551	50	3.3	50	79	3	158	32	19	28	19	1.96
32966200--32966296	25	3.9	25	77	8	90	21	17	25	35	1.95
32967431--32967456	9	2.9	9	100	0	52	0	0	34	65	0.93
32970562--32970587	9	2.9	9	100	0	52	53	23	0	23	1.46
32976730--32976923	58	3.3	58	74	9	160	23	25	13	37	1.91
32976673--32976923	30	8.5	29	75	6	155	23	25	12	37	1.91
32982692--32982841	73	2.1	73	100	0	300	39	6	5	48	1.52
32982692--32982800	36	3.0	37	69	8	114	38	7	5	48	1.54
32982717--32982836	36	3.3	36	71	8	125	42	5	5	46	1.49
32983900--32983924	13	1.9	13	100	0	50	20	0	0	80	0.72
32984336--32984364	14	2.0	15	93	6	51	31	0	0	68	0.89
33004096--33004145	25	2.0	25	100	0	100	40	16	8	36	1.77
33016523--33016573	26	2.0	27	84	7	70	60	1	0	37	1.08
33016564--33016718	28	5.4	27	71	17	91	64	2	1	30	1.18
33016651--33016692	18	2.3	18	80	19	52	61	2	0	35	1.09
33017973--33018029	24	2.4	24	93	0	96	28	28	15	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33018135--33018448	36	8.7	36	85	0	376	31	13	16	38	1.87
33018135--33018449	108	2.9	108	85	0	432	31	13	16	38	1.88
33018406--33018455	24	2.1	24	88	0	73	26	16	18	40	1.90
33019798--33019846	25	2.0	25	88	4	73	40	26	18	14	1.89
33036694--33036735	20	2.1	20	90	0	66	21	2	16	59	1.48
33038878--33038922	22	2.0	22	83	8	56	46	4	8	40	1.55
33039793--33039821	14	2.0	15	93	6	51	10	41	0	48	1.37
33047426--33047454	11	2.7	11	94	5	51	62	0	0	37	0.96
33049899--33049946	23	2.1	23	100	0	96	43	27	4	25	1.72
33052255--33052311	25	2.3	24	84	3	78	75	5	0	19	0.99
33052352--33052454	26	4.0	26	82	5	111	61	3	2	32	1.29
33053881--33054866	44	21.5	44	66	16	276	28	20	18	32	1.96
33053881--33054072	89	2.2	89	79	9	212	29	18	18	33	1.95
33055754--33055795	15	3.0	14	86	10	59	2	19	0	78	0.86
33055754--33055786	5	6.8	5	93	6	59	0	18	0	81	0.68
33058028--33058071	19	2.4	18	81	11	54	59	11	13	15	1.62
33059131--33059182	24	2.1	25	82	10	63	55	3	5	34	1.42
33059187--33059264	26	3.0	24	81	11	84	61	3	2	32	1.27
33059187--33059308	52	2.3	51	80	11	129	59	3	5	31	1.37
33065366--33065416	23	2.2	23	89	0	75	27	7	21	43	1.80
33066958--33067228	50	5.3	51	80	10	261	22	30	20	26	1.98
33066952--33067228	100	2.7	103	82	6	289	22	30	20	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33071804--33071850	12	3.9	12	78	10	51	44	17	2	36	1.60
33077611--33077653	10	4.1	10	85	11	50	37	0	4	58	1.19
33078197--33078225	14	2.0	15	93	6	51	10	41	0	48	1.37
33086619--33086675	30	1.9	30	85	7	80	50	3	21	24	1.64
33086931--33086980	11	4.4	11	80	9	55	32	0	4	64	1.12
33088956--33089104	33	4.4	34	68	11	83	34	15	21	28	1.94
33088886--33089116	101	2.3	101	87	0	327	32	15	22	29	1.95
33091180--33091217	19	2.0	19	89	0	58	26	7	28	36	1.84
33092156--33092239	34	2.4	34	86	5	89	40	2	11	45	1.54
33092167--33092239	34	2.1	35	90	7	114	39	0	12	47	1.41
33092580--33092609	14	2.1	14	93	0	51	33	3	0	63	1.11
33095986--33096650	88	7.6	88	87	1	951	24	26	22	26	2.00
33098863--33098906	8	5.4	8	83	5	52	9	9	0	81	0.87
33105021--33105052	9	3.4	9	95	4	55	0	25	0	75	0.81
33105150--33107139	995	2.0	995	100	0	3980	27	11	17	43	1.84
33108758--33108801	22	2.0	22	95	0	79	40	20	0	38	1.53
33115314--33115348	17	2.1	17	94	0	61	37	5	20	37	1.76
33115747--33115806	25	2.5	24	81	10	68	61	3	1	33	1.22
33116451--33116579	9	14.0	9	69	17	61	33	1	2	62	1.17
33116482--33116562	28	2.9	28	82	14	87	33	1	2	62	1.16
33116511--33116583	9	8.0	9	77	13	69	32	1	1	64	1.11
33116492--33116576	18	4.8	18	75	15	70	32	1	1	64	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33118535--33118584	26	1.9	26	84	8	66	20	14	14	52	1.75
33121646--33121688	22	2.0	22	100	0	86	32	18	18	30	1.95
33139290--33139413	30	4.1	30	90	3	178	42	7	23	26	1.80
33139318--33139398	15	5.3	16	68	11	71	44	6	23	25	1.76
33141607--33141645	19	2.1	19	90	0	60	53	0	0	46	1.00
33141784--33141845	32	1.9	33	87	6	92	27	17	4	50	1.67
33147195--33147284	34	2.6	33	87	8	117	37	12	23	26	1.90
33147195--33147322	37	3.6	36	80	13	129	39	12	20	27	1.88
33147199--33147339	37	3.9	35	77	14	117	38	13	19	29	1.89
33147347--33147394	23	2.1	23	84	7	62	45	6	12	35	1.67
33150602--33150643	14	3.0	14	79	6	50	30	0	2	66	1.04
33152689--33152728	18	2.2	18	100	0	80	72	0	5	22	1.04
33152947--33153026	38	2.1	38	97	0	151	27	5	32	35	1.79
33163981--33164030	12	4.1	12	78	19	50	24	36	2	38	1.67
33168264--33168380	32	3.7	32	82	7	141	39	11	9	40	1.73
33170596--33170650	18	2.9	19	72	20	53	63	5	0	30	1.17
33170813--33170919	57	1.9	56	90	5	173	49	10	8	31	1.67
33177232--33177315	42	2.0	42	100	0	168	28	9	16	45	1.79
33181092--33181139	19	2.6	19	76	3	53	37	6	12	43	1.68
33181153--33181243	42	2.1	43	83	4	121	30	6	13	49	1.67
33188302--33188326	6	4.2	6	100	0	50	84	0	0	16	0.63
33195733--33195772	20	2.0	20	85	0	53	42	2	0	55	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33195831--33195855	7	3.6	7	100	0	50	88	0	0	12	0.53
33196707--33196757	25	2.0	25	100	0	102	23	35	7	33	1.84
33201917--33201966	23	2.2	23	85	0	64	42	12	14	32	1.82
33202117--33202157	20	2.0	20	90	0	64	58	0	2	39	1.11
33202124--33202166	10	4.2	10	81	3	50	67	0	2	30	1.03
33202381--33202420	21	1.9	21	85	10	55	30	10	7	52	1.62
33208902--33208973	31	2.4	31	80	2	92	34	13	12	38	1.83
33221361--33221393	15	2.1	16	94	5	59	78	0	15	6	0.93
33227116--33227156	18	2.2	19	91	4	66	43	2	0	53	1.13
33227120--33227167	18	2.7	18	71	12	53	39	2	0	58	1.10
33227163--33227199	19	1.9	19	88	0	56	35	2	0	62	1.10
33227625--33227666	9	4.6	9	82	5	57	69	0	2	28	1.01
33227625--33227666	19	2.3	18	95	4	75	69	0	2	28	1.01
33229822--33229877	12	4.5	12	77	18	53	69	0	12	17	1.18
33229901--33229938	12	3.1	13	92	7	62	78	0	21	0	0.74
33229901--33229939	13	3.1	12	89	10	60	79	0	20	0	0.73
33229900--33229947	15	3.4	14	80	8	53	75	0	25	0	0.81
33231351--33231706	126	2.8	126	95	1	626	40	15	15	28	1.88
33232331--33232421	21	4.3	21	72	15	62	61	2	5	30	1.31
33232345--33232376	17	1.9	17	93	6	57	59	0	3	37	1.13
33233449--33233484	17	2.3	15	90	9	54	8	0	47	44	1.33
33235329--33235405	29	2.8	28	84	5	102	23	23	14	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33235345--33235400	29	1.9	29	96	0	103	23	21	16	39	1.92
33237690--33237743	20	2.7	20	85	5	74	14	31	35	18	1.91
33239681--33239707	5	5.4	5	100	0	54	0	18	0	81	0.69
33239922--33239968	3	16.3	3	91	8	80	70	0	0	29	0.88
33239922--33239968	20	2.3	20	92	7	78	70	0	0	29	0.88
33239922--33239968	23	2.0	23	100	0	94	70	0	0	29	0.88
33239922--33239973	11	4.5	11	90	9	77	69	0	1	28	0.99
33241323--33241420	49	2.0	49	91	0	160	31	19	14	34	1.92
33241996--33242048	27	1.9	28	85	11	74	24	7	7	60	1.50
33243834--33243877	11	4.0	11	82	11	54	31	0	6	61	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203