genome.fa.s17.2.7.7.80.10.50.1000.200.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  200  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63913870--63913968	52	2.0	52	80	11	118	45	6	2	46	1.39
63913925--63913958	17	2.0	17	94	0	59	44	5	0	50	1.26
63913930--63913977	17	3.0	16	79	17	55	45	6	2	45	1.40
63914031--63914072	15	2.7	16	82	14	52	45	0	2	52	1.13
63914022--63914063	15	2.9	15	82	10	52	47	0	0	52	1.00
63914006--63914319	154	2.0	156	96	1	578	47	5	3	44	1.41
63914172--63914206	18	2.0	17	88	5	52	45	0	0	54	0.99
63914007--63914242	75	3.1	75	66	16	212	46	2	3	47	1.34
63914452--63914508	16	3.6	16	95	0	96	36	36	1	24	1.66
63918443--63918480	19	2.0	19	94	0	67	21	0	2	76	0.91
63919414--63919447	9	3.4	10	88	12	52	38	0	0	61	0.96
63919679--63919772	44	2.1	45	88	5	138	36	25	4	34	1.76
63919754--63919793	16	2.5	16	91	0	71	27	32	5	35	1.79
63923401--63923443	17	2.5	17	80	0	50	44	6	4	44	1.52
63931908--63932000	35	2.7	35	84	0	123	25	17	21	35	1.95
63931886--63932011	18	7.1	18	68	5	87	23	15	22	38	1.92
63949286--63949363	38	2.1	38	92	0	129	43	19	7	29	1.78
63974755--63974779	9	2.8	9	100	0	50	60	12	8	20	1.57
63989780--63989831	23	2.4	21	80	6	50	44	0	7	48	1.31
64000836--64000883	22	2.2	22	78	14	55	66	14	0	18	1.25
64001398--64001529	45	2.9	45	78	1	138	32	15	21	30	1.94
64005603--64005660	30	1.9	31	86	10	84	58	0	3	37	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64015652--64015699	22	2.2	22	92	7	80	43	0	0	56	0.99
64015658--64015701	16	2.7	17	79	6	56	38	0	0	61	0.96
64015827--64016029	85	2.4	85	82	6	234	29	10	13	46	1.77
64018731--64018780	20	2.5	21	83	9	68	28	6	12	54	1.60
64019213--64019257	22	2.2	21	84	11	58	40	0	2	57	1.11
64020491--64020535	23	1.9	23	86	13	65	42	13	13	31	1.82
64022017--64022084	25	2.8	24	68	14	57	61	7	26	4	1.41
64029198--64029227	14	2.1	14	100	0	60	36	13	26	23	1.92
64030828--64030916	43	2.0	44	95	2	162	34	17	4	42	1.70
64032511--64032907	140	3.0	125	79	10	416	27	20	22	29	1.98
64041364--64041411	23	2.0	24	84	11	64	14	25	0	60	1.34
64042426--64042539	42	2.7	42	90	0	165	33	12	15	38	1.85
64042630--64042746	24	4.9	24	76	6	112	29	20	23	25	1.99
64054368--64054407	16	2.5	16	83	0	53	27	2	2	67	1.16
64054660--64054701	18	2.3	18	77	22	52	23	0	4	71	1.05
64055076--64055122	23	2.0	23	87	0	67	46	6	8	38	1.60
64055192--64055264	19	3.9	19	71	11	55	45	5	0	49	1.25
64057947--64057974	14	2.0	14	100	0	56	28	7	14	50	1.69
64096740--64096780	14	2.9	14	88	0	64	24	24	29	21	1.99
64101238--64101304	27	2.5	27	83	13	77	28	14	40	16	1.88
64116431--64116608	27	6.6	27	82	3	115	29	28	15	26	1.96
64116452--64116607	82	1.9	81	88	3	233	29	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64116431--64116607	54	3.3	54	81	6	205	29	28	15	26	1.96
64122976--64123019	11	3.7	11	80	16	52	31	0	2	65	1.05
64130003--64130047	18	2.5	18	85	0	54	46	4	11	37	1.60
64132253--64132307	29	1.9	29	88	3	85	27	16	27	29	1.97
64136806--64136881	25	3.0	25	84	0	98	23	19	21	35	1.96
64140715--64140758	22	2.0	22	91	4	72	40	13	4	40	1.65
64141428--64141465	13	2.9	13	100	0	76	39	28	7	23	1.83
64148591--64148684	28	3.3	30	82	11	117	30	19	23	26	1.98
64148593--64148705	28	4.0	28	86	4	113	29	22	24	23	1.99
64151697--64151755	25	2.4	25	94	2	102	42	3	0	54	1.17
64157856--64157891	17	2.1	17	100	0	72	36	22	16	25	1.94
64160145--64160184	21	2.0	20	85	5	53	42	7	5	45	1.54
64166947--64166999	26	2.0	26	96	0	97	41	15	5	37	1.70
64169041--64169097	26	2.2	26	84	9	73	73	3	1	21	1.07
64172644--64172751	44	2.4	47	70	24	104	52	2	4	39	1.36
64179542--64179584	16	2.7	16	82	7	52	25	2	4	67	1.22
64182136--64182376	50	4.7	50	82	3	239	26	20	28	23	1.99
64182184--64182376	100	1.9	100	88	0	287	26	21	30	22	1.99
64185951--64186005	25	2.2	25	93	0	92	43	7	0	49	1.30
64186241--64186267	13	2.1	13	100	0	54	37	7	22	33	1.82
64187787--64187867	40	2.0	40	92	0	135	46	9	16	27	1.78
64191575--64191638	21	3.0	22	77	9	60	59	4	1	34	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64193371--64193529	44	3.6	44	76	9	162	27	22	20	30	1.98
64193371--64193664	88	3.3	87	73	12	249	28	21	19	31	1.97
64193371--64193570	44	4.4	44	76	12	158	28	24	19	28	1.98
64193186--64193756	182	3.2	177	73	12	493	28	20	18	32	1.96
64194322--64194408	45	1.9	45	84	9	115	51	9	11	27	1.68
64201734--64201780	19	2.5	20	86	6	62	44	10	19	25	1.82
64205249--64205324	14	5.3	14	67	22	50	69	3	1	25	1.13
64207022--64207065	23	1.9	23	90	0	70	43	4	9	43	1.56
64209051--64209108	22	2.6	22	81	7	64	41	17	5	36	1.72
64215783--64215839	10	5.2	11	74	21	57	21	35	0	43	1.52
64215800--64215855	22	2.5	22	97	2	103	28	32	0	39	1.57
64216737--64216761	7	3.6	7	100	0	50	28	0	12	60	1.32
64217397--64217431	18	1.9	18	94	0	61	25	31	8	34	1.86
64217854--64217939	43	2.0	45	90	4	140	37	0	12	50	1.41
64217900--64218010	35	3.2	35	68	10	109	40	0	14	44	1.51
64218035--64218372	29	11.5	29	87	3	471	45	28	0	26	1.54
64218035--64218372	59	5.7	59	88	2	493	45	28	0	26	1.54
64218130--64218172	23	1.9	22	90	4	68	41	27	0	30	1.56
64218035--64218355	88	3.6	88	93	3	538	44	27	0	27	1.54
64218363--64218412	22	2.3	22	96	0	91	50	30	0	20	1.49
64218035--64218397	88	4.1	86	88	4	462	45	28	0	25	1.54
64218420--64218685	116	2.3	116	93	1	464	39	10	7	43	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64218661--64218702	17	2.4	18	80	4	50	42	9	2	45	1.49
64221739--64222066	124	2.6	124	96	0	593	35	20	15	28	1.93
64228328--64228366	12	3.1	12	79	13	51	48	0	5	46	1.24
64230872--64231217	20	17.3	20	79	0	287	11	26	20	41	1.86
64230872--64231217	60	5.8	60	77	0	323	11	26	20	41	1.86
64230872--64231212	100	3.4	100	82	0	340	11	26	20	41	1.87
64231352--64231393	19	2.2	19	83	12	50	45	0	14	40	1.45
64236441--64236473	15	2.2	15	89	10	50	51	12	0	36	1.39
64238892--64238956	28	2.3	28	91	0	103	9	29	38	23	1.85
64243725--64243761	19	1.9	19	88	0	56	37	29	5	27	1.79
64246282--64246314	2	16.5	2	93	0	57	0	0	45	54	0.99
64247094--64247129	14	2.6	14	90	0	54	13	11	8	66	1.44
64248546--64248587	22	1.9	22	95	0	75	30	28	30	9	1.89
64249610--64249668	24	2.5	24	76	13	59	45	6	1	45	1.40
64253388--64253441	22	2.3	23	81	6	56	72	1	16	9	1.19
64256491--64256550	29	2.1	29	93	6	104	53	8	5	33	1.53
64256496--64256557	29	2.1	29	88	5	90	56	6	4	32	1.46
64262640--64262711	36	2.0	35	86	2	99	34	8	27	29	1.86
64263009--64263103	48	2.0	48	89	0	145	17	15	22	44	1.87
64268163--64268257	48	2.0	48	87	0	136	21	15	18	44	1.87
64271660--64271727	3	23.0	3	77	14	70	35	0	2	61	1.11
64271632--64271727	11	8.4	11	73	20	65	34	1	2	62	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64271660--64271734	14	5.3	14	83	13	84	34	1	2	61	1.18
64271633--64271724	25	3.8	25	74	16	77	34	1	2	61	1.15
64272179--64272210	15	2.1	15	94	0	55	34	3	0	62	1.11
64279278--64279333	26	2.2	26	86	0	76	16	12	8	62	1.53
64279312--64279365	24	2.3	23	78	12	56	24	14	1	59	1.46
64283903--64284070	88	1.9	88	83	2	221	27	18	26	27	1.98
64284088--64284187	50	2.0	50	82	7	123	28	26	23	23	1.99
64285833--64285890	20	2.9	22	73	21	56	25	3	5	65	1.29
64292560--64292610	22	2.3	21	81	18	52	45	3	0	50	1.20
64293414--64293460	21	2.2	22	77	11	53	48	0	10	40	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203