genome.fa.s17.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  12  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4061837--4061888	15	3.6	15	80	12	56	53	1	0	44	1.11
4061601--4062013	120	3.4	120	96	1	749	50	5	2	41	1.38
4062054--4062114	28	2.2	28	85	5	81	50	3	0	45	1.17
4062061--4062204	45	3.1	46	64	23	104	48	4	2	44	1.36
4062029--4062236	91	2.3	90	89	4	317	46	4	3	45	1.41
4062054--4062196	44	3.2	43	66	20	103	47	3	2	46	1.34
4062079--4062217	47	3.0	46	68	17	126	48	4	2	43	1.37
4065240--4065303	28	2.3	28	97	0	119	31	9	9	50	1.66
4067928--4068017	30	3.0	30	80	9	94	35	5	13	45	1.67
4071175--4071271	48	2.0	48	97	0	185	45	16	7	30	1.74
4081873--4081914	22	2.0	21	86	9	59	26	7	2	64	1.32
4087758--4087816	29	2.0	29	96	0	109	35	20	5	38	1.75
4088141--4088302	45	3.6	45	79	4	184	35	24	12	27	1.91
4088129--4088291	90	1.8	88	85	2	227	33	25	14	26	1.94
4097695--4097756	30	2.1	30	81	6	72	48	8	3	40	1.49
4099661--4099697	3	12.3	3	100	0	74	0	0	32	67	0.91
4110927--4110966	20	2.0	20	85	0	53	32	10	5	52	1.56
4122824--4122857	17	2.0	17	88	0	50	26	17	17	38	1.92
4125524--4125587	22	2.9	22	100	0	128	26	32	4	35	1.77
4136479--4136530	24	2.2	24	89	0	77	36	3	9	50	1.54
4139735--4139786	24	2.2	24	89	0	77	36	3	9	50	1.54
4139735--4139798	24	2.7	24	85	4	76	35	3	12	48	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4151819--4151887	33	2.1	33	97	0	129	34	14	2	47	1.59
4153486--4153519	4	8.5	4	100	0	68	26	0	0	73	0.83
4153785--4153981	108	1.8	106	89	4	306	29	16	20	32	1.95
4157688--4157813	54	2.3	54	81	5	130	25	31	23	19	1.98
4169159--4169233	36	2.1	36	82	0	87	24	18	8	49	1.74
4174951--4174994	21	2.2	20	87	4	61	13	11	0	75	1.06
4175760--4175821	9	7.0	9	77	3	63	16	4	0	79	0.90
4175808--4175884	34	2.3	33	82	12	104	36	6	2	54	1.40
4179654--4179697	21	2.2	20	87	4	61	13	11	0	75	1.06
4180463--4180524	9	7.0	9	77	3	63	16	4	0	79	0.90
4180516--4180587	34	2.2	33	87	5	101	34	6	2	55	1.41
4182046--4182079	16	2.1	16	100	0	68	17	17	23	41	1.90
4182522--4182563	19	2.2	19	83	8	50	28	21	9	40	1.84
4183244--4183339	31	3.1	31	95	3	174	45	13	9	31	1.75
4186500--4186524	11	2.3	11	100	0	50	0	8	0	92	0.40
4186486--4186557	33	2.2	33	87	5	101	0	12	9	77	0.98
4186489--4186586	9	11.4	9	76	13	52	1	11	9	78	1.01
4186486--4186577	19	4.6	19	71	14	69	1	10	8	79	0.99
4187132--4187227	31	3.1	31	95	3	174	45	13	9	31	1.75
4190090--4190131	7	6.0	7	79	20	52	71	0	14	14	1.15
4190090--4190131	21	2.0	21	90	0	66	71	0	14	14	1.15
4190087--4190131	14	3.1	15	81	18	60	68	0	15	15	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4191415--4193114	89	19.1	90	84	6	1370	31	16	23	28	1.96
4191483--4193071	267	6.0	266	84	6	1539	31	16	23	28	1.96
4193841--4193879	17	2.3	17	86	8	53	15	0	2	82	0.79
4194003--4194046	21	2.2	20	87	4	61	13	11	0	75	1.06
4194657--4194705	12	4.1	12	78	0	53	26	0	8	65	1.20
4194820--4194858	9	4.1	9	87	9	51	10	5	0	84	0.76
4194820--4194848	10	3.0	10	95	5	51	10	0	0	89	0.48
4194820--4194858	19	2.0	20	90	5	62	10	5	0	84	0.76
4197086--4197136	21	2.5	20	77	3	57	9	11	3	74	1.19
4200324--4200358	18	2.0	18	88	5	54	60	0	2	37	1.12
4201088--4201147	28	2.2	28	87	3	86	61	6	5	26	1.42
4203720--4203760	3	13.3	3	84	5	55	36	0	2	60	1.10
4212981--4213119	43	3.2	43	63	11	102	22	20	29	27	1.99
4212928--4213720	88	9.0	88	92	0	1261	25	19	27	27	1.99
4212928--4213720	263	3.0	264	91	2	1256	25	19	27	27	1.99
4213711--4213834	44	2.8	45	81	11	125	28	19	25	27	1.99
4213836--4214288	88	5.1	88	91	1	703	25	19	27	27	1.99
4213900--4214131	44	5.3	44	67	4	162	22	20	27	29	1.99
4214279--4214406	44	2.9	45	83	11	142	28	19	25	26	1.99
4213268--4214409	568	2.0	568	98	0	2185	26	19	26	28	1.99
4235901--4235960	30	2.0	31	86	3	86	21	38	0	40	1.54
4236048--4236108	20	3.2	19	78	15	56	22	34	0	42	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4243134--4243232	21	4.8	21	73	8	69	52	12	10	25	1.69
4243281--4243324	20	2.1	21	91	4	72	56	13	6	22	1.61
4249904--4249954	19	2.7	20	74	20	54	11	23	5	58	1.55
4250128--4250351	67	3.4	66	79	3	261	27	21	14	36	1.93
4254522--4254555	17	1.9	17	88	5	50	47	11	11	29	1.76
4261995--4262054	22	2.7	23	81	2	77	38	3	3	55	1.33
4269638--4270039	47	8.6	47	97	0	723	32	8	30	29	1.86
4270158--4270236	37	2.1	37	90	0	122	24	18	31	25	1.98
4275426--4275709	146	1.9	148	85	3	394	27	16	13	42	1.86
4284161--4284226	33	2.0	33	100	0	132	42	6	24	27	1.78
4288819--4289086	29	9.2	29	82	6	283	21	23	14	40	1.90
4288848--4289086	58	4.1	58	87	5	313	20	24	14	40	1.90
4299325--4299391	25	2.7	25	77	9	73	26	20	22	29	1.99
4300554--4300578	11	2.3	11	100	0	50	28	40	0	32	1.57
4303649--4303719	31	2.3	32	83	9	85	36	0	4	59	1.17
4308837--4308870	16	2.1	16	94	0	59	20	23	26	29	1.99
4308787--4308911	67	1.9	66	88	5	189	24	17	27	30	1.97
4311044--4311074	15	2.1	15	93	0	53	16	3	0	80	0.83
4319777--4319805	15	1.9	15	100	0	58	34	27	6	31	1.83
4324458--4324810	27	13.1	27	80	5	297	41	21	17	19	1.91
4324956--4325062	26	4.1	26	86	4	144	16	18	24	40	1.91
4326501--4326547	24	1.9	25	86	4	69	40	0	34	25	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4327158--4327510	27	13.1	27	79	5	297	41	21	17	19	1.90
4327656--4327762	26	4.1	26	86	4	144	16	18	24	40	1.91
4329201--4329244	12	3.7	12	76	11	54	38	0	38	22	1.55
4329201--4329247	24	1.9	25	91	4	78	38	0	36	25	1.56
4329943--4330244	81	3.7	79	80	6	293	43	20	16	20	1.88
4329954--4330246	27	10.9	27	75	7	236	42	20	16	20	1.89
4330392--4330472	26	3.1	26	85	7	110	17	19	23	39	1.92
4330574--4330634	30	2.0	31	93	3	106	26	26	22	24	2.00
4342709--4343050	27	12.7	27	84	2	366	34	19	20	26	1.96
4343115--4343161	24	1.9	25	91	4	78	17	8	25	48	1.74
4343114--4343168	24	2.3	24	84	6	76	21	9	23	45	1.80
4343245--4343297	27	2.0	27	82	14	65	20	28	22	28	1.99
4343288--4343339	26	2.0	26	84	0	68	15	19	26	38	1.91
4343344--4343642	32	9.4	32	74	11	220	19	21	23	36	1.95
4343341--4343628	64	4.5	64	83	4	330	19	21	23	35	1.96
4343341--4343591	96	2.6	96	78	2	281	18	21	24	35	1.96
4363618--4363648	15	2.1	15	100	0	62	12	25	41	19	1.87
4367006--4367036	16	1.9	16	100	0	62	38	0	9	51	1.35
4369057--4369102	24	2.0	24	83	12	60	52	2	4	41	1.33
4374085--4374190	34	3.2	33	77	10	117	52	3	0	42	1.25
4374082--4374207	66	1.9	66	85	4	173	54	3	0	41	1.22
4374348--4374482	50	2.7	50	91	1	216	35	22	14	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4375008--4375045	16	2.3	16	95	4	67	18	0	23	57	1.40
4375049--4375161	30	3.8	30	87	3	147	18	7	12	61	1.52
4375152--4375183	16	2.0	16	93	0	55	12	3	25	59	1.48
4375050--4375163	6	19.0	6	87	3	131	18	7	13	61	1.54
4376402--4376444	21	2.0	21	90	0	68	44	2	16	37	1.60
4376890--4376949	26	2.3	26	88	8	88	15	25	20	40	1.90
4377035--4377083	25	2.0	25	87	0	71	20	28	18	32	1.96
4380746--4380811	28	2.5	28	80	7	84	28	6	13	51	1.65
4381481--4381571	21	4.3	21	75	5	85	37	35	10	16	1.84
4381538--4381591	21	2.4	21	84	9	63	33	40	11	14	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203