genome.fa.s17.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  152  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48321302--48321340	13	3.0	13	78	14	53	25	15	7	51	1.70
48324417--48324457	21	2.0	21	85	9	57	14	21	29	34	1.93
48328799--48328831	12	2.8	12	86	4	50	18	0	12	69	1.18
48333912--48334229	41	7.8	40	74	8	216	16	23	22	37	1.93
48333911--48334194	82	3.5	80	80	6	318	16	22	22	38	1.93
48334746--48334783	15	2.5	15	86	0	58	18	0	44	36	1.50
48334719--48334786	15	4.9	14	74	13	52	22	0	36	41	1.54
48336511--48336547	10	3.7	10	92	0	65	43	0	13	43	1.44
48339081--48339105	13	1.9	13	100	0	50	40	24	0	36	1.55
48339170--48339295	34	3.7	34	79	10	148	49	11	0	38	1.44
48339219--48339253	13	2.7	13	90	0	52	54	5	0	40	1.24
48339185--48339287	22	4.4	22	74	16	84	48	10	0	39	1.44
48339318--48339448	9	15.9	9	69	17	70	44	16	3	35	1.64
48339310--48339435	25	5.2	25	71	9	91	46	15	2	34	1.59
48339324--48339443	16	7.9	16	66	19	78	45	16	2	35	1.61
48344874--48345004	66	2.0	66	86	3	183	41	19	24	13	1.88
48344899--48345036	66	2.1	66	83	5	172	42	16	26	13	1.86
48345038--48345105	21	3.2	21	80	0	82	30	17	44	7	1.76
48345460--48345761	86	3.5	86	77	6	306	25	19	28	26	1.99
48345450--48345761	43	7.3	43	78	3	243	25	18	28	27	1.98
48345450--48345761	129	2.4	129	78	2	304	25	18	28	27	1.98
48345943--48345985	22	2.0	22	90	0	68	44	27	16	11	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48348144--48348187	21	2.1	21	91	0	70	15	34	43	6	1.74
48353287--48353331	19	2.4	19	79	20	58	20	8	2	68	1.27
48354463--48354489	4	6.8	4	100	0	54	22	0	0	77	0.76
48355128--48355194	3	23.3	3	75	11	52	28	1	5	64	1.26
48355128--48355194	21	3.3	21	86	10	79	28	1	5	64	1.26
48355335--48355364	15	1.9	16	93	6	53	40	3	0	56	1.16
48362369--48362718	148	2.3	148	83	6	393	44	9	16	30	1.79
48368704--48368781	30	2.6	30	93	0	129	26	30	20	21	1.98
48368725--48368789	30	2.2	30	94	0	112	29	29	20	21	1.98
48369338--48369445	53	2.1	52	83	1	135	18	29	21	30	1.97
48371933--48371971	19	2.1	18	85	4	51	20	2	2	74	1.06
48371977--48372020	18	2.5	16	80	20	52	40	0	4	54	1.21
48371982--48372027	18	2.3	20	85	14	69	36	0	6	56	1.25
48371982--48372032	19	2.7	20	85	14	72	33	0	5	60	1.21
48380626--48380791	39	4.2	39	82	0	197	16	15	32	35	1.90
48382826--48383214	70	5.6	70	80	6	375	31	22	18	28	1.97
48382826--48383213	140	2.8	138	82	5	442	31	21	18	28	1.97
48382781--48383251	70	6.8	70	76	8	354	32	22	17	27	1.96
48383420--48383466	18	2.6	18	82	0	58	27	10	12	48	1.74
48386450--48386492	20	2.2	20	86	0	59	25	11	37	25	1.90
48387735--48387766	16	2.0	16	100	0	64	37	18	12	31	1.88
48394371--48394565	41	4.8	41	87	1	257	25	23	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48395191--48395242	21	2.4	22	80	6	70	21	0	40	38	1.53
48395986--48396132	76	1.9	76	95	1	269	46	12	9	31	1.73
48395869--48396080	115	1.8	118	89	7	344	43	12	13	29	1.81
48396163--48396302	74	1.9	74	82	10	178	43	13	10	32	1.78
48395958--48396278	177	1.8	177	91	4	531	45	13	11	29	1.78
48404064--48404174	41	2.7	41	91	0	177	30	29	19	19	1.97
48404232--48404341	40	2.8	40	77	1	114	20	21	20	36	1.95
48405986--48406011	13	2.0	13	100	0	52	53	15	0	30	1.42
48406472--48406862	124	3.1	125	86	3	538	30	15	16	37	1.90
48406914--48407044	68	1.9	69	83	4	169	44	14	0	41	1.45
48406923--48407044	34	3.6	35	78	4	144	43	14	0	41	1.46
48408833--48408872	21	1.9	21	84	0	53	27	27	12	32	1.93
48421727--48421768	21	2.0	21	86	9	59	59	33	7	0	1.25
48422430--48422462	3	11.0	3	100	0	66	66	0	33	0	0.92
48424155--48424199	21	2.1	22	83	4	56	44	4	31	20	1.71
48427499--48427850	196	1.8	190	87	3	524	43	9	11	35	1.74
48427920--48427963	18	2.3	19	85	14	56	59	2	6	31	1.36
48430414--48430516	31	3.4	31	76	10	113	53	3	2	39	1.34
48430411--48430526	61	1.9	61	92	3	198	52	3	2	41	1.32
48433740--48433834	25	3.8	25	90	0	127	20	30	20	29	1.97
48433741--48433837	50	1.9	50	89	0	149	18	29	20	30	1.97
48441299--48441347	25	2.0	25	83	0	62	20	20	18	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48456925--48456951	3	9.0	3	100	0	54	33	0	33	33	1.58
48459756--48459900	74	2.0	74	98	0	281	31	11	32	24	1.91
48464008--48464173	23	6.5	25	72	22	91	52	1	2	43	1.25
48464019--48464045	14	1.9	14	100	0	54	55	0	0	44	0.99
48464070--48464154	23	3.7	23	89	9	120	56	0	1	42	1.07
48464064--48464176	13	8.7	14	68	21	61	53	0	0	45	1.06
48464063--48464154	13	7.7	13	71	24	78	55	0	1	43	1.07
48464140--48464172	18	1.9	18	88	11	52	45	0	0	54	0.99
48464080--48464170	10	8.8	10	70	19	55	56	0	1	42	1.06
48470234--48470286	12	4.4	12	73	17	56	52	3	0	43	1.19
48471938--48471968	16	1.9	16	93	0	53	70	9	9	9	1.33
48476965--48477014	18	2.8	18	90	3	75	18	28	40	14	1.89
48486941--48486988	18	2.7	17	81	9	60	41	4	16	37	1.68
48487346--48487447	20	5.7	18	73	19	72	49	4	2	43	1.39
48487354--48487488	68	2.0	69	92	1	227	50	3	3	42	1.38
48497573--48497606	18	1.9	17	88	5	50	52	8	20	17	1.71
48499662--48499756	13	7.3	13	69	8	59	42	3	18	35	1.67
48510874--48510960	32	2.7	32	85	0	120	28	1	17	52	1.51
48536058--48536221	82	2.0	82	93	0	283	23	21	7	47	1.76
48538530--48538602	26	2.7	27	81	14	89	47	2	0	49	1.15
48538548--48538605	20	2.8	21	82	12	66	44	3	0	51	1.18
48547075--48547136	29	2.1	29	85	5	81	22	17	22	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48548175--48548240	29	2.2	29	81	2	78	45	7	16	30	1.75
48551136--48551199	30	2.1	30	85	5	85	42	7	6	43	1.58
48551194--48551254	30	2.0	30	100	0	122	32	6	9	50	1.61
48551206--48551254	15	3.3	15	72	11	55	28	6	10	55	1.57
48564150--48564209	18	3.4	18	71	13	61	60	1	3	35	1.23
48567593--48567625	17	2.0	16	94	5	57	48	0	9	42	1.35
48567941--48567977	18	2.1	18	100	0	74	54	0	10	35	1.36
48569137--48569198	31	2.0	31	100	0	124	29	16	16	38	1.90
48571109--48571142	6	5.5	6	89	3	50	70	2	0	26	1.01
48572772--48572796	8	3.1	8	100	0	50	52	0	0	48	1.00
48574776--48574805	11	2.7	11	94	0	51	60	16	6	16	1.56
48589794--48589828	16	2.2	16	90	5	54	77	0	2	20	0.90
48589899--48589934	17	2.1	17	94	0	63	75	2	0	22	0.94
48590180--48590239	30	2.0	31	84	15	81	50	0	43	6	1.28
48590864--48590906	12	3.7	12	82	14	54	81	4	13	0	0.84
48593567--48593625	31	1.9	31	89	0	91	28	20	27	23	1.99
48607119--48607186	16	4.2	16	96	0	127	26	0	35	38	1.57
48607167--48607257	45	2.0	45	85	2	121	27	6	28	37	1.82
48607405--48607668	121	2.2	121	97	0	503	47	6	1	44	1.39
48614241--48614268	11	2.5	11	100	0	56	42	10	39	7	1.67
48615278--48615347	27	2.6	27	86	0	104	22	20	22	34	1.97
48627503--48627639	72	2.0	71	82	5	172	36	4	7	51	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48628443--48628494	21	2.5	21	90	0	77	23	21	38	17	1.93
48656315--48656353	20	2.0	20	90	10	62	15	23	5	56	1.59
48656644--48656750	50	2.1	50	84	0	142	21	31	20	26	1.98
48664044--48664082	20	2.0	20	90	10	62	15	23	5	56	1.59
48664729--48664790	32	1.9	32	96	0	115	17	33	3	45	1.65
48672872--48672984	51	2.3	51	81	6	124	47	7	15	29	1.73
48678731--48678760	6	5.0	6	100	0	60	66	0	16	16	1.25
48678687--48678817	69	1.9	69	85	3	183	48	6	18	25	1.72
48687214--48687331	57	2.1	57	96	0	218	33	14	13	38	1.85
48692889--48692945	11	5.2	11	78	0	60	66	12	3	17	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203