genome.fa.s17.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  158  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50180867--50180911	16	2.7	17	82	6	56	40	0	0	60	0.97
50180895--50181024	11	12.4	11	67	25	68	35	2	0	61	1.14
50180888--50181005	42	2.9	41	91	3	193	33	2	0	62	1.14
50180937--50181024	11	8.4	11	72	22	73	36	2	0	61	1.09
50180878--50181012	40	3.3	40	88	5	209	33	2	0	63	1.12
50180959--50180992	17	2.0	17	88	0	50	29	0	0	70	0.87
50181439--50181531	40	2.4	39	81	13	95	48	1	3	47	1.25
50182374--50182404	16	1.9	16	100	0	62	29	0	32	38	1.57
50184757--50184797	19	2.1	20	86	4	57	56	2	9	31	1.45
50189881--50192598	544	5.0	543	92	0	4429	29	14	22	33	1.94
50193481--50193525	21	2.1	21	84	8	56	75	6	17	0	1.01
50212393--50212419	14	1.9	14	100	0	54	14	0	33	51	1.43
50212902--50212969	25	2.8	24	77	6	73	66	4	4	25	1.29
50212848--50213127	48	5.9	50	71	16	177	61	4	4	29	1.34
50212992--50213057	24	2.9	22	82	13	71	62	1	4	31	1.25
50212997--50213057	22	2.7	21	79	18	61	60	1	3	34	1.23
50212967--50213127	26	6.3	25	76	12	141	63	3	3	30	1.25
50212987--50213127	50	2.8	50	87	5	178	63	2	3	31	1.23
50215000--50215266	104	2.6	104	93	0	453	18	20	30	30	1.96
50220290--50220322	14	2.3	15	89	5	50	24	33	15	27	1.95
50223377--50223421	15	3.1	15	79	17	51	48	8	22	20	1.76
50225410--50225494	25	3.5	24	81	7	91	68	3	2	25	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50225479--50225635	50	3.1	47	80	9	145	63	2	3	30	1.26
50225512--50225629	25	4.7	24	77	11	105	61	1	3	33	1.22
50225522--50225654	26	5.3	24	78	12	126	63	2	3	30	1.21
50226839--50226883	15	3.1	15	79	17	51	48	8	22	20	1.76
50228872--50228956	25	3.5	24	81	7	91	68	3	2	25	1.18
50228941--50229097	50	3.1	47	80	9	145	63	2	3	30	1.26
50228974--50229091	25	4.7	24	77	11	105	61	1	3	33	1.22
50228984--50229116	26	5.3	24	78	12	126	63	2	3	30	1.21
50230099--50230141	21	1.9	23	86	13	63	6	18	16	58	1.60
50230706--50230762	24	2.3	23	80	16	62	42	3	7	47	1.47
50232286--50232372	18	4.8	18	70	9	61	37	0	5	56	1.23
50232286--50232341	18	3.2	18	77	10	62	35	0	5	58	1.21
50233308--50233333	3	8.7	3	100	0	52	65	0	0	34	0.93
50234393--50234458	8	7.2	9	69	27	50	33	3	0	63	1.10
50236168--50236427	26	10.0	25	70	18	129	60	4	5	28	1.40
50236168--50236330	75	2.2	74	83	5	195	60	4	6	28	1.43
50236168--50236514	52	6.7	50	70	13	202	59	4	7	28	1.45
50236243--50236345	48	2.1	47	84	8	127	62	6	4	26	1.41
50236269--50236315	23	2.1	23	88	4	69	61	4	6	27	1.39
50236195--50236536	25	13.0	25	71	15	158	59	4	7	28	1.44
50237599--50237632	18	1.9	17	88	5	50	8	11	58	20	1.59
50249511--50249666	50	3.2	49	72	18	139	31	16	22	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50249493--50250324	94	8.9	94	81	2	828	32	19	20	27	1.97
50249485--50250324	188	4.5	188	83	1	932	33	19	20	27	1.96
50249912--50250154	50	5.1	49	67	20	138	32	18	21	27	1.96
50249485--50250323	282	3.0	282	82	1	950	33	19	20	27	1.96
50253331--50253359	3	9.7	3	100	0	58	34	0	0	65	0.93
50255029--50255175	35	4.5	35	72	14	123	37	15	22	24	1.93
50259309--50259338	16	1.9	15	93	6	51	46	10	0	43	1.37
50261477--50261736	140	1.9	140	87	1	387	31	21	20	27	1.97
50263835--50263889	24	2.3	24	87	6	76	20	23	18	38	1.93
50263852--50263916	24	2.7	22	83	11	67	18	23	21	36	1.95
50265177--50265207	5	6.2	5	100	0	62	61	0	38	0	0.96
50272456--50272482	13	2.1	13	100	0	54	29	11	14	44	1.80
50274115--50274169	24	2.3	24	87	0	83	18	25	20	36	1.94
50274115--50274179	24	2.7	24	80	4	69	16	24	20	38	1.93
50289511--50289564	9	5.5	11	80	19	50	68	0	0	31	0.90
50289519--50289557	17	2.3	17	82	8	53	66	0	0	33	0.92
50293591--50293834	124	2.0	124	91	0	398	26	20	11	41	1.87
50298957--50299043	42	2.1	42	82	4	104	19	29	34	16	1.93
50300970--50301197	51	4.6	51	85	6	315	31	48	5	14	1.67
50301100--50301193	45	2.2	42	84	7	109	31	51	5	11	1.61
50301168--50301236	36	1.9	36	90	0	111	27	43	7	21	1.79
50301151--50301323	87	2.0	87	87	4	251	26	47	6	18	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50304099--50304161	27	2.3	27	83	5	74	49	1	0	49	1.10
50308740--50308804	31	2.1	32	82	2	78	56	1	1	40	1.18
50308694--50308776	25	3.4	22	76	18	58	55	0	3	40	1.17
50308632--50308793	59	2.6	63	73	17	158	52	1	4	40	1.34
50311040--50311084	15	3.0	15	77	9	56	66	0	13	20	1.24
50311235--50311297	33	1.9	33	86	0	90	28	14	11	46	1.78
50312017--50312059	21	2.0	21	100	0	86	32	9	18	39	1.83
50312326--50312375	25	2.0	25	100	0	100	36	16	8	40	1.77
50316763--50316868	27	4.0	26	82	6	140	18	15	20	45	1.85
50316750--50316867	54	2.2	54	86	4	168	19	16	19	44	1.86
50320151--50320238	20	4.3	20	74	7	79	11	23	22	42	1.86
50323785--50323841	30	1.9	30	86	10	82	40	5	24	29	1.77
50324055--50324084	13	2.3	13	94	0	51	33	3	13	50	1.58
50324179--50324362	50	3.7	50	88	0	260	26	22	30	19	1.98
50326277--50326301	13	1.9	13	100	0	50	8	0	24	68	1.16
50334041--50334069	10	2.7	11	89	10	51	79	0	20	0	0.74
50334041--50334072	16	1.9	17	93	6	57	78	0	21	0	0.76
50343952--50343992	17	2.4	17	87	0	55	14	17	34	34	1.90
50345072--50345105	3	11.3	3	100	0	68	35	0	0	64	0.94
50345999--50346025	13	2.1	13	100	0	54	29	22	14	33	1.94
50351085--50351109	13	1.9	13	100	0	50	32	16	16	36	1.90
50352863--50352948	43	2.0	44	88	4	131	41	4	2	51	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50354380--50354799	51	8.5	51	78	7	431	30	46	6	15	1.73
50354431--50354589	87	1.8	85	94	0	255	31	45	6	15	1.73
50354321--50354816	138	3.5	139	83	8	620	30	45	7	16	1.74
50354380--50354799	153	2.8	153	87	5	573	30	46	6	15	1.73
50355998--50356104	46	2.5	42	79	11	112	31	3	28	35	1.75
50355999--50356091	44	2.1	46	87	4	136	30	4	29	36	1.77
50356251--50356303	18	2.9	18	94	2	88	58	1	1	37	1.20
50356237--50356376	37	4.2	33	65	27	80	56	2	0	40	1.19
50366806--50366872	27	2.6	27	85	4	93	20	23	2	52	1.61
50369467--50369505	3	13.0	3	100	0	78	66	0	0	33	0.92
50370422--50370472	26	2.0	26	82	14	63	52	9	3	33	1.53
50371365--50371398	16	2.2	16	89	5	52	61	0	5	32	1.20
50374018--50374601	300	1.9	299	89	1	893	31	16	21	30	1.95
50376655--50376740	21	4.0	23	80	11	110	37	24	22	16	1.93
50376655--50376741	44	2.0	41	86	6	120	36	24	21	17	1.94
50378009--50378071	5	12.6	5	96	0	117	60	1	0	38	1.07
50384312--50384360	9	5.4	9	77	0	53	55	4	0	40	1.19
50384312--50384360	18	2.7	18	87	0	62	55	4	0	40	1.19
50385178--50385223	5	9.2	5	95	0	83	60	2	0	36	1.09
50389528--50389584	25	2.3	25	93	0	96	28	22	22	26	1.99
50389826--50389864	21	1.9	20	84	5	51	25	12	17	43	1.85
50394557--50394595	20	2.0	20	89	0	60	35	2	0	61	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50394565--50394610	20	2.3	20	84	0	56	32	4	2	60	1.28
50394591--50394653	30	2.1	30	82	2	74	39	3	3	53	1.33
50396052--50396121	28	2.5	28	85	0	95	20	8	14	57	1.63
50401394--50401693	27	11.2	27	83	1	334	19	18	20	41	1.91
50401412--50401685	80	3.4	81	84	1	336	18	18	21	41	1.91
50401394--50401696	107	2.8	107	83	4	360	19	18	20	41	1.90
50403590--50403709	28	4.3	28	88	5	190	31	23	23	21	1.98
50403816--50403867	26	2.0	26	92	0	86	36	25	21	17	1.94
50403860--50404081	109	2.0	109	95	0	399	31	31	17	20	1.95
50404196--50404271	27	2.8	27	83	2	98	22	17	19	40	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203