genome.fa.s17.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  162  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51287852--51287896	22	2.0	22	91	0	72	48	15	2	33	1.57
51291627--51291671	22	2.0	22	91	0	72	48	15	2	33	1.57
51293679--51293792	52	2.2	52	81	6	133	26	14	14	44	1.83
51295252--51295313	16	4.1	15	75	24	60	48	14	1	35	1.54
51295247--51295312	31	2.1	31	94	0	114	48	13	1	36	1.52
51295247--51295297	15	3.4	14	73	26	50	49	13	1	35	1.54
51295585--51295816	50	4.7	50	82	3	155	23	27	20	28	1.99
51295621--51295816	50	3.9	50	84	2	223	23	28	20	27	1.99
51295634--51295815	100	1.8	100	85	0	256	22	29	20	27	1.99
51302733--51302777	20	2.1	22	84	8	58	53	0	4	42	1.21
51303433--51303472	18	2.2	18	86	0	53	72	5	0	22	1.04
51303979--51304017	21	1.9	20	89	5	60	46	25	5	23	1.73
51310358--51310428	35	2.0	35	100	0	142	32	30	11	25	1.91
51316036--51316233	100	2.0	100	97	0	378	43	13	8	34	1.74
51319189--51319215	13	2.1	13	100	0	54	14	0	0	85	0.61
51320019--51320071	6	8.5	6	80	15	63	16	0	1	81	0.79
51320018--51320072	25	2.2	26	78	18	64	20	0	1	78	0.85
51320019--51320071	20	2.8	19	81	10	65	16	0	1	81	0.79
51325000--51325054	13	4.4	13	72	25	55	58	5	14	21	1.57
51325968--51326006	20	2.0	19	90	5	60	58	5	0	35	1.20
51333110--51333149	20	2.0	20	90	4	64	60	5	0	35	1.19
51333122--51333173	25	2.0	26	85	3	70	50	1	1	46	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51340553--51340664	43	2.6	43	80	8	129	27	26	21	24	1.99
51343573--51343616	18	2.4	18	88	7	63	40	43	2	13	1.57
51343738--51343795	9	6.4	10	74	18	56	32	8	17	41	1.80
51343738--51343795	27	2.1	27	83	0	71	32	8	17	41	1.80
51343738--51343795	18	3.2	18	85	9	66	32	8	17	41	1.80
51347136--51347181	22	2.1	22	100	0	92	21	0	26	52	1.47
51348342--51348475	37	3.4	40	71	8	121	24	15	24	35	1.94
51350094--51350137	2	22.0	2	100	0	88	50	50	0	0	1.00
51356732--51356799	22	3.1	21	75	10	66	41	29	2	26	1.70
51368936--51368976	21	2.0	21	90	9	68	63	2	0	34	1.08
51370532--51370589	26	2.3	26	85	5	75	51	3	3	41	1.35
51370958--51370999	9	4.7	9	88	8	50	73	2	0	23	0.94
51370964--51371153	9	20.2	9	72	17	95	62	1	3	32	1.22
51370964--51371153	28	6.7	27	70	16	97	62	1	3	32	1.22
51370965--51371054	10	9.5	10	78	10	75	63	1	0	35	1.02
51370976--51371092	39	3.1	37	79	9	119	62	0	1	35	1.06
51370976--51371084	19	5.8	18	72	19	80	63	0	1	34	1.05
51371402--51371475	28	2.6	29	80	8	80	32	1	1	64	1.10
51377025--51378189	146	8.0	146	84	2	1401	28	20	14	37	1.91
51377025--51378189	582	2.0	581	85	2	1575	28	20	14	37	1.91
51378953--51378989	20	1.9	19	89	10	58	43	0	32	24	1.55
51379371--51379401	9	3.4	9	90	0	53	38	22	12	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51387657--51387817	78	2.1	78	100	0	322	34	13	7	44	1.71
51388545--51388601	20	2.9	19	85	10	80	66	3	0	29	1.08
51409157--51409532	44	8.7	44	72	10	222	23	24	22	30	1.99
51409705--51410130	132	3.2	132	92	0	690	24	21	22	32	1.98
51413177--51414462	642	2.0	642	100	0	2572	24	24	19	31	1.98
51426164--51426224	3	20.3	3	93	0	104	31	1	1	65	1.12
51432841--51433311	44	10.7	43	65	8	196	26	26	24	22	2.00
51432835--51433311	88	5.4	88	86	1	695	26	26	24	22	2.00
51433308--51433690	130	3.0	129	91	2	592	30	19	24	25	1.98
51437718--51437822	31	3.4	30	73	10	88	53	5	1	39	1.36
51441067--51441126	26	2.3	26	94	0	102	56	11	15	16	1.67
51444862--51444886	13	1.9	13	100	0	50	48	12	0	40	1.40
51449201--51449233	5	6.8	5	86	6	50	54	0	0	45	0.99
51449975--51450042	19	3.3	20	73	21	52	52	1	2	42	1.25
51451385--51451429	19	2.4	19	85	10	65	24	2	2	71	1.09
51463372--51463409	3	12.7	3	94	0	67	65	0	2	31	1.06
51464951--51465318	44	8.5	44	70	7	195	26	21	20	30	1.98
51464939--51465318	87	4.4	88	79	7	404	26	22	20	30	1.98
51471415--51471499	41	2.1	41	100	0	170	16	10	23	49	1.77
51473487--51473525	20	2.0	20	90	5	62	38	2	2	56	1.27
51473962--51474024	26	2.4	27	97	2	119	41	11	0	47	1.39
51474344--51474381	20	1.9	20	89	10	60	47	7	5	39	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51474639--51474695	19	3.1	19	79	5	80	36	12	0	50	1.40
51474732--51474789	19	3.1	19	80	5	82	48	0	12	39	1.40
51474669--51474923	134	1.9	136	95	1	469	43	5	6	44	1.52
51474866--51474998	37	3.6	37	96	0	248	48	0	12	38	1.47
51474697--51474966	134	2.0	133	83	6	339	46	3	8	41	1.51
51474866--51474990	18	6.8	18	76	8	126	48	0	12	37	1.47
51474866--51474998	19	7.2	19	76	5	146	48	0	12	38	1.47
51475509--51475567	27	2.2	27	84	0	73	13	28	27	30	1.94
51475606--51475667	26	2.3	27	91	2	108	50	0	9	40	1.35
51477168--51477213	3	15.3	3	100	0	92	67	0	0	32	0.91
51484723--51484764	5	8.4	5	100	0	84	40	19	19	21	1.92
51485927--51485957	9	3.4	9	90	0	53	38	22	12	25	1.90
51487076--51487170	30	3.2	30	69	16	97	33	5	7	53	1.51
51487073--51487192	60	2.0	60	96	0	222	35	5	8	50	1.54
51487233--51487273	16	2.6	16	78	21	50	63	0	2	34	1.08
51491924--51491964	6	6.5	6	83	10	55	36	2	34	26	1.70
51491924--51491961	13	2.9	13	92	0	67	36	2	31	28	1.71
51491924--51491964	19	2.2	19	86	8	57	36	2	34	26	1.70
51496761--51496829	31	2.2	31	87	5	95	36	15	10	37	1.82
51508202--51508335	65	2.1	65	92	0	223	40	23	20	14	1.90
51521159--51521410	124	2.0	124	96	0	468	33	13	17	35	1.88
51534967--51535083	17	6.9	17	74	7	94	29	31	16	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51534972--51535069	51	1.9	51	83	4	126	29	31	14	24	1.94
51534967--51535050	34	2.5	34	88	0	132	32	30	14	22	1.94
51548242--51548276	9	3.9	9	84	0	52	40	11	28	20	1.87
51559909--51559957	21	2.3	21	86	10	64	73	4	2	20	1.10
51567600--51567630	13	2.4	13	94	0	53	32	29	3	35	1.73
51581169--51581218	3	16.7	3	100	0	100	66	0	0	34	0.92
51585067--51585161	48	2.0	48	95	0	172	27	14	27	30	1.95
51586461--51586550	44	2.0	44	93	4	155	32	8	27	31	1.87
51587927--51587974	23	2.1	23	84	3	62	37	16	16	29	1.91
51590183--51590221	19	2.1	19	85	0	51	69	2	7	20	1.26
51597572--51597832	129	2.0	129	89	0	396	33	12	20	33	1.90
51602815--51602863	18	2.6	20	75	9	50	57	10	2	30	1.43
51603902--51603934	16	2.0	17	88	5	50	12	15	3	69	1.30
51604067--51604135	31	2.2	31	100	0	138	15	27	10	46	1.78
51604964--51605002	20	2.0	20	85	10	53	66	0	12	20	1.24
51605888--51605918	15	2.1	15	100	0	62	25	12	6	54	1.62
51606303--51606344	21	2.0	21	85	0	57	26	28	23	21	1.99
51606943--51607114	30	5.7	30	89	0	245	16	29	30	23	1.96
51607003--51607111	15	7.1	17	68	23	89	16	29	30	23	1.96
51606996--51607101	13	7.2	13	67	22	59	13	29	33	24	1.93
51607962--51608025	21	3.0	21	88	0	101	50	18	20	10	1.77
51624198--51624245	10	5.1	10	78	16	50	10	10	0	79	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51624774--51624835	18	3.2	18	79	9	52	59	4	27	8	1.46
51628366--51628398	16	2.1	16	94	0	57	81	3	0	15	0.80
51628402--51628537	29	4.6	29	84	2	173	31	22	3	42	1.71
51628402--51628537	59	2.3	59	88	0	209	31	22	3	42	1.71
51628402--51628537	30	4.6	29	83	2	164	31	22	3	42	1.71
51628891--51628921	3	10.0	3	93	6	53	67	0	32	0	0.91
51629206--51629242	7	5.0	7	90	9	56	83	0	16	0	0.64
51629202--51629241	15	2.6	15	96	4	71	85	0	15	0	0.61
51629190--51629252	8	7.2	9	77	16	62	79	0	20	0	0.73
51629791--51629865	38	2.0	38	81	5	89	34	12	13	40	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203