genome.fa.s26.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  100  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30691039--30692329	100	12.9	100	87	1	1453	31	24	21	23	1.98
30692097--30692252	50	3.1	50	67	15	142	29	25	21	23	1.99
30692124--30692279	50	3.1	50	66	15	133	28	23	25	22	1.99
30699707--30699857	30	5.1	30	76	0	151	33	11	25	29	1.91
30699708--30699857	60	2.5	60	85	1	212	33	11	26	29	1.91
30705595--30705633	21	1.9	21	84	5	53	5	20	0	74	1.01
30713803--30714071	40	6.8	40	96	2	499	25	20	29	24	1.99
30721310--30721481	80	2.2	79	91	1	272	25	20	28	26	1.99
30721310--30721461	40	3.8	40	96	0	277	25	21	28	24	1.99
30725561--30725644	43	2.0	42	85	2	114	26	21	2	50	1.61
30731533--30731682	55	2.8	54	80	4	149	26	15	29	28	1.96
30731505--30731682	27	6.6	27	77	6	146	25	15	28	30	1.96
30731506--30731661	82	1.9	81	81	6	190	25	16	28	30	1.96
30739538--30739687	55	2.8	54	80	4	149	26	15	29	28	1.96
30739510--30739687	27	6.6	27	77	6	146	25	15	28	30	1.96
30739511--30739666	82	1.9	81	81	6	190	25	16	28	30	1.96
30744996--30745143	41	3.6	41	84	0	170	31	24	23	20	1.98
30745085--30745116	16	2.0	16	93	0	55	28	25	28	18	1.98
30745291--30745333	14	2.9	15	83	16	63	55	11	2	30	1.48
30749898--30750054	9	17.9	9	78	11	157	36	0	15	46	1.51
30749896--30750054	17	9.1	17	76	13	146	37	0	15	46	1.51
30749896--30750054	26	6.1	26	76	13	166	37	0	15	46	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30751926--30751973	24	2.0	24	95	0	87	64	10	4	20	1.41
30752102--30752177	24	3.2	24	75	15	86	38	2	40	18	1.65
30752606--30752668	22	2.9	22	85	4	65	39	34	6	19	1.77
30752599--30752738	7	19.7	7	72	8	77	42	35	3	18	1.68
30752628--30752709	29	2.9	29	73	12	71	41	35	3	19	1.69
30752619--30752677	22	2.7	22	86	5	75	33	40	6	18	1.77
30753580--30753671	40	2.3	40	83	3	114	27	21	21	29	1.99
30755730--30755910	40	4.6	40	76	5	170	30	23	15	30	1.95
30755730--30755933	40	5.1	39	75	11	146	30	23	16	29	1.96
30774853--30774929	31	2.4	31	89	4	109	51	15	3	28	1.61
30777199--30777251	26	2.0	26	85	7	72	30	0	1	67	1.01
30780177--30780222	9	5.0	9	84	5	65	32	0	0	67	0.91
30780167--30780226	28	2.1	28	78	6	77	40	0	0	60	0.97
30780192--30780231	18	2.2	18	86	0	53	40	0	0	60	0.97
30781946--30782154	40	5.3	40	89	4	239	26	21	27	25	1.99
30781946--30782189	79	3.1	80	83	5	230	27	20	27	24	1.99
30781894--30782189	119	2.5	119	79	6	280	27	21	27	24	1.99
30789899--30790045	40	3.7	40	92	0	224	24	20	27	27	1.99
30789899--30790080	79	2.3	80	83	1	224	25	20	28	25	1.99
30797782--30797951	40	4.3	40	89	0	207	24	20	28	27	1.99
30797729--30797953	80	2.8	79	82	3	245	24	20	28	27	1.99
30797804--30797986	79	2.3	80	80	1	217	25	20	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30801704--30801762	22	2.7	22	80	15	77	47	16	3	32	1.64
30803058--30803099	22	1.9	22	85	0	57	47	23	0	28	1.52
30807273--30807303	16	1.9	16	100	0	62	25	12	22	38	1.90
30811433--30811658	40	5.7	40	86	4	253	26	26	20	25	1.99
30811433--30811651	120	1.8	120	83	5	291	27	26	20	26	1.99
30819536--30819761	40	5.7	40	90	4	280	26	26	21	25	2.00
30823814--30823873	30	2.0	30	87	6	86	48	10	8	33	1.67
30853889--30854009	40	3.0	40	90	1	181	28	28	19	23	1.98
30867543--30867788	50	4.8	50	79	5	210	29	21	26	22	1.99
30891192--30891377	51	3.7	49	77	9	160	25	17	25	31	1.97
30891193--30891377	101	1.8	101	87	3	273	25	17	25	31	1.97
30894387--30894426	11	3.7	11	96	3	73	17	17	7	57	1.62
30894387--30894436	22	2.2	22	86	10	66	18	20	6	56	1.62
30906636--30906710	26	2.9	26	84	2	107	41	9	16	33	1.80
30908135--30908179	22	2.0	22	100	0	90	53	13	4	28	1.59
30911262--30911328	25	2.7	25	83	2	82	28	25	20	25	1.99
30916703--30916757	6	9.2	6	100	0	110	32	0	0	67	0.91
30918930--30918989	30	2.0	30	84	12	79	26	23	31	18	1.97
30919365--30919406	18	2.3	18	80	8	50	35	0	4	59	1.19
30924937--30924990	20	2.6	20	85	5	63	62	0	1	35	1.06
30925447--30925505	19	2.9	19	85	7	73	30	1	3	64	1.20
30926504--30926534	6	5.2	6	96	0	53	0	77	0	22	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30926950--30926974	5	5.0	5	100	0	50	20	0	0	80	0.72
30927083--30927112	6	5.0	6	100	0	60	50	0	0	50	1.00
30927364--30927445	19	4.0	19	75	17	74	2	26	21	48	1.63
30927382--30927435	25	2.2	25	89	0	81	3	25	24	46	1.69
30930335--30930382	18	2.7	18	93	0	78	33	12	12	41	1.80
30932572--30932622	20	2.5	20	75	12	52	27	0	11	60	1.31
30933593--30933620	9	3.1	9	100	0	56	57	10	0	32	1.33
30933563--30933704	68	2.1	66	94	2	248	45	9	4	40	1.58
30933693--30933734	16	2.6	16	88	0	57	45	4	2	47	1.36
30933563--30933726	68	2.5	67	88	8	218	46	8	4	40	1.54
30933708--30933769	23	2.7	22	85	7	79	48	0	1	50	1.10
30938234--30938442	92	2.3	91	85	7	271	45	3	3	46	1.39
30938370--30938417	26	1.9	25	84	16	64	45	0	2	52	1.12
30938459--30938492	17	2.0	17	88	11	52	44	2	0	52	1.16
30938458--30938754	120	2.5	120	91	4	485	42	2	5	49	1.39
30938711--30938752	15	2.7	16	82	14	52	45	0	2	52	1.13
30938702--30938743	15	2.9	15	82	10	52	47	0	0	52	1.00
30938873--30938921	26	1.9	25	84	12	64	46	0	4	48	1.20
30938686--30938995	150	2.0	154	92	4	520	46	5	3	44	1.42
30944759--30944838	41	2.0	41	92	0	133	26	18	22	32	1.97
30944970--30945011	21	2.0	21	86	9	59	45	2	11	40	1.54
30949887--30949938	16	3.2	16	81	5	52	71	5	0	23	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30956587--30956625	18	2.2	18	86	9	53	61	5	2	30	1.31
30957832--30957954	50	2.4	52	82	2	151	33	13	13	40	1.82
30960665--30960722	30	1.9	30	85	0	80	41	5	6	46	1.53
30963661--30963784	63	2.0	63	82	1	151	49	7	11	32	1.66
30965406--30965492	40	2.2	40	85	4	122	59	5	4	29	1.41
30969462--30969502	18	2.4	17	84	8	55	36	9	4	48	1.58
30970362--30970429	28	2.4	28	80	2	64	35	10	16	38	1.82
30980391--30980456	33	1.9	35	85	11	93	56	7	3	33	1.43
30980916--30980963	25	1.9	25	91	0	78	58	2	8	31	1.39
30980915--30980991	25	3.5	21	73	16	75	55	1	7	35	1.37
30982672--30982777	44	2.4	43	84	7	133	30	21	21	26	1.99
30982795--30983247	51	8.9	51	91	0	656	28	25	16	29	1.97
30982795--30983248	203	2.2	204	87	0	685	28	25	16	29	1.97
30982795--30983247	152	3.0	152	88	0	645	28	25	16	29	1.97
30984430--30984550	48	2.5	46	77	6	125	14	23	20	42	1.88
30990493--30990521	12	2.3	13	94	5	51	62	0	24	13	1.32
30990662--30990738	26	3.0	25	84	5	100	41	10	15	32	1.81
30991783--30992704	461	2.0	461	98	0	1781	38	16	10	34	1.82
30993527--30993626	5	20.0	5	100	0	200	60	0	0	40	0.97
30993966--30994030	5	13.0	5	100	0	130	60	0	0	40	0.97
30993562--30994435	404	2.2	405	99	0	1714	31	13	11	42	1.80
30994371--30994473	5	20.6	5	100	0	206	59	0	0	40	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31000531--31000642	41	2.8	40	74	9	113	33	22	16	27	1.95
31001376--31001458	5	16.8	5	92	7	143	59	0	0	40	0.98
31008633--31008726	49	1.9	48	85	6	127	43	10	19	26	1.83
31009111--31009163	17	3.1	17	73	10	54	20	1	3	73	1.08
31009299--31009347	17	2.8	17	87	6	62	53	2	0	44	1.12
31009530--31009570	19	2.3	18	83	8	57	46	7	2	43	1.44
31011970--31012047	25	3.2	25	77	18	85	38	23	2	35	1.68
31013371--31013427	20	2.8	20	89	0	78	22	29	0	47	1.52
31014133--31014273	35	4.0	35	85	0	183	39	27	13	19	1.89
31023443--31023500	20	2.9	20	84	5	73	32	18	29	18	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221