genome.fa.s26.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  144  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44133946--44134203	119	2.2	120	81	6	294	25	26	21	26	2.00
44141989--44142213	40	5.7	40	85	5	260	24	27	22	25	2.00
44141989--44142206	119	1.8	120	82	6	282	25	26	21	26	1.99
44152323--44152385	30	2.1	30	88	5	92	49	9	7	33	1.64
44157165--44157224	28	2.1	28	81	0	66	28	21	26	23	1.99
44157570--44157970	27	15.4	26	76	11	294	17	17	19	45	1.86
44157568--44157984	81	5.3	82	77	11	385	17	17	20	44	1.86
44157791--44157995	27	7.6	27	87	1	232	18	18	19	43	1.88
44171002--44171038	18	2.0	19	89	5	58	51	0	43	5	1.24
44174853--44174914	30	2.1	30	90	6	99	50	12	6	30	1.66
44175336--44175391	28	2.0	28	96	0	103	35	17	16	30	1.92
44179136--44179599	50	9.3	49	72	4	284	33	23	20	22	1.97
44179057--44179595	100	5.4	96	82	5	531	33	21	20	24	1.97
44179123--44179604	200	2.4	200	90	0	732	33	22	20	22	1.97
44179123--44179604	100	4.8	100	87	2	628	33	22	20	22	1.97
44184554--44185094	44	11.6	44	68	18	267	32	18	20	28	1.96
44184586--44185095	142	3.6	142	91	1	835	33	18	20	28	1.96
44184867--44184955	43	2.0	44	82	2	108	34	19	19	26	1.95
44185182--44185774	50	11.9	50	70	3	323	33	23	20	23	1.97
44185114--44185719	100	6.1	100	85	2	761	32	22	20	24	1.98
44187249--44187283	15	2.3	15	95	0	61	37	5	5	51	1.50
44187550--44187591	14	3.2	13	87	12	68	35	0	2	61	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44194599--44194721	44	2.8	44	86	2	167	29	20	23	26	1.99
44194599--44194741	44	3.3	43	77	5	135	32	19	20	27	1.97
44194939--44195538	50	12.0	51	72	6	431	33	23	19	23	1.97
44194876--44195499	100	6.2	100	88	0	818	32	23	19	23	1.98
44197014--44197048	15	2.3	15	95	0	61	37	5	5	51	1.50
44197035--44197069	18	1.9	18	88	11	54	37	0	5	57	1.23
44197311--44197349	14	2.9	14	88	7	55	33	2	2	61	1.23
44197310--44197351	12	3.2	13	83	12	59	33	2	2	61	1.21
44203982--44204057	30	2.5	30	80	0	98	27	25	9	38	1.86
44204037--44204352	30	10.5	30	69	12	132	23	24	14	37	1.92
44204032--44204383	90	3.9	90	83	6	376	23	25	14	37	1.92
44206723--44206768	20	2.2	20	84	3	56	36	0	4	58	1.18
44223902--44223935	13	2.6	14	86	13	54	47	11	17	23	1.81
44238294--44238414	20	6.1	20	82	0	143	8	24	25	41	1.83
44238295--44238409	60	1.9	60	87	0	167	8	25	26	40	1.84
44240094--44240480	193	2.0	193	99	0	765	26	21	15	36	1.93
44245749--44245842	32	3.0	31	81	4	98	40	18	18	23	1.91
44246012--44246130	24	5.0	24	81	6	134	46	20	5	27	1.73
44248316--44248348	17	1.9	17	93	0	57	42	6	12	39	1.67
44249359--44249392	9	3.8	9	84	0	50	50	2	0	47	1.16
44249383--44249415	17	1.9	17	93	0	57	42	15	0	42	1.46
44250413--44250450	13	2.8	14	80	19	53	65	5	5	23	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44250413--44250463	27	1.9	26	84	11	68	70	5	3	19	1.24
44250535--44250567	7	4.4	8	88	11	52	78	9	0	12	0.95
44250535--44250567	15	2.2	15	94	0	57	78	9	0	12	0.95
44250837--44250919	30	2.7	31	78	14	91	57	6	2	33	1.36
44251054--44251097	17	2.6	17	85	3	63	47	0	11	40	1.39
44251541--44251598	22	2.6	22	81	7	64	41	17	5	36	1.72
44256075--44256124	23	2.2	23	82	13	59	36	0	0	64	0.94
44256069--44256122	16	3.1	17	78	13	56	38	0	0	61	0.96
44257873--44257928	29	2.0	28	85	3	76	33	7	23	35	1.82
44264282--44264312	12	2.5	13	89	10	55	32	12	0	54	1.38
44264931--44264957	8	3.4	8	100	0	54	55	0	0	44	0.99
44276979--44277014	18	2.0	18	94	0	63	22	25	22	30	1.99
44277271--44277309	18	2.2	18	100	0	78	20	30	20	28	1.98
44286655--44286697	22	2.0	22	81	9	52	18	11	9	60	1.57
44288766--44288930	66	2.5	66	83	2	197	26	26	25	22	2.00
44291631--44291701	17	4.4	17	71	18	62	28	23	26	21	1.99
44291621--44291679	30	2.0	30	89	0	91	28	28	25	16	1.97
44292024--44292058	5	6.8	5	93	6	61	20	0	0	80	0.72
44292014--44292055	10	3.7	11	87	12	59	19	0	2	78	0.86
44293314--44293340	9	3.0	9	100	0	54	11	11	33	44	1.75
44295139--44295171	16	2.1	16	88	11	50	57	0	3	39	1.14
44296320--44296397	42	1.9	42	82	7	99	64	6	2	26	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44296908--44296969	18	3.1	20	77	13	74	32	3	4	59	1.34
44296900--44296956	18	3.0	19	80	7	71	31	0	5	63	1.17
44310347--44310390	18	2.5	17	82	17	54	34	0	20	45	1.51
44310616--44310691	23	3.3	23	83	3	100	21	19	27	31	1.97
44314889--44315026	71	1.9	71	92	0	231	36	17	16	29	1.92
44315427--44315475	19	2.5	20	80	10	55	57	0	6	36	1.24
44315452--44315512	32	1.9	31	86	3	86	55	1	6	36	1.36
44315578--44315670	3	30.0	3	71	8	53	60	3	8	27	1.42
44315616--44315684	21	3.3	21	83	0	75	59	2	5	31	1.36
44317656--44317806	51	3.0	51	80	0	185	31	27	12	28	1.93
44317833--44318194	138	2.6	138	85	3	444	28	22	19	30	1.98
44318069--44318355	51	5.5	51	76	7	193	27	22	17	32	1.96
44318045--44318374	159	2.1	159	88	1	491	26	22	17	33	1.96
44318292--44318427	72	1.9	72	85	0	191	28	24	11	35	1.91
44319836--44319887	6	8.8	6	79	12	54	1	19	0	78	0.84
44319836--44319899	11	5.9	11	75	17	55	1	17	0	81	0.77
44319833--44319889	17	3.4	16	79	11	69	1	17	0	80	0.79
44319834--44319897	8	7.9	8	73	16	60	1	17	0	81	0.77
44324381--44324525	73	2.0	73	93	1	247	35	15	19	28	1.93
44324975--44325015	21	1.9	22	85	5	57	48	4	9	36	1.58
44326919--44326953	17	2.1	17	89	5	54	40	0	8	51	1.33
44334304--44334460	37	4.2	37	95	0	278	29	31	17	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44334658--44334948	47	6.1	47	88	4	402	26	29	12	31	1.92
44334699--44334775	22	3.4	22	64	22	59	23	28	12	35	1.92
44334658--44334948	147	2.0	141	89	4	438	26	29	12	31	1.92
44336885--44337063	85	2.1	85	98	0	349	26	27	8	37	1.85
44338829--44339180	40	8.8	40	91	0	542	25	29	21	22	1.99
44340434--44340554	37	3.3	37	94	0	197	30	29	17	22	1.96
44340687--44340777	46	2.0	46	86	0	128	24	31	10	32	1.90
44340751--44341041	47	6.1	47	87	4	402	26	28	12	32	1.92
44340751--44341041	147	2.0	144	88	4	435	26	28	12	32	1.92
44342983--44343161	85	2.1	85	98	0	349	26	27	8	37	1.85
44345447--44345476	10	3.0	10	95	0	51	86	0	13	0	0.57
44345448--44345477	15	2.1	14	93	6	51	90	0	10	0	0.47
44352206--44352257	26	2.0	26	100	0	104	34	23	15	26	1.94
44364460--44364496	18	2.1	18	89	0	56	32	29	0	37	1.58
44366249--44366322	3	24.7	3	100	0	148	32	0	0	67	0.91
44367828--44367860	16	2.1	16	88	11	50	48	9	9	33	1.66
44378804--44379149	171	2.0	171	98	0	674	29	13	13	43	1.83
44380781--44381104	86	3.8	86	78	8	288	41	13	12	32	1.82
44384677--44384767	47	2.0	47	85	10	127	37	18	23	20	1.94
44384669--44384777	22	4.6	24	80	13	111	39	17	23	19	1.92
44389709--44389743	17	2.1	17	89	5	54	57	8	17	17	1.64
44390789--44390946	41	3.9	41	78	6	167	20	18	26	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44390789--44390943	82	1.9	82	82	5	197	20	18	26	34	1.96
44392488--44392525	18	2.2	17	86	9	51	21	7	2	68	1.28
44393754--44393947	99	2.0	95	90	6	300	22	13	12	52	1.73
44393773--44393947	95	1.8	97	88	5	230	22	13	13	50	1.76
44394875--44394923	20	2.5	19	87	12	73	59	2	4	34	1.28
44395490--44395582	40	2.3	38	85	7	114	41	1	2	54	1.19
44399534--44399582	24	2.0	26	84	8	66	2	16	6	75	1.09
44413345--44413377	9	3.8	9	96	4	59	12	0	9	78	0.95
44413412--44413453	18	2.3	19	83	4	50	19	9	4	66	1.38
44413420--44413458	19	2.1	19	85	9	53	17	7	7	66	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221