genome.fa.s26.2.7.7.80.10.50.1000.206.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  206  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60557579--60557639	17	3.6	17	77	18	65	31	0	1	67	1.01
60562629--60562701	34	2.1	34	100	0	146	30	5	19	45	1.73
60580526--60580621	31	3.1	31	93	3	165	32	9	11	46	1.72
60581170--60581257	22	4.4	21	71	17	80	75	9	13	2	1.14
60581212--60581244	16	2.1	16	88	11	50	87	6	6	0	0.65
60586795--60586890	31	3.1	31	92	3	165	32	10	12	44	1.76
60606817--60606867	27	1.9	26	88	4	75	54	3	0	41	1.19
60606839--60606886	22	2.0	24	88	11	73	54	4	2	39	1.32
60607628--60607670	22	2.0	21	95	4	77	53	0	0	46	1.00
60612361--60612406	24	1.9	24	86	8	67	67	6	10	15	1.40
60619139--60619205	11	5.9	11	78	15	66	26	26	1	44	1.63
60620664--60620712	26	1.9	26	88	12	75	42	30	6	20	1.76
60622037--60622329	50	5.8	50	90	0	451	20	30	22	25	1.98
60622424--60622453	13	2.3	13	94	0	51	50	13	3	33	1.58
60622667--60622724	30	1.9	30	89	0	89	29	24	5	41	1.76
60624659--60624696	18	2.1	18	95	0	67	21	5	2	71	1.19
60629336--60629379	21	2.0	22	86	4	63	47	6	0	45	1.29
60632780--60632813	7	4.9	7	85	0	50	41	0	2	55	1.15
60632771--60632804	14	2.4	14	95	0	59	35	0	5	58	1.22
60637225--60637255	16	1.9	16	93	0	53	32	6	6	54	1.51
60639366--60639398	16	2.0	17	88	5	50	51	9	21	18	1.73
60646614--60646674	13	4.4	15	72	14	51	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60647119--60647168	23	2.2	23	89	7	75	68	0	0	32	0.90
60647118--60647168	18	2.9	18	85	2	68	66	0	0	33	0.92
60647119--60647168	6	8.7	6	81	16	61	68	0	0	32	0.90
60648190--60648223	17	1.9	18	88	5	52	70	0	0	29	0.87
60652920--60652962	20	2.2	20	84	12	54	62	2	0	34	1.08
60657015--60657053	14	2.8	13	88	7	51	53	0	0	46	1.00
60657016--60657053	18	2.1	18	90	0	58	52	0	0	47	1.00
60658321--60658359	18	2.2	17	86	13	53	33	0	20	46	1.51
60658585--60658682	23	4.3	23	90	2	162	20	21	26	31	1.98
60658587--60658675	45	2.0	45	95	0	160	19	22	26	31	1.97
60665686--60665724	18	2.2	17	86	13	53	33	0	20	46	1.51
60665950--60666047	23	4.3	23	90	2	162	20	21	26	31	1.98
60665952--60666040	45	2.0	45	95	0	160	19	22	26	31	1.97
60679329--60679715	166	2.4	162	92	3	641	30	14	9	45	1.76
60685268--60685324	30	1.9	30	89	7	89	12	7	1	78	1.01
60685269--60685324	9	6.0	9	78	17	53	12	7	1	78	1.02
60685276--60685322	21	2.2	20	85	10	67	12	6	0	80	0.88
60686370--60686405	17	2.1	17	94	0	63	27	2	5	63	1.30
60688812--60688848	16	2.2	17	86	13	51	59	0	5	35	1.20
60688828--60688878	18	2.9	18	77	5	52	52	0	1	45	1.12
60691778--60691863	9	9.7	9	74	9	61	68	0	3	27	1.06
60691771--60691855	26	3.3	26	74	11	84	68	0	3	28	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60691820--60691863	19	2.3	20	84	11	65	79	0	0	20	0.73
60697878--60697924	24	2.0	24	83	8	60	53	0	0	46	1.00
60698370--60698432	28	2.2	28	88	5	92	57	0	3	39	1.15
60708249--60708292	22	2.0	22	86	8	63	56	2	9	31	1.43
60710209--60710646	84	5.2	82	81	11	444	22	20	23	33	1.97
60710234--60710643	127	3.3	124	87	6	558	22	21	22	33	1.97
60710209--60710641	211	2.1	211	94	1	762	22	20	23	33	1.97
60710361--60710713	127	2.8	126	81	8	287	23	21	21	33	1.97
60710752--60710914	44	3.7	44	65	11	118	23	25	26	25	2.00
60710875--60711012	45	3.2	43	68	15	122	23	24	23	28	1.99
60710907--60711042	41	3.2	43	66	16	111	28	27	22	22	1.99
60710791--60711089	86	3.5	86	88	2	386	25	25	24	25	2.00
60711733--60711833	45	2.3	43	78	10	103	52	7	12	26	1.67
60712104--60712148	19	2.3	20	88	3	65	0	11	4	84	0.76
60712104--60712136	10	3.4	10	87	4	50	0	9	3	87	0.63
60712104--60712146	9	4.6	9	82	8	50	0	9	4	86	0.71
60712104--60712147	13	3.4	13	83	0	52	0	9	4	86	0.70
60712566--60712600	15	2.4	14	86	9	52	8	8	0	82	0.83
60712569--60712662	47	2.0	48	85	10	131	6	10	5	77	1.11
60712624--60712672	17	3.1	15	85	8	62	2	10	6	81	0.94
60712625--60712682	25	2.3	25	85	8	73	1	12	6	79	1.00
60712626--60712681	8	6.8	8	80	13	60	1	12	7	78	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60712580--60712685	56	1.9	54	83	11	135	4	10	7	77	1.11
60713965--60714148	62	3.0	62	95	0	323	33	4	19	41	1.73
60717208--60717244	7	5.6	7	87	6	51	75	13	10	0	1.04
60718096--60718162	27	2.5	27	87	0	98	25	28	23	22	1.99
60718112--60718169	27	2.1	27	83	0	71	29	32	18	18	1.96
60718671--60718737	34	2.1	33	83	8	84	34	8	2	53	1.47
60720300--60720375	23	3.5	22	76	16	70	18	7	23	50	1.73
60721573--60721678	25	4.2	25	79	12	119	50	4	6	37	1.49
60721566--60721635	23	3.0	23	79	12	88	51	7	8	32	1.60
60724117--60724324	91	2.3	91	87	2	283	44	4	3	46	1.42
60724341--60724377	16	2.2	17	86	13	51	40	2	2	54	1.29
60724464--60724505	15	2.9	15	82	10	52	47	0	0	52	1.00
60724449--60724687	79	3.1	74	62	18	171	46	3	3	46	1.39
60724448--60724757	157	2.0	157	96	0	575	47	5	3	44	1.41
60724617--60724651	18	2.0	17	88	5	52	45	0	0	54	0.99
60724885--60724917	16	2.1	16	94	0	57	30	36	0	33	1.58
60729004--60729096	18	5.2	18	89	0	141	30	23	13	32	1.94
60737243--60737295	22	2.4	22	80	0	61	18	16	3	60	1.51
60746341--60746404	28	2.3	27	81	7	76	65	1	4	28	1.21
60746381--60746435	25	2.2	25	83	6	67	69	0	3	27	1.05
60746360--60746441	33	2.5	34	80	9	89	68	1	3	26	1.14
60758490--60758543	21	2.4	22	79	14	58	37	0	3	59	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60758509--60758576	34	2.0	34	94	0	118	38	1	1	58	1.16
60758539--60758600	20	3.0	21	81	13	74	43	1	0	54	1.09
60758541--60758594	21	2.6	21	88	5	74	40	1	0	57	1.09
60758649--60758709	30	2.0	32	84	12	83	39	1	4	54	1.32
60758743--60758794	11	4.8	11	76	11	54	63	1	0	34	1.06
60758771--60758824	20	2.6	21	80	14	58	59	3	0	37	1.15
60758881--60758931	21	2.4	21	87	12	70	62	0	0	37	0.95
60758896--60758964	34	2.0	35	91	2	113	62	1	0	36	1.04
60758935--60758981	23	1.9	24	83	12	60	59	2	2	36	1.21
60774687--60774723	12	3.0	13	84	11	51	29	40	18	10	1.85
60777159--60777201	4	10.8	4	94	0	77	25	51	0	23	1.49
60777205--60777244	2	20.0	2	100	0	80	0	0	50	50	1.00
60778618--60778878	128	2.0	127	97	0	486	35	12	10	42	1.77
60789597--60789621	13	1.9	13	100	0	50	12	0	8	80	0.92
60792834--60792889	29	1.9	29	100	0	112	32	30	10	26	1.90
60795607--60795855	50	4.8	50	83	5	284	20	29	23	26	1.99
60795606--60795855	100	2.4	104	86	5	337	20	29	23	26	1.99
60800086--60800128	16	2.7	16	85	7	52	86	6	2	4	0.79
60800956--60801006	25	2.0	26	85	11	70	72	0	15	11	1.12
60802191--60802930	88	8.4	88	91	0	1088	27	23	24	24	2.00
60802972--60803233	132	2.0	132	84	3	339	27	17	24	30	1.97
60809595--60809655	30	2.0	30	96	0	113	29	29	13	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60813129--60813211	39	2.2	38	93	2	139	48	8	18	25	1.76
60818870--60818900	14	2.3	14	94	5	55	38	0	0	61	0.96
60819345--60819463	60	2.0	60	91	3	195	46	9	7	36	1.64
60822962--60823002	21	2.0	20	85	4	55	46	2	2	48	1.28
60828402--60828431	16	1.9	16	93	6	53	6	30	0	63	1.20
60830970--60831003	6	5.7	6	100	0	68	0	50	32	17	1.47
60838753--60838809	16	3.6	16	95	0	87	29	0	36	33	1.58
60839055--60839089	18	2.0	17	88	5	52	54	0	0	45	0.99
60844716--60844794	22	3.6	22	68	13	63	18	10	7	63	1.49
60853980--60854087	53	2.0	53	96	0	198	34	19	12	33	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221