genome.fa.s26.2.7.7.80.10.50.1000.217.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  217  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63502908--63503307	109	3.7	109	90	2	608	33	18	17	30	1.94
63502908--63503309	219	1.8	216	92	1	678	33	18	16	30	1.94
63503946--63503982	14	2.8	13	88	8	56	72	2	0	24	0.97
63504019--63504062	15	2.9	16	87	12	58	61	2	4	31	1.28
63504664--63504713	22	2.3	21	83	10	64	80	4	12	4	1.00
63504926--63504972	20	2.3	20	88	3	67	8	19	51	21	1.73
63509024--63509195	85	2.0	85	98	0	335	33	9	11	45	1.73
63513377--63513408	6	5.5	6	92	7	57	0	12	0	87	0.54
63513374--63513408	11	3.1	11	88	8	52	0	14	0	85	0.59
63513374--63513408	17	2.1	17	94	0	61	0	14	0	85	0.59
63513931--63513994	6	10.5	6	91	1	101	37	0	60	1	1.06
63514035--63514064	11	2.7	11	89	0	51	0	16	0	83	0.65
63516819--63516847	14	2.1	14	93	6	51	37	0	0	62	0.96
63520383--63520440	24	2.4	24	85	5	82	36	15	13	34	1.87
63520546--63520613	20	3.4	20	80	8	84	36	16	14	32	1.89
63520927--63520972	4	11.5	4	100	0	92	50	23	0	26	1.50
63526329--63526371	20	2.1	21	86	4	61	48	23	9	18	1.76
63526504--63526537	13	2.6	13	100	0	68	14	0	44	41	1.45
63528696--63530541	611	3.0	613	89	5	2678	27	13	19	39	1.90
63530124--63530148	12	2.1	12	100	0	50	40	0	60	0	0.97
63536702--63536767	27	2.5	26	88	9	91	24	15	19	40	1.90
63541818--63541872	26	2.1	27	80	16	71	30	0	16	52	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63542776--63542867	26	3.7	25	81	16	104	22	26	20	30	1.98
63543027--63543065	20	2.0	20	84	0	51	33	7	17	41	1.79
63543383--63543502	48	2.5	48	98	0	231	34	29	10	25	1.90
63546889--63546913	13	1.9	13	100	0	50	8	8	20	64	1.46
63562253--63562325	23	3.2	23	92	0	128	30	24	21	23	1.99
63562412--63562440	8	3.6	8	100	0	58	34	27	13	24	1.93
63575259--63575295	5	7.4	5	100	0	74	59	0	0	40	0.97
63576222--63576311	22	4.1	20	78	13	81	41	23	24	11	1.87
63576214--63576308	44	2.2	44	86	7	131	42	22	24	11	1.86
63578417--63578514	42	2.3	42	82	6	119	27	25	28	18	1.98
63579121--63579152	12	2.6	13	85	14	50	37	0	6	56	1.25
63583443--63583481	19	2.1	19	85	9	53	38	15	15	30	1.88
63587514--63587667	47	3.3	47	84	6	204	27	15	25	31	1.96
63587515--63587689	94	1.9	94	85	4	246	26	16	25	31	1.96
63587515--63587717	47	4.3	46	82	8	176	25	14	27	33	1.95
63587515--63587715	94	2.1	96	82	5	239	24	14	27	32	1.95
63588621--63589511	445	2.0	445	97	0	1665	31	14	21	32	1.93
63592676--63592825	18	8.3	18	74	14	139	42	9	12	36	1.74
63592676--63592828	19	8.4	19	77	12	151	42	9	12	35	1.74
63592676--63592788	55	2.1	54	88	1	163	43	9	12	34	1.75
63592711--63592805	36	2.6	36	93	3	156	42	10	11	35	1.76
63592718--63592850	36	3.6	36	86	4	135	43	9	12	34	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63592710--63592883	19	9.2	20	72	15	106	40	9	11	38	1.75
63592676--63592828	55	2.8	55	80	7	161	42	9	12	35	1.74
63592674--63592849	37	4.9	35	77	10	142	43	9	12	35	1.74
63593363--63593400	19	2.1	18	90	5	58	2	15	0	81	0.80
63593348--63593415	26	2.5	26	80	17	77	1	17	2	77	0.96
63593740--63593808	27	2.6	26	78	19	79	0	24	0	75	0.81
63593734--63593809	19	4.0	19	80	10	84	0	25	0	75	0.81
63593741--63593809	13	5.5	12	85	14	79	0	26	0	73	0.83
63593734--63593809	26	3.0	24	83	12	91	0	25	0	75	0.81
63593891--63593951	22	2.6	23	75	22	63	0	29	0	70	0.88
63594347--63594506	29	5.4	30	74	9	123	38	5	22	33	1.76
63594666--63596329	235	7.1	235	85	6	1960	35	19	16	27	1.94
63596120--63596316	79	2.6	73	85	9	256	33	22	17	26	1.96
63594679--63596330	76	21.1	79	82	7	1752	35	19	16	27	1.94
63597186--63597212	11	2.5	11	100	0	54	0	0	7	92	0.38
63602925--63603168	50	4.9	50	89	0	353	20	30	22	26	1.98
63603262--63603291	13	2.3	13	94	0	51	50	13	3	33	1.58
63605195--63605243	4	12.2	4	100	0	98	51	0	24	24	1.49
63606895--63607060	71	2.3	72	85	8	230	42	9	11	36	1.73
63606982--63607040	16	3.4	16	70	17	55	44	6	8	40	1.61
63606878--63607117	18	13.1	17	69	20	114	41	9	11	37	1.74
63606895--63607093	36	5.4	36	85	6	224	42	9	12	36	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63606895--63607118	36	6.1	38	80	12	138	40	9	11	38	1.74
63607594--63607633	7	6.1	7	82	11	50	0	17	0	82	0.67
63607594--63607641	14	3.4	14	83	16	64	0	18	0	81	0.70
63607583--63607631	20	2.6	19	84	12	66	0	14	2	83	0.73
63607583--63607629	24	1.9	24	87	12	69	0	14	2	82	0.75
63607596--63607639	20	2.2	20	88	8	63	0	20	0	79	0.73
63607949--63607988	13	3.1	13	92	0	62	5	22	0	72	1.04
63607947--63607996	13	3.5	15	81	15	52	4	22	0	74	0.99
63607953--63607997	13	3.5	12	85	11	54	2	24	0	73	0.95
63608087--63608135	13	3.5	15	78	18	52	2	26	0	71	0.97
63608523--63608682	29	5.5	30	73	9	116	41	5	20	32	1.76
63609837--63610333	27	17.7	27	76	9	397	34	18	21	25	1.96
63609837--63610316	229	2.1	228	81	6	552	34	18	21	25	1.96
63610045--63610303	87	3.0	87	80	7	283	36	18	19	25	1.95
63610166--63610282	60	2.0	60	81	6	139	34	20	19	25	1.96
63610351--63610484	24	5.6	24	83	5	155	26	7	21	44	1.78
63610604--63610653	26	1.9	26	87	0	73	16	18	28	38	1.91
63610616--63610665	26	1.9	26	83	0	64	12	20	30	38	1.88
63610659--63610876	64	3.4	64	85	2	303	23	20	18	37	1.94
63610659--63610890	32	7.3	32	84	2	270	22	20	18	37	1.94
63613681--63614023	27	12.7	27	81	2	312	21	16	18	43	1.88
63615512--63615560	25	2.0	25	87	0	71	14	46	16	22	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63617358--63617448	27	3.4	25	72	17	67	21	13	17	47	1.82
63629579--63629641	2	31.5	2	100	0	126	0	49	0	50	1.00
63631080--63631113	14	2.4	14	100	0	68	41	23	20	14	1.89
63634532--63635083	132	4.2	131	87	2	714	29	25	15	29	1.96
63634740--63635285	219	2.5	218	85	3	686	28	25	16	29	1.97
63634532--63635383	263	3.2	263	82	3	781	29	25	16	29	1.96
63634992--63635623	132	4.8	132	92	1	1027	29	25	16	28	1.97
63634832--63635329	219	2.3	219	87	2	687	28	25	16	29	1.97
63634642--63635620	350	2.8	350	82	3	1078	29	25	16	28	1.97
63636108--63636303	108	1.8	108	92	0	329	46	10	17	25	1.80
63636640--63636689	7	7.4	7	80	14	61	4	14	0	82	0.82
63636639--63636689	6	7.8	6	81	16	50	3	15	0	80	0.86
63636640--63636689	12	3.8	13	82	15	66	4	14	0	82	0.82
63637143--63637187	12	3.6	12	82	8	54	2	6	8	82	0.93
63637133--63637207	11	6.5	11	75	13	53	4	6	9	80	1.02
63637143--63637207	11	5.5	11	77	13	58	3	7	7	81	0.96
63637153--63637207	23	2.3	25	81	6	69	3	9	5	81	0.95
63638499--63638677	62	2.9	62	95	0	322	34	5	18	40	1.75
63642993--63643046	24	2.3	24	80	3	65	51	0	1	46	1.11
63644412--63644436	3	8.3	3	100	0	50	0	32	0	68	0.90
63643988--63645392	626	2.2	625	91	3	2275	27	14	18	38	1.90
63661581--63661644	29	2.2	29	91	2	103	21	14	15	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63661912--63662104	97	2.0	97	97	0	368	29	18	23	29	1.98
63663674--63663865	96	2.0	97	95	1	350	29	17	23	29	1.97
63665436--63665624	97	1.9	97	97	0	360	29	19	23	28	1.98
63666875--63666927	27	1.9	27	84	3	70	22	16	16	43	1.88
63667193--63667384	96	2.0	97	96	1	359	29	18	23	28	1.98
63668822--63669049	124	1.8	124	89	1	359	29	17	21	30	1.96
63668952--63669144	97	2.0	97	95	0	350	29	18	23	29	1.98
63672268--63672500	56	4.2	56	98	1	452	46	4	12	36	1.61
63672268--63672500	111	2.1	111	98	1	450	46	4	12	36	1.61
63672494--63672770	29	9.7	29	85	3	346	22	1	29	46	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221