genome.fa.s26.2.7.7.80.10.50.1000.167.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  167  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49956076--49956112	3	12.7	3	94	5	67	70	0	0	29	0.88
49962104--49962205	9	11.4	9	88	2	134	23	8	25	42	1.83
49962270--49962325	27	2.1	27	86	0	76	37	8	17	35	1.82
49965096--49965408	68	4.6	68	75	5	195	28	23	13	34	1.93
49969223--49969327	48	2.2	48	87	3	158	20	17	24	38	1.93
49969236--49969312	26	3.1	26	72	14	90	22	23	20	33	1.97
49969222--49969339	48	2.4	47	80	8	139	21	18	22	37	1.94
49973901--49973957	18	3.1	19	72	20	50	26	1	5	66	1.22
49974923--49974948	10	2.6	10	100	0	52	57	0	7	34	1.27
49996907--49997016	53	2.1	53	81	6	127	40	3	30	24	1.72
50017841--50017903	25	2.6	24	75	5	63	19	26	19	34	1.95
50017993--50018069	25	2.9	27	75	11	79	19	24	20	35	1.96
50018010--50018092	27	3.2	26	77	11	82	15	27	21	34	1.94
50018076--50018143	25	2.7	25	88	0	109	16	29	19	35	1.93
50018580--50018608	12	2.4	12	100	0	58	13	20	31	34	1.92
50020901--50020954	25	2.1	25	86	6	72	38	11	1	48	1.50
50021492--50021525	14	2.5	14	95	4	61	14	0	35	50	1.44
50027248--50028760	755	2.0	755	99	0	3017	36	16	24	22	1.94
50034842--50035228	50	7.6	50	76	9	318	29	21	22	26	1.99
50034829--50035231	100	4.0	100	84	5	450	29	21	22	26	1.99
50038140--50038165	13	2.0	13	100	0	52	38	0	7	53	1.30
50038178--50038230	27	2.0	27	85	7	72	47	5	16	30	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50042844--50042868	13	1.9	13	100	0	50	40	24	4	32	1.73
50047521--50047587	31	2.2	31	86	5	91	55	5	19	19	1.63
50061011--50061062	23	2.3	23	79	0	59	34	7	30	26	1.85
50063794--50063829	17	2.2	17	95	5	65	58	5	0	36	1.22
50066161--50066217	22	2.5	22	80	8	62	61	1	1	35	1.17
50079051--50079079	5	5.8	5	100	0	58	58	20	0	20	1.39
50081918--50081982	15	4.2	15	75	7	58	30	20	0	49	1.49
50082568--50082620	22	2.5	21	78	6	61	60	1	0	37	1.08
50082575--50082623	22	2.1	22	85	7	62	65	2	0	32	1.04
50100877--50100984	51	2.1	52	91	1	173	30	19	6	43	1.76
50117106--50117343	72	3.3	72	88	2	329	55	15	5	23	1.62
50117772--50117819	18	2.7	18	90	0	69	41	12	12	33	1.80
50119429--50119535	53	2.0	53	100	0	214	24	18	16	40	1.91
50128267--50128357	24	4.0	22	75	12	76	38	0	1	60	1.04
50129238--50129264	12	2.2	12	100	0	54	48	7	0	44	1.31
50130003--50130045	19	2.3	19	91	0	68	6	6	16	69	1.32
50135963--50136028	29	2.2	29	79	12	71	45	6	15	33	1.70
50141421--50141485	23	2.7	25	76	13	73	35	23	21	20	1.96
50141954--50141994	21	2.0	21	90	0	64	46	17	0	36	1.48
50148952--50149031	25	3.2	25	70	7	81	33	21	25	20	1.97
50149610--50149654	21	2.2	20	84	4	54	44	13	0	42	1.43
50150163--50150190	13	2.2	13	100	0	56	21	14	0	64	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50154904--50154930	5	5.4	5	100	0	54	18	0	0	81	0.69
50157481--50157541	28	2.2	28	88	5	88	32	22	9	34	1.87
50163132--50163178	21	2.2	22	84	3	60	21	34	19	25	1.96
50167393--50167457	21	2.9	24	71	15	66	56	4	1	36	1.29
50175753--50175845	46	2.0	45	85	6	125	45	40	3	10	1.55
50175761--50175845	23	3.8	22	83	9	109	45	38	3	11	1.58
50175810--50175879	34	2.0	35	91	2	115	52	31	1	14	1.50
50175832--50175857	12	2.2	12	100	0	52	57	26	0	15	1.38
50175787--50175903	57	2.0	58	86	4	166	49	34	2	13	1.56
50182386--50182447	25	2.5	25	71	23	58	27	24	19	29	1.98
50186986--50187013	10	2.8	10	100	0	56	60	10	0	28	1.30
50187100--50187284	37	5.1	37	86	2	266	42	27	11	17	1.85
50187100--50187285	73	2.5	74	85	1	268	42	27	11	18	1.85
50190710--50190797	37	2.4	37	84	1	115	15	12	28	43	1.84
50197532--50197586	27	2.0	27	86	6	76	32	14	9	43	1.77
50199059--50199095	20	1.9	19	89	10	58	37	13	13	35	1.84
50199463--50199544	31	2.7	31	75	5	78	23	7	12	57	1.60
50206093--50206125	16	2.0	17	88	5	50	33	6	27	33	1.81
50207938--50207972	13	2.7	13	95	0	61	14	25	42	17	1.86
50215500--50215534	13	2.7	13	86	0	52	14	25	40	20	1.90
50219651--50219818	40	4.2	40	82	8	148	27	27	20	24	1.99
50219686--50219871	80	2.3	80	83	9	229	27	27	20	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50219688--50219871	40	4.6	40	83	7	205	27	27	21	23	1.99
50226326--50226381	29	1.9	29	85	0	76	37	12	7	42	1.70
50230357--50230409	26	2.0	26	96	0	97	37	5	9	47	1.60
50233857--50233903	21	2.3	20	82	7	58	38	0	14	46	1.45
50233865--50233905	21	2.0	21	95	0	73	36	0	12	51	1.40
50244077--50244114	18	2.1	18	100	0	76	57	5	10	26	1.53
50245434--50245499	33	2.0	33	100	0	132	45	12	15	27	1.81
50245805--50245834	7	4.3	7	100	0	60	43	16	13	26	1.85
50247454--50247591	70	2.0	69	92	1	231	40	15	7	36	1.75
50250227--50250286	27	2.2	27	90	0	93	18	33	23	25	1.97
50250310--50250343	15	2.3	15	90	10	52	61	5	0	32	1.20
50250319--50250611	105	2.9	102	86	6	407	53	15	0	30	1.44
50263274--50263312	17	2.2	17	86	4	51	30	2	5	61	1.31
50267454--50267580	43	2.8	45	79	5	150	40	15	18	24	1.90
50267595--50267711	45	2.6	45	87	0	171	40	18	20	20	1.92
50269195--50269236	20	2.1	20	86	8	59	19	4	19	57	1.58
50269699--50269933	29	8.0	29	80	9	219	50	12	13	23	1.75
50269701--50269933	59	4.0	59	78	6	233	50	12	13	23	1.76
50269699--50269933	88	2.7	86	81	7	276	50	12	13	23	1.75
50279156--50279409	138	1.8	137	86	2	366	34	25	20	19	1.96
50282359--50282890	108	4.9	108	90	2	809	33	18	18	30	1.94
50285606--50285651	17	2.8	18	84	15	64	28	41	30	0	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50292219--50292287	5	13.8	5	77	15	63	81	0	17	1	0.77
50292221--50292286	27	2.4	27	80	16	75	80	0	18	1	0.79
50292219--50292289	31	2.3	30	84	15	92	80	0	18	1	0.79
50293587--50293735	44	3.4	43	79	5	131	28	19	24	26	1.99
50294315--50294464	44	3.4	44	77	10	155	30	16	25	28	1.97
50294298--50294467	44	3.9	44	78	5	148	28	18	24	28	1.98
50294913--50294952	19	2.1	19	85	0	53	37	47	10	5	1.59
50295284--50295324	12	3.2	13	83	12	50	80	2	9	7	0.99
50296887--50297115	102	2.2	103	90	1	361	22	17	27	32	1.96
50297018--50297187	76	2.2	76	90	2	261	22	16	27	33	1.95
50297018--50297230	76	2.8	75	85	4	259	22	18	26	32	1.97
50301194--50301238	23	2.0	22	82	4	54	40	6	17	35	1.76
50301629--50301677	23	2.2	22	82	10	55	36	2	0	61	1.08
50302154--50302180	3	9.0	3	100	0	54	33	0	0	66	0.92
50307518--50307551	9	4.0	9	85	14	54	55	11	0	32	1.36
50307518--50307554	16	2.3	16	95	0	65	54	10	0	35	1.36
50307624--50307665	16	2.6	16	92	0	66	42	7	2	47	1.43
50307639--50307694	23	2.5	23	82	2	69	44	1	1	51	1.22
50308796--50309025	102	2.2	103	89	1	345	21	19	26	32	1.97
50308927--50309139	76	2.8	76	79	1	248	21	18	25	34	1.96
50311409--50311433	4	6.2	4	100	0	50	24	0	0	76	0.80
50312044--50312195	76	2.0	76	100	0	304	30	25	17	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50312932--50312964	14	2.4	14	90	5	50	45	3	3	48	1.33
50322932--50323016	35	2.7	31	83	10	102	25	18	15	40	1.90
50331634--50331672	20	1.9	21	84	5	53	58	7	2	30	1.39
50336882--50336949	5	13.6	5	74	0	55	35	22	8	33	1.85
50336882--50336949	30	2.3	30	89	0	100	35	22	8	33	1.85
50343399--50343451	21	2.5	21	79	11	63	11	15	43	30	1.81
50343490--50343516	12	2.2	12	100	0	54	14	29	25	29	1.95
50346051--50346121	35	2.0	35	91	0	115	33	23	5	36	1.79
50351177--50351247	35	2.0	35	91	0	115	29	26	7	36	1.83
50363192--50363234	17	2.5	17	88	7	61	13	23	34	27	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221