genome.fa.s26.2.7.7.80.10.50.1000.199.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  199  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58210989--58211078	44	2.0	44	97	0	171	37	15	24	22	1.93
58222338--58222362	11	2.3	11	100	0	50	84	0	0	16	0.63
58223575--58223605	14	2.2	14	100	0	62	29	32	6	32	1.83
58229208--58229243	18	2.1	17	89	5	54	80	0	2	16	0.83
58229638--58229663	13	2.0	13	100	0	52	15	0	0	84	0.62
58251134--58251184	9	5.7	9	88	6	77	43	21	9	25	1.83
58251840--58251895	28	2.0	28	92	0	94	42	3	10	42	1.56
58253772--58253803	3	10.7	3	100	0	64	65	0	0	34	0.93
58254782--58254819	3	12.7	3	100	0	76	68	0	0	31	0.90
58255846--58256099	95	2.7	92	80	7	228	30	18	15	35	1.92
58255888--58256099	95	2.2	95	82	4	264	30	17	16	35	1.93
58265314--58265346	3	11.0	3	100	0	66	66	0	0	33	0.92
58269413--58269474	27	2.3	27	83	5	81	56	4	4	33	1.42
58269425--58269477	24	2.2	24	86	0	70	58	3	5	32	1.39
58270859--58270923	21	3.1	21	75	4	69	38	15	26	20	1.92
58270833--58270956	42	3.0	41	80	9	126	44	16	20	17	1.87
58275251--58275454	41	5.0	41	86	4	236	32	25	21	20	1.97
58281689--58282016	114	2.9	112	82	6	392	25	20	25	28	1.99
58281916--58282089	73	2.4	73	89	1	260	25	17	27	29	1.98
58282363--58282410	16	2.9	16	84	3	69	20	0	45	33	1.52
58282385--58282431	22	2.1	23	92	4	78	19	0	48	31	1.49
58282396--58282434	7	5.4	7	87	6	51	15	0	43	41	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58285686--58286131	194	2.3	193	86	1	597	28	13	18	39	1.89
58287634--58287762	43	3.1	43	78	2	129	27	14	25	32	1.95
58290142--58290250	21	5.2	21	74	5	69	42	17	22	17	1.89
58295471--58295533	30	2.1	30	90	0	99	58	14	1	25	1.45
58302744--58302770	6	4.5	6	100	0	54	33	0	0	66	0.92
58308804--58308837	16	2.1	16	100	0	68	47	11	0	41	1.40
58309706--58309822	58	2.0	58	100	0	234	25	22	13	38	1.91
58314114--58314172	10	5.8	10	93	2	64	45	54	0	0	0.99
58314122--58314172	5	10.2	5	97	0	93	43	56	0	0	0.99
58314826--58314864	19	2.1	19	95	0	69	28	5	23	43	1.75
58323313--58323360	24	2.0	23	84	4	60	68	2	4	25	1.18
58324911--58324967	28	2.0	28	82	0	69	19	12	10	57	1.63
58325139--58325183	22	2.1	22	88	12	67	60	13	2	24	1.45
58333322--58333389	8	9.0	8	73	15	56	58	0	0	41	0.98
58333352--58333385	15	2.2	15	89	5	50	67	0	0	32	0.91
58333383--58333413	16	1.9	16	93	0	53	45	3	9	41	1.53
58338981--58339032	6	8.7	6	95	0	86	38	11	15	34	1.83
58345291--58345337	18	2.6	18	74	16	51	55	0	0	44	0.99
58348940--58348973	17	2.0	17	88	11	52	35	14	0	50	1.44
58354268--58354327	9	6.4	9	86	7	75	65	0	1	33	1.03
58354251--58354360	40	2.8	41	83	9	156	59	0	3	37	1.15
58354325--58354350	11	2.4	11	100	0	52	53	0	7	38	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58355544--58355696	77	2.0	76	93	2	263	27	13	8	50	1.71
58357918--58357955	20	1.9	20	89	10	60	28	10	15	44	1.80
58359209--58359246	20	1.9	20	88	0	58	7	0	18	73	1.06
58361831--58361873	17	2.5	17	84	3	59	51	0	0	48	1.00
58362154--58362178	9	2.8	9	100	0	50	68	0	24	8	1.16
58362449--58362482	12	2.9	12	91	4	52	23	0	11	64	1.26
58362526--58362716	101	1.9	98	92	3	319	26	1	15	57	1.45
58365024--58365305	75	3.7	76	86	6	387	26	7	13	52	1.67
58368416--58368468	18	3.0	18	77	2	54	5	26	0	67	1.12
58374501--58374555	12	4.6	12	78	13	60	65	0	5	29	1.15
58374501--58374555	3	18.3	3	75	20	53	65	0	5	29	1.15
58374501--58374563	21	3.0	21	86	11	85	65	0	4	30	1.13
58374516--58374579	30	2.0	30	82	14	76	67	0	4	28	1.11
58374619--58374700	9	9.5	8	72	22	51	58	3	6	31	1.40
58376666--58376942	42	6.7	42	79	9	286	22	20	25	31	1.98
58376680--58376946	82	3.3	82	92	0	435	22	19	26	31	1.98
58377125--58377464	72	4.6	72	87	6	477	31	19	16	32	1.94
58377482--58377673	69	2.7	71	81	5	235	34	24	14	26	1.94
58377624--58377755	54	2.5	54	96	1	239	36	18	14	30	1.91
58377555--58377931	176	2.1	176	98	0	718	36	22	14	27	1.93
58377800--58377998	54	3.7	54	91	2	319	35	18	15	31	1.91
58377800--58377998	109	1.8	107	91	2	326	35	18	15	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58378004--58378301	73	4.1	73	91	1	465	34	16	16	32	1.92
58395538--58395578	22	1.9	22	90	5	66	65	14	9	9	1.46
58396697--58396752	22	2.5	22	85	0	67	66	5	3	25	1.29
58396912--58396964	21	2.4	21	79	17	63	43	5	3	47	1.45
58398234--58398300	34	1.9	35	88	8	102	34	8	8	47	1.66
58398291--58398365	32	2.3	32	84	4	89	28	8	16	48	1.74
58452663--58452733	35	2.0	35	100	0	142	25	8	8	57	1.56
58457798--58458059	44	5.8	44	70	13	154	31	19	21	27	1.98
58457984--58458102	44	2.7	44	79	5	116	31	19	21	27	1.97
58457836--58458134	142	2.1	142	93	0	510	32	19	20	27	1.97
58465922--58466016	4	23.8	4	100	0	190	50	24	0	25	1.49
58469080--58469121	22	1.9	22	85	0	57	38	2	16	42	1.61
58473931--58474208	108	2.6	107	80	5	280	32	23	17	26	1.97
58475204--58475527	67	4.8	67	91	1	445	35	17	24	23	1.95
58475204--58475577	67	5.6	66	87	1	433	36	17	23	23	1.95
58475204--58475579	201	1.9	201	84	4	517	36	17	23	23	1.95
58476427--58476459	9	3.8	9	92	4	50	18	3	0	78	0.87
58477254--58477302	25	2.0	25	91	0	80	30	2	6	61	1.32
58481737--58481799	29	2.1	29	88	2	90	53	14	7	23	1.66
58486528--58486560	11	3.1	11	86	4	50	78	6	15	0	0.93
58489390--58489456	34	2.0	34	96	0	125	37	19	8	34	1.83
58500461--58500534	29	2.5	28	78	6	76	36	14	27	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58500556--58500651	44	2.2	44	90	0	147	29	20	34	15	1.94
58503015--58503071	25	2.3	23	78	18	62	52	5	0	42	1.24
58503469--58503511	18	2.4	18	88	0	59	44	9	25	20	1.81
58503576--58507951	730	6.0	730	98	0	8450	29	19	17	34	1.94
58508917--58508985	30	2.3	30	89	0	102	39	0	24	36	1.56
58511376--58511407	16	2.0	16	93	0	55	34	25	28	12	1.92
58512087--58512199	26	4.4	25	76	6	102	60	5	6	28	1.43
58512129--58512351	26	7.9	27	67	17	98	60	4	5	29	1.40
58512206--58512349	27	5.2	27	72	14	107	59	2	5	31	1.35
58512400--58512456	25	2.2	25	84	12	71	66	1	5	26	1.22
58514027--58514065	19	2.1	19	85	9	53	61	5	2	30	1.31
58523768--58523795	12	2.3	12	100	0	56	21	28	0	50	1.49
58523766--58523830	11	6.0	10	81	15	60	23	27	1	47	1.60
58525676--58525718	18	2.4	18	88	0	59	18	27	9	44	1.80
58526356--58526402	7	6.7	7	85	0	58	46	31	0	21	1.51
58527425--58527689	125	2.1	126	87	2	390	27	22	17	32	1.96
58527872--58527930	23	2.3	26	86	11	79	52	32	0	15	1.43
58528416--58528462	19	2.5	18	83	10	58	42	0	0	57	0.98
58528422--58528473	21	2.5	21	78	6	61	50	0	0	50	1.00
58529830--58529881	6	8.7	6	91	0	86	36	15	48	0	1.45
58544308--58544336	2	14.5	2	100	0	58	51	0	0	48	1.00
58545384--58545409	11	2.4	11	100	0	52	38	7	0	53	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58545374--58545479	42	2.5	40	89	9	149	33	2	0	62	1.16
58545947--58546010	19	3.3	20	74	20	64	34	0	0	65	0.93
58547107--58547138	3	10.7	3	100	0	64	34	0	0	65	0.93
58547420--58547487	11	6.4	11	77	17	72	38	2	1	57	1.23
58547409--58547480	30	2.4	30	86	9	110	40	1	1	56	1.16
58547490--58547540	20	2.4	22	83	9	79	33	1	0	64	1.05
58553245--58553284	17	2.4	17	87	4	55	60	0	0	40	0.97
58553513--58553558	21	2.2	20	88	3	65	69	13	2	15	1.28
58558630--58558708	13	6.5	13	73	16	80	49	11	1	37	1.47
58558630--58558708	36	2.2	36	95	0	140	49	11	1	37	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221