genome.fa.s26.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  145  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44413761--44413824	24	2.6	24	76	16	60	32	10	1	54	1.45
44428519--44428552	10	3.5	10	88	4	52	11	38	8	41	1.73
44437499--44437525	7	3.9	7	100	0	54	29	14	29	25	1.95
44437500--44437537	14	2.8	14	88	4	51	31	21	21	26	1.98
44438304--44438363	21	2.9	21	85	11	72	36	3	0	60	1.14
44438307--44438377	10	6.8	10	75	13	63	39	2	0	57	1.13
44438304--44438363	20	3.0	20	87	7	77	36	3	0	60	1.14
44440026--44440056	13	2.5	13	94	5	55	3	35	0	61	1.12
44442246--44442403	34	4.6	33	75	6	136	27	11	16	44	1.82
44445747--44445942	105	1.9	105	83	2	259	27	28	20	23	1.99
44467589--44467613	13	1.9	13	100	0	50	40	44	0	16	1.47
44467600--44467672	19	3.5	19	70	20	65	41	36	1	20	1.61
44468209--44468266	8	7.0	8	96	3	98	27	12	24	36	1.91
44469095--44469316	115	1.9	115	80	7	254	35	25	10	27	1.89
44469408--44469438	9	3.4	9	90	0	53	25	12	22	38	1.90
44469491--44469528	9	4.2	9	89	0	58	44	10	10	34	1.73
44470529--44470555	5	5.4	5	100	0	54	22	18	18	40	1.91
44472833--44472870	2	19.0	2	100	0	76	0	50	0	50	1.00
44476402--44476429	9	3.1	9	100	0	56	46	10	10	32	1.73
44477314--44477339	5	5.2	5	100	0	52	23	19	19	38	1.93
44482755--44482792	16	2.4	16	91	4	60	89	7	0	2	0.57
44482758--44482791	12	2.9	11	91	8	50	88	8	0	2	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44483224--44483257	12	2.9	12	91	4	52	79	0	14	5	0.91
44483225--44483275	17	3.0	17	85	5	59	78	1	17	1	0.94
44483225--44483275	13	4.5	11	79	20	52	78	1	17	1	0.94
44484205--44484570	89	4.1	89	82	1	378	30	24	21	23	1.99
44484276--44485117	89	9.5	89	85	1	919	28	24	23	23	1.99
44484457--44485117	355	1.9	356	88	1	1022	28	24	23	23	1.99
44484456--44485164	266	2.7	266	84	2	922	28	23	23	24	2.00
44485250--44485450	88	2.3	87	78	5	208	25	20	26	26	1.99
44485386--44485544	45	3.5	44	79	6	167	30	18	24	26	1.98
44485070--44485491	220	1.9	221	79	5	469	27	19	25	27	1.99
44485337--44485544	44	4.6	44	78	5	168	29	19	24	26	1.98
44485673--44485782	44	2.5	44	87	0	148	28	20	20	30	1.98
44485714--44485839	44	2.9	44	84	5	141	31	19	21	26	1.97
44497836--44497862	7	3.9	7	100	0	54	88	0	11	0	0.50
44497834--44497867	17	2.1	16	88	5	50	88	0	11	0	0.52
44498303--44498421	40	2.9	40	79	9	100	23	25	29	21	1.99
44499696--44499729	13	2.5	13	90	4	50	29	0	5	64	1.17
44503105--44503318	47	4.5	47	77	5	207	26	22	17	34	1.96
44503108--44503318	94	2.2	95	84	4	257	26	22	17	34	1.96
44505328--44505513	51	3.7	50	77	5	205	31	27	16	23	1.96
44505326--44505509	100	1.8	101	88	4	282	32	27	16	23	1.96
44510692--44510732	22	1.9	21	85	5	55	31	2	12	53	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44510656--44510917	134	2.0	126	90	5	407	35	8	12	43	1.72
44515105--44515186	20	4.1	19	71	20	69	10	26	18	43	1.83
44515068--44515255	60	3.2	59	82	5	218	12	28	19	39	1.87
44515211--44515263	20	2.7	20	80	13	74	9	30	18	41	1.82
44521316--44521478	28	5.8	28	82	0	191	30	18	19	31	1.96
44521316--44521457	14	10.1	14	70	0	95	29	19	20	30	1.97
44522743--44522824	43	2.0	40	84	11	105	25	26	19	28	1.99
44524527--44524560	17	1.9	18	94	5	61	17	5	20	55	1.62
44525451--44525545	43	2.2	43	92	3	156	30	29	15	24	1.96
44525464--44525572	43	2.5	44	86	4	150	33	29	11	25	1.92
44531278--44531584	9	32.8	9	71	14	149	34	2	18	43	1.66
44531237--44531397	74	2.1	76	87	7	238	33	1	19	45	1.59
44531898--44531973	23	3.3	23	90	0	125	30	25	21	23	1.99
44534946--44534990	21	2.1	21	87	0	63	46	11	28	13	1.77
44535972--44536068	7	13.6	7	73	12	72	45	35	0	19	1.51
44535971--44536068	14	6.9	14	77	13	101	44	35	0	19	1.51
44535971--44536068	28	3.4	29	84	6	112	44	35	0	19	1.51
44536115--44536330	7	30.4	7	74	9	89	44	32	0	21	1.59
44536157--44536325	43	4.1	42	68	17	131	45	31	0	21	1.57
44536115--44536330	14	15.2	14	72	9	98	44	32	0	21	1.59
44536165--44536325	57	2.8	57	80	2	153	45	31	0	21	1.56
44536328--44536538	118	1.8	116	81	6	264	29	18	18	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44539866--44540062	42	4.6	42	85	2	252	29	14	25	29	1.95
44544770--44544809	20	2.0	21	90	5	64	50	0	0	50	1.00
44546181--44546233	22	2.3	23	80	3	63	58	0	7	33	1.26
44547533--44547571	18	2.2	18	86	4	53	30	25	25	17	1.97
44552288--44552378	35	2.6	35	82	5	94	38	24	19	17	1.93
44554279--44554309	15	2.0	16	93	6	55	0	0	70	29	0.87
44555508--44555546	19	2.1	19	100	0	78	46	10	10	33	1.72
44558439--44558468	7	4.3	7	100	0	60	60	0	0	40	0.97
44558986--44559045	31	1.9	31	93	6	104	61	0	0	38	0.96
44559013--44559037	10	2.5	10	100	0	50	56	0	0	44	0.99
44559033--44559084	9	5.4	9	78	17	52	71	0	3	25	1.03
44580419--44580485	21	3.2	21	74	4	55	19	26	23	29	1.98
44581160--44581216	29	2.0	29	89	0	87	17	14	42	26	1.87
44583137--44583183	20	2.3	21	85	10	62	34	12	27	25	1.92
44584925--44584959	18	1.9	18	88	11	54	22	20	0	57	1.41
44584973--44585048	30	2.5	30	72	4	82	7	21	2	68	1.28
44585015--44585061	16	2.8	17	75	18	53	6	19	0	74	1.03
44585028--44585071	21	2.1	21	88	12	65	4	20	0	75	0.98
44586029--44586084	3	18.7	3	100	0	112	67	0	0	32	0.91
44586118--44586157	11	3.6	11	100	0	80	15	0	7	77	0.98
44587261--44587299	10	3.7	11	86	10	55	30	25	12	30	1.93
44587261--44587299	21	1.9	20	89	5	60	30	25	12	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44587261--44587305	20	2.2	20	84	7	56	28	26	15	28	1.96
44589002--44589043	22	2.0	21	85	4	57	30	2	11	54	1.49
44591881--44591915	12	2.8	12	91	4	52	68	0	20	11	1.20
44591894--44591937	18	2.4	19	81	11	56	77	0	15	6	0.97
44591906--44591945	15	2.7	15	80	0	53	80	0	17	2	0.83
44591888--44591955	27	2.5	27	77	18	70	72	0	19	8	1.11
44591988--44592027	21	1.9	21	84	0	53	42	5	32	20	1.73
44593824--44593865	22	2.0	21	90	4	66	28	0	14	57	1.38
44602418--44602451	3	11.7	3	93	6	61	32	0	0	67	0.91
44604208--44604276	36	1.9	36	85	5	95	59	5	7	27	1.47
44618279--44618325	19	2.4	20	82	10	53	48	23	8	19	1.75
44624660--44624713	24	2.2	24	80	12	56	31	1	18	48	1.59
44626050--44626106	25	2.3	25	87	6	80	22	28	35	14	1.93
44629426--44629506	6	12.7	6	75	17	65	80	6	3	9	1.01
44631186--44631250	15	4.4	16	78	18	61	73	0	7	18	1.06
44631186--44631250	30	2.2	30	84	13	82	73	0	7	18	1.06
44633107--44633145	17	2.3	17	100	0	78	30	25	12	30	1.93
44649128--44649161	16	2.1	16	88	0	50	41	20	2	35	1.68
44672859--44672916	21	2.8	21	71	5	55	20	27	24	27	1.99
44677294--44677384	6	14.3	6	78	11	83	78	6	1	14	1.01
44677294--44677384	19	4.7	19	77	17	98	78	6	1	14	1.01
44679048--44679111	33	1.9	33	83	3	83	26	25	26	21	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44679563--44679710	55	2.8	53	82	2	188	21	15	20	42	1.89
44679520--44679706	27	6.9	27	81	4	180	22	16	18	43	1.88
44681414--44681466	27	2.0	26	88	3	79	69	1	5	22	1.19
44696795--44697045	27	9.3	27	85	2	344	44	23	14	16	1.85
44696790--44697028	80	3.0	80	87	4	349	45	23	14	17	1.84
44696795--44697045	107	2.3	107	87	3	362	44	23	14	16	1.85
44699017--44699053	19	2.0	19	89	5	58	51	2	8	37	1.46
44699051--44699132	40	2.0	40	88	4	121	40	10	15	32	1.83
44701265--44701306	21	2.0	21	86	4	59	33	7	11	47	1.68
44712125--44712153	12	2.3	13	94	5	51	24	0	3	72	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221