genome.fa.s26.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  117  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35954177--35954222	23	2.0	24	87	8	69	23	8	28	39	1.84
35954374--35954433	22	2.8	22	78	12	70	18	6	43	31	1.76
35954545--35954607	28	2.2	28	80	5	74	28	3	25	42	1.70
35954545--35954639	14	6.9	14	72	13	54	25	2	27	45	1.65
35954674--35954726	21	2.5	21	72	6	54	26	0	20	52	1.46
35955115--35955366	83	3.1	83	77	9	248	28	15	21	34	1.94
35956245--35956338	46	2.0	46	100	0	188	31	2	15	50	1.57
35957187--35957328	18	7.1	19	70	21	78	45	2	1	50	1.22
35957188--35957333	19	7.2	20	77	15	113	45	2	1	51	1.21
35957207--35957333	20	6.0	22	69	21	67	44	2	1	51	1.24
35957345--35957490	12	12.2	12	73	19	69	48	14	0	36	1.44
35957420--35957456	12	3.1	12	100	0	74	51	8	0	40	1.32
35957476--35957767	9	34.7	9	71	14	169	46	20	1	31	1.61
35957504--35957671	16	10.6	16	65	17	55	45	21	1	31	1.59
35957469--35957713	59	4.3	58	76	10	215	46	20	2	31	1.62
35957453--35957595	25	5.8	25	74	11	109	43	20	2	33	1.64
35957582--35957738	25	6.3	25	82	2	172	47	19	1	31	1.58
35957559--35957738	50	3.6	50	79	5	186	47	20	1	31	1.58
35963237--35963278	21	2.0	21	95	0	75	30	14	45	9	1.77
35963186--35963362	87	2.0	87	87	0	255	39	14	31	14	1.86
35963752--35963981	43	5.3	43	83	6	261	26	19	26	26	1.99
35963738--35963981	86	2.8	86	82	5	296	28	19	25	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35964290--35964326	9	4.1	9	92	0	65	45	13	10	29	1.77
35964540--35964599	30	2.0	31	86	3	86	20	36	0	43	1.52
35967145--35967193	6	8.2	6	93	0	71	18	12	18	51	1.76
35967683--35967719	15	2.5	15	86	4	58	67	2	2	27	1.17
35970754--35970841	42	2.1	43	85	6	117	28	19	25	27	1.99
35970788--35970971	43	4.3	43	81	6	189	28	28	17	25	1.98
35971340--35971481	66	2.2	66	87	5	198	14	27	17	40	1.89
35971374--35971504	66	2.0	66	87	3	192	15	25	18	41	1.89
35976720--35976797	29	2.7	28	84	11	104	25	14	30	29	1.94
35976750--35977077	174	1.9	174	96	0	602	29	14	24	30	1.95
35984856--35985185	174	1.9	174	92	0	561	29	14	24	31	1.95
35998523--35998852	174	1.9	174	92	0	561	29	14	24	30	1.95
36002017--36002353	9	39.8	9	70	15	227	31	1	20	46	1.61
36002020--36002334	25	12.6	26	75	12	177	31	1	20	46	1.60
36002022--36002304	16	17.0	16	72	12	134	31	1	20	46	1.59
36002022--36002200	34	4.9	34	72	16	115	30	1	20	47	1.60
36002248--36002346	25	5.1	19	69	27	73	29	1	19	50	1.54
36002022--36002344	118	2.7	117	92	5	528	30	1	20	47	1.59
36002400--36002839	121	3.6	121	96	0	808	44	6	7	40	1.60
36002859--36002953	18	5.1	18	79	14	104	42	0	11	46	1.40
36002858--36003062	39	5.3	39	78	12	199	41	0	11	46	1.46
36002867--36002971	31	3.5	31	71	21	100	42	0	13	43	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36002994--36003045	13	3.9	13	76	14	61	44	0	7	48	1.31
36003073--36003112	21	1.9	21	84	0	53	37	17	5	40	1.72
36004240--36004271	12	2.7	12	95	0	55	68	15	9	6	1.36
36005246--36006139	448	2.0	450	91	0	1432	34	18	15	31	1.92
36006453--36006490	7	5.4	7	87	0	58	31	47	2	18	1.62
36006482--36006522	21	2.0	21	85	4	57	36	41	2	19	1.65
36007416--36007613	41	4.8	41	84	5	240	33	26	20	19	1.97
36007652--36007805	40	3.8	39	82	6	157	22	20	18	37	1.94
36008684--36008802	42	2.8	42	93	0	202	33	21	21	23	1.97
36008689--36009060	84	4.4	83	81	3	368	26	21	19	32	1.97
36008733--36009058	126	2.6	126	83	2	404	25	21	19	33	1.97
36008773--36009061	42	6.9	42	86	3	384	23	21	19	34	1.96
36009377--36009442	21	3.2	21	77	16	75	3	48	16	31	1.62
36011276--36011309	9	3.8	9	88	11	52	32	5	23	38	1.79
36011257--36011915	27	24.6	27	83	7	677	32	1	15	50	1.53
36011257--36011915	36	18.4	36	82	7	677	32	1	15	50	1.53
36011285--36011922	63	10.0	63	86	5	845	32	1	15	50	1.52
36015374--36015408	14	2.4	15	90	4	54	42	37	0	20	1.52
36016322--36016861	115	4.7	112	73	9	412	26	22	18	32	1.97
36022021--36022133	61	1.9	58	87	5	163	41	3	4	50	1.39
36026884--36026974	39	2.4	37	78	7	85	26	28	24	20	1.99
36027142--36027187	23	2.0	24	82	4	58	32	26	0	41	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36027982--36028019	19	2.0	20	84	5	51	0	23	0	76	0.79
36028555--36028601	17	2.8	17	78	9	53	48	4	0	46	1.21
36030021--36030095	37	2.0	37	100	0	150	18	13	21	46	1.83
36033748--36033775	7	4.0	7	100	0	56	28	14	14	42	1.84
36036561--36036830	113	2.4	113	81	4	285	32	19	8	40	1.81
36038691--36038767	36	2.3	32	76	18	84	40	16	23	19	1.91
36047680--36047735	26	2.2	26	83	0	67	28	25	23	23	1.99
36051235--36051363	43	3.0	43	77	6	145	24	18	27	30	1.98
36054678--36054727	24	2.0	26	81	18	61	18	30	8	44	1.78
36055548--36055572	8	3.1	8	100	0	50	76	0	0	24	0.80
36059632--36059658	13	2.1	13	100	0	54	22	22	18	37	1.95
36062821--36062882	28	2.2	29	86	13	94	67	3	1	27	1.15
36062812--36062881	28	2.4	29	83	11	90	70	4	1	24	1.14
36074025--36074091	34	2.0	34	100	0	134	35	20	0	43	1.53
36075035--36075102	29	2.3	29	85	5	93	27	30	13	27	1.94
36074924--36075251	174	1.9	174	95	0	593	30	24	14	29	1.95
36075204--36075282	29	2.7	30	78	13	101	29	29	15	26	1.96
36080038--36080090	27	2.0	27	92	0	88	43	18	11	26	1.84
36080495--36080541	25	1.9	24	82	4	58	55	6	6	31	1.51
36081030--36081454	156	2.8	154	84	6	513	42	8	3	44	1.53
36081352--36081394	20	2.2	20	86	0	59	48	4	0	46	1.22
36083379--36083509	28	4.7	28	84	0	156	36	12	23	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36083379--36083509	56	2.4	56	88	1	183	36	12	23	26	1.91
36085094--36085127	17	2.0	17	88	0	50	41	0	0	58	0.98
36086886--36086926	18	2.3	18	100	0	82	24	29	17	29	1.97
36090063--36090091	15	1.9	15	100	0	58	13	0	37	48	1.43
36104951--36104999	18	2.8	17	82	17	64	28	4	2	65	1.22
36105013--36105049	19	2.0	19	94	5	67	35	0	5	59	1.20
36105013--36105066	19	2.9	18	86	8	65	40	0	3	55	1.17
36105143--36105181	18	2.2	18	90	0	60	30	7	7	53	1.57
36108107--36108506	40	10.0	40	83	3	448	29	23	15	32	1.95
36117217--36117394	27	6.6	27	83	3	205	26	15	28	29	1.96
36117218--36117373	82	1.9	81	88	3	233	26	15	28	29	1.96
36117214--36117394	82	2.2	81	83	2	229	27	15	27	29	1.96
36125405--36125582	27	6.6	27	83	3	205	26	15	28	29	1.96
36125406--36125561	82	1.9	81	88	3	233	26	15	28	29	1.96
36125402--36125582	82	2.2	81	83	2	229	27	15	27	29	1.96
36129105--36129175	27	2.6	27	82	8	74	11	19	38	30	1.87
36129164--36129216	25	2.1	25	100	0	106	15	15	39	30	1.87
36129312--36129354	19	2.3	18	80	11	52	27	18	25	27	1.98
36130103--36130146	18	2.4	18	81	7	54	22	29	15	31	1.95
36130294--36130521	68	3.4	68	85	3	289	23	12	21	42	1.87
36131182--36131325	54	2.7	54	82	2	155	20	25	27	27	1.99
36132205--36132310	37	2.9	37	85	0	131	40	29	11	18	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36132934--36132989	23	2.5	23	74	11	62	60	19	0	19	1.36
36139890--36139947	28	2.1	28	100	0	116	17	10	29	43	1.82
36142204--36142278	36	2.1	36	92	0	123	25	17	12	45	1.82
36143086--36143129	6	7.2	6	89	5	70	50	13	15	20	1.78
36143109--36143208	45	2.2	45	81	0	119	40	16	19	25	1.91
36144420--36144476	30	1.9	29	86	10	80	49	5	0	45	1.24
36144569--36144612	16	2.6	16	79	10	52	47	4	0	47	1.22
36163466--36163583	50	2.3	50	85	5	148	33	16	13	36	1.88
36164969--36165006	11	3.5	11	85	0	58	68	2	7	21	1.28
36165911--36165949	18	2.2	18	85	0	51	71	2	20	5	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221