genome.fa.s26.2.7.7.80.10.50.1000.187.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  187  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55274014--55274208	98	2.0	98	94	0	345	36	24	10	28	1.89
55275666--55275778	19	5.8	19	87	4	163	36	15	8	39	1.78
55275643--55275778	40	3.4	38	84	8	164	38	14	8	38	1.76
55275666--55275777	59	1.9	59	94	0	197	36	14	8	40	1.77
55275658--55275778	40	3.2	38	84	10	167	36	14	8	40	1.77
55276120--55276571	44	10.3	44	64	12	185	29	23	17	28	1.97
55276009--55276921	132	6.9	132	89	3	1205	29	24	18	28	1.98
55278246--55278283	19	2.0	19	89	0	58	5	10	2	81	0.94
55282284--55282478	98	2.0	98	94	0	345	37	24	9	28	1.87
55283934--55284027	19	4.8	19	89	5	152	37	14	9	38	1.79
55283911--55284026	40	2.8	40	87	7	155	39	13	8	37	1.76
55291497--55291541	20	2.4	19	78	10	56	33	0	13	53	1.40
55295427--55296061	128	5.0	128	91	1	995	25	20	21	32	1.98
55295521--55295878	84	4.2	86	68	14	233	24	21	22	31	1.98
55295427--55296061	255	2.5	255	92	2	1024	25	20	21	32	1.98
55296063--55296223	50	3.2	50	70	3	144	28	19	19	32	1.96
55296068--55296369	100	3.1	97	81	3	300	27	21	18	31	1.97
55296393--55296655	45	5.9	45	78	7	153	28	25	19	27	1.98
55296390--55296834	90	5.0	89	84	4	280	29	24	18	27	1.98
55296505--55296842	90	3.8	90	89	2	502	31	25	16	26	1.96
55296458--55296842	45	8.6	45	81	7	426	30	24	17	26	1.97
55298270--55298309	17	2.4	17	95	4	73	5	7	7	80	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55298247--55298320	22	3.2	22	81	11	69	4	9	5	81	0.98
55298279--55298316	16	2.3	17	86	4	51	5	13	5	76	1.13
55298270--55298317	17	2.8	17	90	6	62	4	10	6	79	1.05
55303915--55303965	26	2.0	25	84	3	66	15	9	1	72	1.19
55309418--55309458	21	1.9	22	90	5	66	58	12	7	21	1.58
55316717--55316762	22	2.1	22	95	0	83	36	15	23	23	1.93
55317525--55317549	7	3.6	7	100	0	50	28	0	0	72	0.86
55318985--55319093	54	2.0	55	92	1	184	33	1	13	51	1.52
55330701--55330748	11	4.4	11	89	0	69	25	35	2	37	1.68
55330710--55330753	11	4.0	11	87	0	52	31	31	0	36	1.58
55331933--55331957	7	3.6	7	100	0	50	28	0	16	56	1.41
55331912--55331957	14	3.3	14	82	14	51	30	0	13	56	1.37
55332598--55332640	18	2.4	18	88	0	59	18	27	9	44	1.80
55334000--55334261	96	2.7	95	85	5	323	39	18	3	38	1.67
55334000--55334305	95	3.2	96	83	4	370	40	17	3	37	1.68
55334753--55334797	19	2.4	18	85	14	56	35	8	2	53	1.45
55335341--55335391	15	3.5	15	81	10	52	50	1	1	45	1.24
55335601--55335635	18	2.0	17	88	5	52	54	0	0	45	0.99
55335705--55335751	15	3.3	15	82	11	55	55	0	0	44	0.99
55335817--55335862	16	2.9	16	78	12	51	52	2	0	45	1.13
55335817--55335871	15	3.7	15	79	13	53	52	1	0	45	1.11
55335339--55335996	120	5.5	120	96	1	1185	49	5	2	42	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55336037--55336097	28	2.2	28	85	5	81	50	3	0	45	1.17
55336012--55336219	91	2.3	91	91	0	335	45	4	3	46	1.39
55336037--55336179	44	3.2	43	70	16	128	47	3	2	46	1.31
55336056--55336200	47	3.1	47	67	14	122	48	4	2	44	1.35
55339222--55339287	33	2.0	33	96	0	123	37	6	13	42	1.69
55339479--55339567	37	2.4	37	94	0	160	33	7	14	43	1.74
55345482--55345527	24	1.9	24	82	8	58	47	0	8	43	1.34
55345498--55345529	16	1.9	17	93	6	57	50	0	6	43	1.27
55345562--55345601	16	2.5	16	91	0	62	42	0	15	42	1.46
55345631--55345707	3	24.7	3	76	15	59	59	2	3	33	1.29
55348733--55348856	48	2.6	48	83	2	142	27	26	16	29	1.97
55352129--55352154	3	8.7	3	100	0	52	34	0	0	65	0.93
55352153--55352196	3	14.7	3	90	0	70	29	34	2	34	1.70
55353686--55353720	13	2.5	15	90	9	56	34	0	0	65	0.93
55353850--55353902	26	2.0	26	82	10	63	49	7	1	41	1.42
55374830--55374881	16	3.2	16	94	0	95	26	0	34	38	1.57
55375097--55375151	15	3.4	16	80	16	53	50	1	0	47	1.11
55375117--55375151	18	2.0	17	88	5	52	54	0	0	45	0.99
55375237--55375271	18	2.0	17	88	5	52	54	0	0	45	0.99
55375132--55375322	61	3.2	60	67	20	155	48	5	2	43	1.38
55375095--55375378	120	2.4	120	90	2	446	48	4	1	44	1.34
55377290--55377326	19	1.9	19	94	0	65	29	18	18	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55378355--55378384	15	2.0	15	93	0	51	50	20	23	6	1.71
55379087--55379342	128	2.0	128	85	1	343	36	16	22	25	1.94
55380191--55380241	23	2.2	23	89	0	75	43	19	9	27	1.82
55380720--55380744	8	3.1	8	100	0	50	24	0	0	76	0.80
55396531--55396578	20	2.5	19	83	6	60	2	18	2	77	0.97
55400858--55400926	29	2.4	29	97	0	129	40	15	13	30	1.86
55403968--55404004	13	2.8	14	80	12	51	43	5	18	32	1.73
55409025--55409065	20	2.0	20	95	0	73	48	12	4	34	1.62
55414648--55414727	39	2.1	39	100	0	160	32	17	17	32	1.93
55418054--55418094	22	1.9	21	85	5	55	14	9	0	75	1.04
55418818--55418856	20	2.0	20	89	0	60	28	0	0	71	0.86
55418819--55418865	20	2.4	20	76	16	53	27	2	0	70	0.99
55425138--55425173	18	2.0	18	94	0	63	41	11	25	22	1.86
55427657--55427858	44	4.6	44	69	9	142	27	21	24	25	1.99
55427652--55427966	132	2.4	132	87	0	450	28	20	24	25	1.99
55427784--55428221	218	2.0	218	90	1	700	28	20	26	25	1.99
55427789--55428282	218	2.3	218	86	3	620	28	20	25	26	1.99
55428236--55428345	44	2.5	44	88	2	159	27	18	27	27	1.98
55428232--55428362	44	3.0	42	77	10	129	29	19	24	27	1.98
55431766--55431820	18	2.9	19	79	15	53	34	1	3	60	1.25
55436616--55436658	21	2.0	22	86	13	63	55	2	0	41	1.12
55440202--55440283	30	2.7	30	80	1	101	48	12	12	26	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55445555--55446988	405	3.6	398	83	5	1672	31	16	24	26	1.97
55452992--55453237	35	7.1	34	72	14	150	46	10	12	30	1.76
55452956--55453336	17	21.5	18	69	14	186	45	10	13	30	1.77
55453777--55453814	16	2.4	16	90	0	58	68	0	0	31	0.90
55453806--55453846	8	5.5	8	80	13	52	73	2	0	24	0.96
55453976--55454039	10	6.9	10	76	16	66	0	15	0	84	0.63
55453978--55454042	17	3.6	17	85	8	85	0	15	0	84	0.62
55453978--55454042	27	2.4	26	90	7	103	0	15	0	84	0.62
55453976--55454038	8	8.0	8	76	16	69	0	15	0	84	0.63
55453977--55454044	29	2.4	27	84	15	93	0	16	0	83	0.64
55453978--55454051	27	2.7	27	85	12	89	0	18	0	81	0.70
55454264--55454307	21	2.2	20	87	4	61	11	31	43	13	1.80
55454336--55454367	15	2.1	16	94	5	57	6	9	0	84	0.78
55454363--55454420	3	20.3	3	79	13	61	0	27	3	68	1.05
55454914--55455089	30	5.9	30	80	4	187	38	3	23	34	1.73
55454913--55455081	59	2.8	59	79	2	187	39	4	24	32	1.74
55455229--55455290	20	3.2	20	79	4	81	9	30	20	38	1.85
55455229--55455281	19	2.7	20	79	5	63	9	32	20	37	1.85
55456583--55456690	23	4.7	23	74	2	101	37	15	18	27	1.91
55461804--55461828	7	3.6	7	100	0	50	32	28	12	28	1.92
55462537--55462569	8	4.2	8	84	7	50	48	3	0	48	1.17
55462537--55462569	15	2.1	16	88	5	50	48	3	0	48	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55477974--55478140	21	8.0	21	68	6	81	46	17	20	14	1.84
55477988--55478145	42	3.8	42	81	5	185	48	17	18	15	1.81
55481484--55481549	33	2.0	34	90	3	107	54	1	0	43	1.09
55484849--55484921	33	2.2	33	78	4	76	56	2	0	41	1.14
55485919--55485947	11	2.6	11	100	0	58	41	10	6	41	1.66
55489020--55489067	18	2.7	18	96	0	87	35	12	12	39	1.81
55489491--55489662	72	2.4	72	85	4	251	26	6	12	54	1.62
55494401--55494441	15	2.8	15	88	3	57	34	7	0	58	1.26
55494551--55494593	13	3.3	13	80	0	50	37	2	4	55	1.33
55501440--55501728	79	3.7	75	71	12	217	46	2	10	41	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221