genome.fa.s26.2.7.7.80.10.50.1000.213.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  213  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62273167--62273194	11	2.5	11	100	0	56	64	7	21	7	1.43
62287161--62287234	37	2.0	37	94	0	130	18	24	8	48	1.75
62287494--62287564	22	3.2	22	63	21	58	40	18	9	30	1.83
62287490--62287577	44	2.0	44	100	0	176	40	18	9	31	1.81
62292337--62292378	20	2.1	20	86	0	57	38	2	7	52	1.42
62316021--62316052	9	3.6	9	100	0	64	12	0	9	78	0.97
62322630--62322669	21	1.9	21	85	10	55	55	20	5	20	1.62
62327183--62327222	21	1.9	21	85	10	55	55	20	5	20	1.62
62341399--62341439	21	2.0	21	90	0	64	29	21	29	19	1.98
62366570--62366612	23	1.9	23	86	13	63	65	0	2	32	1.06
62366921--62366972	6	8.7	6	91	0	86	32	0	17	50	1.47
62375413--62375457	18	2.6	18	83	13	58	33	2	0	64	1.06
62377452--62377512	27	2.3	26	83	11	70	55	3	1	39	1.26
62377843--62377890	22	2.2	22	85	3	62	20	8	2	68	1.26
62378139--62378179	20	2.0	21	85	9	57	53	2	2	41	1.27
62379482--62379518	18	2.1	18	94	0	65	29	10	13	45	1.77
62381263--62381424	50	3.4	50	81	14	214	30	24	12	32	1.92
62381273--62381431	43	3.5	43	88	6	201	31	23	13	31	1.93
62384272--62384564	50	5.8	50	85	0	388	25	22	31	20	1.98
62386692--62387163	237	2.0	237	96	0	865	30	33	6	30	1.83
62386929--62388486	282	5.7	282	81	10	2058	30	31	7	30	1.85
62387211--62388250	519	2.0	521	98	0	1994	30	31	7	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62387493--62387964	237	2.0	237	97	0	890	30	33	6	30	1.82
62387730--62388486	286	2.7	283	97	1	1428	29	31	7	30	1.85
62394418--62394837	208	2.0	207	94	0	732	30	35	16	18	1.93
62396020--62396059	9	4.6	9	84	6	55	22	2	7	67	1.28
62396029--62396062	17	2.0	17	100	0	68	17	5	5	70	1.28
62410025--62410072	24	2.0	24	95	0	87	25	16	18	39	1.91
62419087--62419135	21	2.3	20	80	13	55	65	2	8	24	1.31
62422352--62422376	5	5.0	5	100	0	50	20	0	0	80	0.72
62426418--62426478	28	2.2	28	85	5	79	40	1	13	44	1.53
62427559--62427650	48	1.9	48	84	4	123	22	9	18	48	1.77
62431115--62431160	19	2.5	18	85	3	56	52	6	0	41	1.27
62449085--62449114	3	10.0	3	100	0	60	33	0	0	66	0.92
62454489--62454530	3	14.0	3	85	9	59	0	66	0	33	0.92
62456549--62456582	16	2.1	16	100	0	68	32	5	17	44	1.73
62457351--62457381	6	5.3	6	96	3	55	0	12	87	0	0.55
62464130--62464195	30	2.2	31	86	5	91	43	3	4	48	1.38
62464404--62464437	16	2.1	17	88	5	52	38	11	17	32	1.86
62494352--62494487	60	2.2	62	79	5	152	22	16	17	44	1.87
62495116--62495187	29	2.4	29	77	6	83	26	11	9	52	1.67
62503479--62503545	31	2.1	32	83	2	82	40	11	25	22	1.88
62514183--62514261	4	19.8	4	97	0	149	48	25	0	26	1.52
62518895--62518942	16	3.1	15	87	6	60	64	4	2	29	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62518891--62518942	8	6.5	8	78	8	52	65	3	1	28	1.21
62518890--62518946	24	2.4	24	77	11	64	64	3	3	28	1.26
62519096--62519158	22	2.7	23	85	11	76	52	4	7	34	1.52
62519147--62519227	31	2.6	31	84	5	94	56	3	4	34	1.38
62519262--62519307	25	1.9	25	86	8	69	60	0	4	34	1.16
62519837--62519967	30	4.4	30	96	0	235	19	3	49	27	1.65
62520680--62520854	76	2.3	74	90	3	262	31	23	14	30	1.95
62520682--62521072	210	1.9	205	88	5	597	35	21	13	29	1.92
62520884--62521241	148	2.4	147	82	6	434	36	19	14	30	1.91
62520884--62521223	72	4.5	75	85	5	411	33	20	14	31	1.92
62521241--62521416	71	2.5	70	83	3	203	34	22	14	28	1.93
62521040--62521416	193	1.9	198	82	4	476	34	20	14	30	1.93
62529722--62529769	16	3.1	15	87	6	60	64	4	2	29	1.23
62529718--62529769	8	6.5	8	78	8	52	65	3	1	28	1.21
62529717--62529773	24	2.4	24	77	11	64	64	3	3	28	1.26
62529926--62529988	22	2.7	23	85	11	76	52	4	7	34	1.52
62529977--62530057	31	2.6	31	82	5	85	58	3	4	33	1.37
62529920--62530139	25	9.0	25	68	18	99	55	4	5	34	1.43
62529957--62530064	27	4.1	27	68	10	80	56	3	5	34	1.40
62530625--62530769	30	4.8	30	88	1	186	20	4	48	27	1.67
62534320--62534350	14	2.2	14	94	0	53	38	0	12	48	1.42
62551598--62551640	23	1.9	22	86	13	61	69	11	2	16	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62553322--62553394	38	1.9	38	88	0	110	56	5	28	9	1.54
62557370--62557421	24	2.2	24	82	3	61	57	7	0	34	1.27
62563154--62563302	40	3.8	40	83	4	151	25	28	20	25	1.99
62563175--62563357	79	2.3	79	82	7	201	25	27	22	24	2.00
62563173--62563357	40	4.6	39	81	6	194	25	28	22	24	1.99
62571303--62571358	25	2.2	25	93	0	94	46	1	12	39	1.52
62577881--62577932	27	1.9	27	88	7	79	44	5	25	25	1.76
62584773--62584839	34	1.9	35	87	3	100	32	8	13	44	1.75
62586591--62586788	96	2.1	96	96	0	360	39	14	15	31	1.87
62592547--62592571	5	5.0	5	100	0	50	20	20	20	40	1.92
62594605--62594647	19	2.3	18	84	8	50	53	4	4	37	1.43
62595787--62595849	29	2.2	29	79	0	72	47	15	12	23	1.80
62597539--62597563	7	3.6	7	100	0	50	12	0	0	88	0.53
62597557--62597586	11	2.6	11	94	5	51	36	3	0	60	1.14
62607448--62607496	3	16.3	3	100	0	98	34	0	0	65	0.93
62607732--62607769	14	2.5	15	87	8	51	55	0	5	39	1.23
62623373--62623446	29	2.5	29	82	4	85	25	14	13	45	1.82
62629051--62629142	11	8.3	11	72	21	59	59	0	3	36	1.14
62629058--62629132	29	2.8	28	88	8	102	60	0	2	37	1.11
62629127--62629171	14	2.9	16	78	21	51	57	0	0	42	0.98
62629557--62629602	21	2.1	22	84	8	58	60	8	2	28	1.38
62632075--62632120	12	3.7	12	83	16	58	73	0	26	0	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62632351--62632776	210	2.0	210	99	0	843	45	2	17	34	1.61
62635031--62635073	19	2.3	19	80	8	52	30	11	2	55	1.48
62636383--62636420	19	2.0	20	89	5	60	65	13	0	21	1.26
62639677--62639715	4	9.8	4	94	0	69	46	0	25	28	1.53
62639675--62639750	8	9.5	8	95	0	89	35	0	25	39	1.56
62639705--62639750	4	11.5	4	95	0	83	26	0	26	47	1.52
62639685--62639747	12	5.2	12	94	0	81	34	0	25	39	1.56
62640123--62640319	98	2.0	98	94	0	349	43	10	18	28	1.82
62640340--62640417	31	2.5	31	79	4	95	24	15	17	42	1.88
62640756--62640789	6	5.7	6	89	0	50	64	17	5	11	1.45
62647483--62647783	33	8.5	33	67	22	139	33	26	18	21	1.96
62647523--62647712	102	1.9	102	95	0	344	33	26	17	22	1.96
62647614--62647750	42	3.5	41	71	21	130	35	24	16	23	1.94
62647625--62647784	75	2.1	75	97	0	302	35	26	16	21	1.95
62651321--62651561	121	2.0	121	100	0	482	37	20	14	26	1.92
62659263--62659299	18	2.1	18	94	0	65	62	5	0	32	1.18
62662923--62662996	30	2.5	30	88	0	112	18	6	18	55	1.64
62669839--62669931	42	2.2	41	83	9	109	36	16	18	29	1.92
62671890--62672020	65	2.0	65	100	0	262	39	15	15	29	1.88
62673916--62673968	27	2.0	27	96	0	97	35	11	7	45	1.69
62676216--62676253	20	1.9	20	94	0	67	60	0	10	28	1.30
62676304--62676334	15	2.1	15	93	0	53	38	0	6	54	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62676344--62676391	20	2.4	20	80	10	53	33	6	2	58	1.35
62680042--62680247	43	4.8	42	78	7	193	31	24	16	28	1.96
62680091--62680272	85	2.1	85	89	2	276	32	24	14	28	1.95
62684678--62684711	16	2.1	16	89	10	52	29	0	0	70	0.87
62686673--62686739	31	2.2	31	84	12	86	25	8	13	52	1.69
62692720--62692767	13	3.7	13	80	0	60	31	6	27	35	1.82
62695017--62695048	9	3.6	9	91	0	55	31	6	0	62	1.20
62695017--62695051	18	1.9	18	100	0	70	34	5	0	60	1.21
62698806--62698848	22	2.0	22	86	9	61	37	0	0	62	0.95
62698806--62698848	23	2.0	21	86	9	59	37	0	0	62	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221