genome.fa.s26.2.7.7.80.10.50.1000.220.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  220  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64343032--64343082	25	2.0	25	100	0	102	58	5	11	23	1.55
64343839--64343940	39	2.6	39	85	0	141	34	11	13	40	1.81
64345138--64345197	31	1.9	31	86	6	86	50	6	21	21	1.72
64346175--64346200	2	13.0	2	100	0	52	50	0	0	50	1.00
64351378--64351420	21	2.0	22	86	9	61	30	0	4	65	1.13
64353639--64353676	15	2.4	16	82	4	51	21	2	2	73	1.07
64355139--64355170	6	5.3	6	100	0	64	84	0	15	0	0.63
64356786--64356835	25	2.0	25	84	7	66	58	0	4	38	1.17
64357502--64357552	14	3.0	18	70	24	56	47	5	5	41	1.52
64360181--64360237	30	1.9	30	85	7	80	59	14	3	22	1.50
64361394--64361423	15	2.0	15	93	0	51	63	0	6	30	1.20
64361511--64361541	15	2.1	15	100	0	62	61	0	6	32	1.21
64361835--64361965	3	43.7	3	73	8	97	59	2	9	29	1.40
64361840--64361879	20	2.0	21	85	5	55	57	2	12	27	1.48
64361896--64361977	12	6.9	11	75	8	56	62	1	6	30	1.27
64363162--64363195	16	2.1	16	88	0	50	17	0	17	64	1.29
64363859--64363884	2	13.0	2	100	0	52	50	0	0	50	1.00
64363884--64363924	2	20.5	2	100	0	82	51	0	48	0	1.00
64368357--64368395	3	13.0	3	100	0	78	33	0	0	66	0.92
64373816--64374163	46	7.6	45	82	12	358	28	22	14	34	1.94
64373905--64374023	36	3.0	36	75	21	130	29	21	13	36	1.91
64373859--64374023	82	2.0	82	95	0	294	29	21	13	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64373987--64374157	52	3.2	52	90	1	252	26	23	14	35	1.93
64377910--64378791	30	29.3	30	84	8	1030	12	11	50	25	1.73
64378692--64378756	24	2.6	24	87	7	85	12	7	52	27	1.66
64379675--64379716	20	2.1	21	86	8	61	50	0	14	35	1.43
64379686--64379723	20	1.9	20	88	0	58	50	0	13	36	1.42
64382950--64382989	21	2.0	21	95	5	73	20	0	0	80	0.72
64382951--64382990	14	2.8	14	82	17	55	17	0	0	82	0.67
64384091--64384401	169	1.8	169	90	1	507	23	16	18	41	1.90
64384230--64384833	188	3.1	187	82	11	750	22	17	16	43	1.87
64389862--64389889	4	7.0	4	100	0	56	50	25	0	25	1.50
64390862--64390896	13	2.6	14	90	4	54	54	2	0	42	1.15
64405862--64405909	25	2.0	25	87	4	71	35	14	22	27	1.93
64405945--64406067	64	1.9	63	85	6	167	34	22	20	21	1.96
64410163--64410807	36	17.9	36	82	3	690	27	45	4	22	1.72
64410163--64410807	108	6.0	108	83	2	767	27	45	4	22	1.72
64410378--64410443	21	3.4	21	67	30	65	28	45	3	22	1.67
64410803--64410940	45	3.1	45	92	0	222	28	47	10	13	1.74
64412064--64412106	21	2.0	21	82	8	52	23	9	6	60	1.51
64422242--64422448	35	6.1	35	81	6	237	18	21	17	42	1.90
64422242--64422438	67	2.9	69	85	5	251	18	22	17	40	1.91
64422242--64422448	102	2.0	102	89	0	315	18	21	17	42	1.90
64425248--64425292	20	2.1	22	84	12	58	13	11	8	66	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64433178--64433222	22	2.0	22	100	0	90	8	22	13	55	1.65
64436046--64436732	231	3.0	230	81	6	796	17	27	11	43	1.83
64462409--64462455	22	2.1	22	81	14	53	25	6	4	63	1.36
64469198--64469437	125	1.9	125	88	3	367	33	16	16	33	1.91
64474742--64474788	21	2.2	22	92	3	78	21	38	19	21	1.94
64484537--64484575	21	1.9	20	89	5	60	20	0	35	43	1.52
64487218--64487254	13	2.9	13	88	4	58	54	2	8	35	1.44
64487830--64487919	9	10.0	9	73	13	69	54	6	4	34	1.47
64487830--64488215	27	14.0	27	85	6	370	48	11	2	36	1.53
64487872--64488204	117	2.8	117	95	0	585	48	12	2	36	1.54
64488248--64488301	7	7.1	7	87	8	63	53	16	1	27	1.53
64493802--64493870	21	3.3	21	83	0	84	36	20	40	2	1.67
64493855--64493894	12	3.3	12	92	0	62	42	17	37	2	1.63
64494312--64494703	42	9.4	42	82	7	410	24	20	21	33	1.97
64494419--64494656	81	2.9	77	84	9	253	19	20	22	37	1.94
64494378--64494703	123	2.6	121	84	8	404	22	19	22	34	1.96
64494775--64494817	22	2.0	22	90	0	68	48	27	13	9	1.73
64533923--64534022	30	3.2	31	80	14	107	40	6	5	49	1.49
64547451--64547484	3	11.3	3	100	0	68	32	0	0	67	0.91
64549623--64549663	21	2.0	21	100	0	82	48	19	2	29	1.61
64562263--64562291	7	4.1	7	100	0	58	58	0	13	27	1.36
64562550--64562578	13	2.1	14	93	6	51	68	3	0	27	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64568619--64568697	39	2.0	40	95	2	142	21	5	24	49	1.69
64569262--64569312	25	2.0	25	84	7	66	31	3	1	62	1.24
64579408--64579467	30	2.0	30	100	0	120	30	20	16	33	1.94
64582661--64582715	24	2.5	22	80	14	69	67	0	0	32	0.91
64604191--64604229	5	7.6	5	82	5	51	41	0	17	41	1.50
64604712--64604768	24	2.4	24	82	5	62	15	31	22	29	1.95
64619215--64619258	20	2.1	22	84	16	58	68	9	9	13	1.40
64622061--64622248	32	6.1	32	81	12	216	39	16	23	20	1.91
64622061--64622236	58	2.8	63	79	14	206	39	17	22	19	1.92
64622077--64622245	89	1.9	91	89	7	265	40	17	22	20	1.91
64636562--64636613	26	2.0	26	92	0	86	28	32	23	15	1.95
64636529--64636874	102	3.4	103	88	5	492	31	28	21	18	1.97
64638677--64638760	24	3.5	23	73	10	80	34	20	28	16	1.94
64639306--64639344	5	7.6	5	82	5	51	41	17	0	41	1.50
64667353--64667402	26	1.9	26	91	0	82	30	34	24	12	1.91
64667453--64667504	26	2.0	26	100	0	104	26	34	23	15	1.94
64667320--64667683	102	3.6	102	89	2	527	31	29	20	18	1.96
64667557--64667606	26	1.9	26	95	0	91	30	34	22	14	1.93
64668017--64668074	30	1.9	30	85	0	80	31	24	6	37	1.82
64670771--64670847	38	2.0	38	95	5	138	33	6	31	28	1.83
64702100--64702153	19	2.9	18	81	8	63	53	3	1	40	1.29
64703604--64703670	33	2.0	34	85	2	91	49	1	0	49	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64704291--64704320	15	2.0	15	93	0	51	40	10	20	30	1.85
64705808--64705853	23	2.0	23	82	0	56	30	4	10	54	1.55
64706085--64706121	19	1.9	19	88	0	56	40	2	5	51	1.39
64712221--64712245	12	2.1	12	100	0	50	24	36	24	16	1.94
64712594--64712623	13	2.3	13	94	0	51	20	0	40	40	1.52
64715528--64715584	27	2.1	27	96	0	105	35	14	22	28	1.93
64723464--64723514	26	2.0	26	96	0	93	35	13	15	35	1.87
64723881--64723961	25	3.2	25	76	13	94	29	18	28	23	1.98
64723873--64723975	50	2.0	51	83	5	129	31	19	27	22	1.98
64723995--64724052	27	2.2	25	81	6	71	37	20	18	22	1.94
64725280--64725365	9	9.4	9	85	7	102	22	10	26	40	1.86
64741219--64741280	13	4.8	13	77	0	61	35	25	4	33	1.78
64742283--64742320	18	2.1	18	85	9	51	47	13	5	34	1.65
64750924--64750953	15	2.0	15	93	0	51	50	0	10	40	1.36
64750962--64750992	15	2.1	15	93	0	53	38	19	9	32	1.84
64751555--64751583	15	1.9	15	100	0	58	58	0	6	34	1.25
64761635--64761847	91	2.4	91	80	5	227	30	5	11	52	1.60
64762282--64762343	31	2.0	31	84	6	81	19	6	22	51	1.69
64763211--64763357	78	1.9	78	91	0	240	27	25	22	25	2.00
64772656--64772812	76	2.1	76	100	0	314	17	18	22	41	1.90
64774469--64774534	31	2.1	31	94	0	114	31	18	21	28	1.96
64783517--64783661	22	6.9	21	86	7	179	14	20	30	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64783517--64783658	65	2.2	63	88	6	207	14	21	29	35	1.92
64783535--64783659	43	3.0	42	90	4	182	16	20	30	32	1.94
64783656--64788906	7	744.9	7	91	7	7960	13	0	42	44	1.43
64783691--64783754	5	12.0	5	78	8	56	0	0	50	50	1.00
64783931--64783957	1	27.0	1	100	0	54	0	0	100	0	0.00
64803287--64803325	20	2.0	20	85	14	55	35	2	0	61	1.10
64817878--64817915	17	2.2	18	86	9	53	31	10	2	55	1.48
64823198--64823273	40	1.9	40	97	0	143	51	10	2	35	1.50
64823215--64823535	175	1.8	174	80	6	380	49	12	6	31	1.66
64823390--64823606	90	2.4	90	82	4	253	50	11	6	32	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221