genome.fa.s26.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  116  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35664844--35664888	20	2.2	21	84	7	58	71	6	0	22	1.09
35690130--35690207	36	2.1	37	88	2	113	25	29	17	26	1.98
35690250--35690582	47	7.0	47	89	5	490	28	30	9	31	1.88
35698638--35698763	39	3.2	39	86	2	155	22	23	30	24	1.99
35700655--35701010	130	2.8	128	89	4	537	54	4	4	36	1.42
35703244--35703285	21	2.0	22	85	4	59	50	2	21	26	1.61
35703271--35703321	11	4.7	10	88	9	66	39	0	33	27	1.57
35703678--35703734	27	2.1	27	100	0	114	43	7	3	45	1.48
35709374--35709602	27	8.5	27	83	4	257	31	27	14	26	1.95
35709374--35709602	107	2.1	107	83	3	280	31	27	14	26	1.95
35717261--35717410	26	5.6	27	89	7	207	31	28	14	25	1.95
35717261--35717410	27	5.5	28	89	8	213	31	28	14	25	1.95
35717260--35717410	82	1.9	81	86	6	216	31	29	14	25	1.95
35725175--35725354	28	6.6	27	93	2	279	31	28	13	26	1.94
35725175--35725354	55	3.3	55	94	1	299	31	28	13	26	1.94
35725175--35725354	83	2.2	82	92	1	297	31	28	13	26	1.94
35734677--35734796	62	1.9	62	84	3	161	43	5	3	48	1.41
35735706--35735743	19	2.0	19	85	10	51	28	0	0	71	0.87
35745518--35745560	21	2.0	23	90	9	72	27	0	4	67	1.10
35745523--35745581	21	2.7	22	82	12	61	30	0	3	66	1.08
35746718--35746850	50	2.7	50	84	2	133	43	10	12	33	1.76
35746860--35746923	32	2.0	33	90	3	103	54	10	7	26	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35747758--35747800	13	3.3	12	76	17	50	48	9	0	41	1.35
35756372--35756425	19	2.8	20	88	2	74	46	12	11	29	1.77
35758519--35758577	20	3.0	20	82	5	66	44	10	11	33	1.75
35762980--35763014	16	2.2	16	89	0	52	77	0	0	22	0.78
35766066--35766106	21	2.0	21	90	0	64	29	14	2	53	1.54
35767537--35767603	27	2.5	27	88	7	93	31	14	10	43	1.80
35767747--35767773	6	4.5	6	100	0	54	14	29	0	55	1.40
35772590--35772620	15	2.0	16	93	6	55	41	19	0	38	1.51
35772616--35772655	14	2.8	14	88	3	53	22	17	2	57	1.52
35773016--35773118	43	2.4	43	86	1	152	27	25	21	26	1.99
35773016--35773162	43	3.4	42	79	10	111	27	25	19	26	1.99
35773549--35773725	87	2.0	87	90	2	275	12	31	16	38	1.87
35773635--35773685	21	2.4	21	90	0	75	3	47	15	33	1.64
35777277--35777372	31	3.1	31	95	3	174	45	13	9	31	1.75
35783449--35783544	31	3.1	31	95	3	174	45	13	9	31	1.75
35786162--35786365	16	13.1	15	70	20	77	30	0	18	50	1.54
35786162--35786276	41	2.8	40	83	7	142	27	0	20	50	1.54
35786221--35786277	9	6.8	9	76	15	50	28	0	19	52	1.46
35786259--35786463	21	9.8	21	70	20	110	33	0	15	50	1.48
35786243--35786430	58	3.0	58	75	17	160	32	0	14	51	1.47
35786254--35786450	44	4.5	44	78	11	215	32	0	15	51	1.47
35786510--35786741	125	1.9	122	83	8	306	47	4	6	41	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35786737--35786825	18	4.8	18	81	14	110	42	0	12	44	1.42
35786729--35786872	39	3.8	37	81	12	150	43	1	11	43	1.49
35786739--35786790	22	2.4	22	78	12	61	44	0	13	42	1.44
35786720--35786872	57	2.8	52	72	20	130	43	1	11	43	1.48
35787558--35787590	13	2.5	14	85	14	52	63	12	15	9	1.51
35788255--35789578	337	3.9	336	91	1	2078	33	18	16	31	1.94
35788255--35789579	673	2.0	673	91	1	2136	33	18	16	31	1.94
35790970--35791081	40	2.8	41	79	2	109	35	30	20	13	1.91
35791187--35791295	40	2.8	39	78	8	114	24	22	18	34	1.96
35800327--35800373	5	9.2	5	83	4	58	42	0	14	42	1.46
35800327--35800367	21	2.0	21	90	0	64	41	0	17	41	1.49
35800905--35800958	24	2.2	24	83	0	63	14	24	25	35	1.94
35802956--35803002	21	2.1	23	84	7	62	42	4	0	53	1.20
35810086--35810123	19	2.0	19	100	0	76	26	31	26	15	1.96
35811477--35811519	22	1.9	23	90	4	70	23	4	6	65	1.37
35815000--35815094	30	3.2	28	82	11	118	69	0	1	29	0.95
35815627--35815651	8	3.1	8	100	0	50	64	0	0	36	0.94
35817701--35817751	26	2.0	28	81	14	65	31	9	3	54	1.51
35821575--35821613	16	2.5	15	87	4	51	23	0	28	48	1.51
35821646--35821743	35	2.7	35	87	6	124	29	4	21	44	1.70
35827540--35827569	15	1.9	16	93	6	53	83	0	16	0	0.65
35832562--35832592	15	2.1	15	93	0	53	54	0	3	41	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35836375--35836696	109	3.0	105	85	6	421	35	18	16	29	1.93
35836723--35836767	21	2.2	20	84	11	56	53	2	15	28	1.54
35837333--35837369	3	12.0	3	88	5	56	62	0	2	35	1.10
35837591--35837697	53	2.0	53	98	0	205	37	22	30	9	1.86
35837858--35837894	2	18.5	2	100	0	74	0	51	0	48	1.00
35839443--35839484	21	2.0	22	85	4	59	64	4	7	23	1.38
35839487--35839590	37	3.0	33	76	18	95	67	1	4	25	1.21
35839501--35839584	27	3.2	26	77	12	73	69	1	5	23	1.18
35839547--35839623	16	4.8	16	69	13	50	66	1	5	27	1.21
35839960--35840021	24	2.5	26	80	10	69	27	6	0	66	1.16
35840000--35840033	15	2.3	15	89	0	50	29	0	0	70	0.87
35840146--35840194	17	3.1	16	80	13	57	24	0	2	73	0.94
35848962--35849009	24	2.0	24	95	0	87	25	18	25	31	1.98
35848957--35849111	63	2.5	63	77	4	186	25	17	23	33	1.96
35866715--35866768	28	2.0	26	89	7	81	62	20	1	14	1.40
35868496--35868568	26	2.9	25	68	11	67	42	12	16	28	1.84
35868735--35868827	28	3.2	28	64	21	73	34	20	29	16	1.94
35868718--35868840	60	2.0	60	100	0	246	33	22	24	19	1.97
35870313--35870345	7	4.6	7	92	7	57	72	0	0	27	0.85
35870313--35870343	15	2.1	15	100	0	62	74	0	0	25	0.82
35871196--35871257	24	2.6	24	86	0	79	35	24	4	35	1.77
35872035--35872059	12	2.1	12	100	0	50	44	0	8	48	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35879803--35879849	2	23.5	2	86	0	58	42	2	51	4	1.33
35879803--35879849	18	2.6	18	89	0	67	42	2	51	4	1.33
35880646--35880698	20	2.7	20	82	8	65	45	11	22	20	1.83
35884761--35884822	16	3.9	16	70	8	54	45	1	3	50	1.27
35884929--35884976	25	1.9	25	87	8	71	41	8	8	41	1.65
35888399--35888462	20	3.2	19	78	8	74	9	26	21	42	1.83
35890807--35890838	13	2.4	14	85	15	50	53	18	15	12	1.73
35893058--35893708	327	2.0	327	92	0	1086	32	23	18	25	1.97
35893982--35894101	62	1.9	62	93	0	204	25	29	21	23	1.99
35896550--35896660	25	4.4	25	90	0	168	40	36	7	16	1.76
35901871--35902023	28	5.5	28	92	2	238	26	14	28	30	1.95
35901871--35902023	55	2.8	55	91	1	243	26	14	28	30	1.95
35910043--35910195	28	5.5	28	92	2	238	26	14	28	30	1.95
35910043--35910195	55	2.8	55	91	1	243	26	14	28	30	1.95
35924384--35924567	70	2.7	69	85	2	244	34	22	16	26	1.95
35924601--35924776	58	3.1	56	78	8	176	38	18	13	29	1.89
35926387--35926418	16	2.0	16	93	0	55	40	6	9	43	1.62
35926640--35926886	51	4.9	49	78	8	230	25	16	27	31	1.96
35926637--35926886	102	2.5	100	80	7	290	25	16	27	31	1.96
35927104--35927135	16	2.0	16	100	0	64	62	0	12	25	1.30
35933498--35933522	5	5.0	5	100	0	50	0	20	0	80	0.72
35934062--35934098	19	1.9	19	88	0	56	64	2	0	32	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35941752--35941789	15	2.5	16	83	12	53	52	2	0	44	1.14
35941940--35942030	7	12.9	7	92	2	155	54	0	15	29	1.41
35941931--35942073	14	10.1	14	84	4	81	45	0	24	29	1.58
35942026--35942073	7	6.9	7	83	9	62	31	2	35	31	1.70
35942385--35942515	10	13.7	9	68	18	61	29	1	2	66	1.13
35942386--35942454	19	3.7	19	72	14	63	27	1	1	69	1.05
35942383--35942468	29	3.0	27	75	11	82	26	1	2	69	1.07
35942385--35942516	48	2.7	48	76	10	135	30	1	2	65	1.13
35943614--35943666	16	3.3	16	81	5	63	60	13	5	20	1.53
35953262--35953818	166	3.4	165	86	2	740	31	22	20	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221