genome.fa.s26.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  143  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43796821--43796883	12	5.4	12	71	19	53	50	1	6	41	1.37
43796841--43796894	26	2.1	26	82	6	65	46	3	9	40	1.54
43798948--43799101	44	3.5	44	75	10	118	30	22	18	29	1.97
43798985--43799159	44	4.0	44	76	5	147	28	22	18	30	1.97
43799194--43799547	100	3.5	99	85	1	465	28	18	21	31	1.97
43799194--43799547	50	7.1	50	74	2	280	28	18	21	31	1.97
43799621--43799677	24	2.4	24	87	0	78	31	26	12	29	1.92
43805611--43805704	26	3.6	25	74	16	75	47	2	7	42	1.43
43806765--43806811	19	2.5	19	73	10	51	23	8	2	65	1.31
43818706--43818818	12	9.8	12	68	20	55	39	1	4	53	1.31
43818724--43818853	68	1.9	67	87	4	170	40	2	3	53	1.29
43818792--43818902	51	2.2	49	82	6	125	42	3	1	52	1.29
43822252--43823399	413	2.8	409	78	6	1066	32	14	14	38	1.86
43829042--43829085	19	2.3	19	88	0	61	56	27	2	13	1.49
43831712--43832109	91	4.4	90	91	5	620	49	10	10	30	1.70
43831707--43832096	186	2.1	186	93	3	664	49	10	10	30	1.69
43832299--43832344	22	2.2	20	82	14	58	30	8	2	58	1.40
43832306--43832356	22	2.3	22	100	0	102	27	7	3	60	1.42
43832422--43832473	17	3.1	17	91	0	86	38	9	1	50	1.46
43832863--43832924	19	3.2	19	71	13	63	51	14	14	19	1.76
43833262--43833329	16	4.2	16	92	0	109	29	0	35	35	1.58
43833310--43833400	45	2.0	44	85	2	119	30	5	28	35	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43833545--43833586	15	2.7	16	82	14	52	52	2	0	45	1.13
43833554--43833595	15	2.9	15	82	10	52	52	0	0	47	1.00
43833574--43833767	61	3.2	61	69	13	193	48	6	1	43	1.37
43833543--43833800	120	2.1	120	96	0	471	48	5	1	43	1.38
43833660--43833706	16	3.0	16	78	12	53	51	2	0	46	1.13
43840041--43840086	24	1.9	24	86	0	65	41	4	0	54	1.20
43842770--43842862	44	2.1	44	100	0	186	41	13	18	25	1.88
43864827--43865265	89	4.9	89	82	1	495	28	22	23	24	1.99
43864923--43865046	44	2.8	44	69	15	110	29	19	25	25	1.99
43865072--43865207	44	3.1	43	69	10	121	27	26	25	20	1.99
43865286--43865478	50	3.9	50	76	4	192	28	19	24	26	1.99
43865295--43865491	100	2.0	100	86	0	277	28	20	23	27	1.99
43865291--43865502	50	4.2	49	75	7	167	29	19	23	27	1.98
43865612--43865722	44	2.5	44	83	1	132	27	18	29	23	1.98
43865651--43865758	44	2.5	44	84	6	130	29	20	23	26	1.99
43866131--43866164	6	5.7	6	100	0	68	85	0	0	14	0.60
43867796--43867883	26	3.4	26	96	0	158	19	27	29	23	1.98
43869657--43869704	19	2.5	19	89	3	69	68	2	0	29	1.01
43870796--43870825	8	3.8	8	100	0	60	10	23	26	40	1.86
43873626--43873884	73	3.5	73	98	0	500	40	24	6	28	1.79
43873885--43873928	3	14.7	3	100	0	88	68	0	0	31	0.90
43878145--43878403	73	3.5	73	97	0	491	41	24	6	27	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43882981--43883023	20	2.2	20	87	8	61	48	0	0	51	1.00
43891843--43891901	31	1.9	31	100	0	118	35	11	28	23	1.91
43897425--43897502	19	3.8	20	77	14	70	60	2	0	37	1.11
43897456--43897504	24	2.0	25	92	4	82	53	2	0	44	1.12
43902037--43902115	37	2.1	37	85	0	104	27	31	16	24	1.96
43902234--43902872	96	6.7	96	93	2	1051	30	29	8	32	1.86
43902234--43902872	47	13.4	49	93	3	1058	30	29	8	32	1.86
43902843--43902901	29	2.0	29	100	0	118	30	25	13	30	1.94
43902747--43902996	125	2.0	126	97	1	475	30	27	9	32	1.89
43902797--43902950	78	2.0	76	97	2	290	30	27	10	31	1.90
43902872--43903003	49	2.7	49	97	2	250	29	28	9	32	1.88
43906715--43906739	13	1.9	13	100	0	50	8	0	24	68	1.16
43907713--43907957	114	2.1	114	90	3	404	40	3	14	41	1.62
43907971--43908151	86	2.2	82	78	15	185	38	2	17	41	1.62
43908425--43908571	41	3.6	41	89	1	215	27	18	29	24	1.98
43912531--43912581	14	3.6	14	75	15	59	31	0	11	56	1.35
43912520--43912591	29	2.5	29	88	0	117	30	5	11	52	1.59
43927539--43927593	22	2.5	22	79	8	58	23	7	12	56	1.61
43930472--43930518	21	2.2	21	92	0	76	57	0	0	42	0.98
43930513--43930566	19	2.7	20	80	11	65	62	0	9	27	1.25
43930821--43930891	29	2.5	28	80	11	83	28	2	2	66	1.20
43930881--43930951	9	7.9	9	71	22	60	32	0	2	64	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43931746--43931779	18	1.9	18	88	5	52	23	8	11	55	1.63
43931896--43931945	23	2.2	23	85	0	64	66	0	0	34	0.92
43932419--43932485	34	1.9	35	90	3	109	32	8	13	44	1.75
43944902--43944935	12	2.8	12	90	0	50	50	5	11	32	1.63
43946256--43946309	23	2.4	23	75	3	56	77	0	9	12	0.98
43952554--43952611	11	4.9	12	83	10	75	74	3	6	15	1.17
43959761--43959787	4	6.8	4	100	0	54	77	0	0	22	0.76
43961142--43961193	23	2.3	22	75	21	54	9	23	1	65	1.32
43965156--43965287	12	10.6	12	68	16	63	46	9	13	30	1.74
43966915--43966939	10	2.5	10	100	0	50	60	28	0	12	1.32
43968842--43968880	15	2.8	14	81	11	53	5	15	2	76	1.06
43975890--43975969	23	3.3	23	80	13	106	30	25	21	23	1.99
43975895--43975969	27	3.0	25	83	12	109	30	24	21	24	1.99
43976094--43976131	17	2.2	17	86	9	51	42	21	2	34	1.67
43984288--43984312	5	5.0	5	100	0	50	80	0	0	20	0.72
43987017--43987046	15	2.0	15	100	0	60	53	0	0	46	1.00
43996155--43996209	17	3.2	17	77	10	58	27	29	21	21	1.99
44008156--44008202	18	2.5	19	76	16	53	57	2	2	38	1.23
44012067--44012152	43	2.0	43	95	0	154	45	19	10	24	1.82
44013201--44013254	27	2.1	26	83	13	67	57	0	3	38	1.17
44016838--44016873	16	2.2	17	90	5	56	36	0	52	11	1.37
44019820--44019855	17	2.1	17	89	0	54	33	8	5	52	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44020223--44020262	20	2.1	19	85	4	53	32	2	7	57	1.40
44024156--44024202	21	2.2	22	92	3	78	21	38	19	21	1.94
44028192--44028237	23	2.0	23	87	4	67	39	6	17	36	1.76
44034393--44035026	45	14.2	45	79	5	651	29	17	24	29	1.97
44035126--44035236	44	2.5	44	83	2	143	27	18	27	27	1.98
44035416--44035624	44	4.8	44	69	10	122	28	19	26	25	1.99
44035456--44035662	44	4.7	44	70	12	122	28	20	26	24	1.99
44035416--44035805	131	3.0	131	92	0	627	28	20	25	25	1.99
44036263--44036364	22	4.7	22	90	4	147	38	8	18	34	1.82
44037003--44037078	32	2.4	32	78	4	84	42	7	1	48	1.40
44038517--44038561	24	1.9	23	86	4	63	71	2	2	24	1.09
44057940--44057975	16	2.1	18	90	10	58	22	2	2	72	1.11
44058917--44058953	12	3.1	13	81	18	53	78	8	0	13	0.96
44059073--44059134	30	2.1	30	87	6	90	22	25	30	20	1.98
44069599--44069662	24	2.7	24	90	0	92	39	4	7	48	1.53
44070032--44070101	35	2.1	35	83	5	90	47	5	5	41	1.51
44078095--44078762	27	25.1	27	83	3	748	38	22	20	19	1.94
44078251--44078290	20	2.0	20	95	0	71	40	22	20	17	1.92
44078271--44078763	80	6.1	81	85	2	573	37	22	20	19	1.94
44079159--44079248	28	3.2	28	90	1	146	25	21	20	33	1.97
44086406--44086442	16	2.2	17	90	4	58	40	8	0	51	1.32
44089061--44089136	30	2.5	30	86	0	98	34	28	13	23	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44093014--44093059	3	16.0	3	84	8	60	63	0	36	0	0.95
44093014--44093053	14	2.9	14	96	0	71	62	0	37	0	0.95
44094334--44094638	149	2.0	149	96	0	565	30	17	18	33	1.94
44112214--44112264	25	2.0	25	92	0	84	52	19	27	0	1.46
44113805--44113910	33	3.2	33	75	7	99	30	29	14	26	1.95
44116166--44116202	18	2.0	19	89	5	58	54	0	40	5	1.24
44116586--44116630	22	2.0	22	83	8	56	53	0	2	44	1.13
44120380--44120442	30	2.1	31	85	8	85	50	9	7	31	1.64
44124594--44124750	79	2.0	79	96	0	287	35	7	20	36	1.81
44133946--44134203	40	6.5	40	82	6	258	25	26	21	26	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221