genome.fa.s26.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  106  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32605102--32605135	18	1.9	17	88	5	50	44	0	0	55	0.99
32605089--32605362	147	1.9	148	94	2	489	47	2	4	45	1.36
32605248--32605282	18	2.0	17	88	5	52	45	0	0	54	0.99
32605443--32605537	45	2.1	44	84	1	118	34	25	5	34	1.78
32605518--32605569	16	3.2	16	91	0	77	36	34	0	28	1.58
32606114--32606161	23	2.1	22	84	3	60	33	0	14	52	1.42
32613881--32613953	37	1.9	38	86	2	103	30	13	17	38	1.89
32615778--32615806	15	1.9	15	100	0	58	37	27	6	27	1.82
32617027--32617116	46	2.0	46	97	0	171	41	4	15	38	1.67
32617603--32617691	44	2.0	44	100	0	178	24	8	31	34	1.87
32643203--32643320	27	4.4	27	77	6	105	24	19	30	25	1.98
32643181--32643306	54	2.3	54	77	0	135	23	21	26	27	1.99
32644030--32644117	44	2.0	44	100	0	176	31	20	15	31	1.94
32654173--32654294	44	2.5	50	74	16	130	49	1	4	45	1.31
32654193--32654237	15	2.9	15	86	6	54	60	0	2	37	1.09
32654321--32654358	12	3.2	12	85	7	51	31	7	10	50	1.66
32660725--32660810	39	2.2	39	97	0	163	23	18	13	44	1.86
32661806--32661847	21	2.0	21	86	9	59	47	4	26	21	1.70
32661971--32662111	41	3.5	40	78	9	124	27	14	21	36	1.93
32661993--32662194	82	2.5	82	82	0	251	26	18	17	37	1.93
32661994--32662200	41	5.1	40	78	4	189	25	19	18	36	1.94
32673948--32674022	33	2.4	32	80	8	91	28	4	1	66	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32690525--32690942	157	2.7	157	84	5	571	41	5	10	42	1.62
32690919--32690962	22	2.0	21	91	4	70	36	2	9	52	1.46
32690919--32690962	21	2.0	22	87	12	65	36	2	9	52	1.46
32694056--32694088	16	2.1	16	94	5	59	0	18	0	81	0.68
32694056--32694101	14	3.0	15	84	12	58	4	21	0	73	1.00
32694062--32694101	16	2.4	16	87	4	53	5	22	0	72	1.04
32698672--32698704	15	2.1	16	94	5	59	30	0	12	57	1.35
32718328--32718395	32	2.1	32	97	0	127	35	27	2	33	1.72
32724701--32724730	8	3.6	8	95	4	51	23	0	0	76	0.78
32725899--32725941	22	2.0	22	95	0	77	69	0	20	9	1.15
32728605--32728659	10	5.8	10	81	12	55	36	3	1	58	1.26
32728607--32728645	9	4.3	9	87	6	53	38	0	2	58	1.12
32728789--32728819	9	3.4	9	95	0	53	38	0	3	58	1.15
32736426--32736595	40	4.3	40	84	1	198	24	21	29	24	1.99
32736448--32736630	79	2.3	80	80	1	199	25	21	28	24	1.99
32744342--32744511	40	4.3	40	84	1	198	24	21	29	24	1.99
32744364--32744546	79	2.3	80	80	1	199	25	21	28	24	1.99
32747034--32747538	44	10.8	44	65	20	159	28	20	18	32	1.96
32746983--32747541	142	3.9	142	91	0	929	28	20	17	32	1.96
32747468--32747597	44	3.0	43	81	8	122	23	22	20	33	1.97
32747593--32748065	131	3.6	131	90	0	741	23	25	22	28	1.99
32749311--32749360	8	6.7	7	84	6	55	12	10	0	78	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32749309--32749359	14	3.5	15	82	17	63	13	11	0	74	1.07
32749309--32749360	15	3.5	16	82	15	67	13	11	0	75	1.06
32750229--32750300	22	3.2	22	88	5	92	11	5	12	70	1.31
32750229--32750290	6	10.7	6	84	10	67	12	6	11	69	1.36
32760763--32760825	17	3.5	17	69	12	54	34	3	12	49	1.57
32760760--32760834	37	2.0	37	94	0	114	36	4	14	45	1.64
32763262--32763738	231	2.1	231	87	1	688	33	20	14	31	1.92
32764163--32764244	32	2.5	33	90	2	130	46	18	6	29	1.73
32786093--32786119	3	9.0	3	100	0	54	66	0	0	33	0.92
32786153--32786223	36	1.9	38	83	11	94	63	2	4	29	1.27
32786278--32786316	12	3.2	12	85	3	51	58	5	7	28	1.47
32788328--32788457	43	3.0	41	78	14	147	21	18	30	30	1.97
32789101--32789135	15	2.3	15	90	9	54	25	0	22	51	1.48
32789473--32789513	21	2.0	21	90	0	64	24	7	17	51	1.70
32789495--32789883	47	8.4	47	93	1	619	32	11	14	41	1.82
32789495--32789883	93	4.2	94	92	2	619	32	11	14	41	1.82
32789495--32789883	140	2.8	140	92	1	642	32	11	14	41	1.82
32789903--32789954	23	2.3	23	93	0	86	28	17	15	38	1.90
32789903--32790011	23	4.7	23	75	8	76	29	12	19	38	1.89
32796628--32796662	15	2.3	15	90	9	54	25	0	22	51	1.48
32797019--32797499	47	10.4	47	89	3	735	32	9	14	42	1.79
32797019--32797499	138	3.5	139	92	1	790	32	9	14	42	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32797017--32797499	185	2.6	185	89	3	760	32	9	14	42	1.79
32797009--32797499	92	5.3	91	88	4	693	32	9	14	42	1.79
32797518--32797569	23	2.3	23	93	0	86	28	17	15	38	1.90
32797953--32798522	44	12.7	44	72	11	356	26	22	19	31	1.98
32798356--32798531	45	3.8	47	77	8	155	25	23	21	29	1.99
32798548--32799135	50	11.8	50	76	1	550	27	20	20	31	1.98
32798553--32799134	100	5.8	100	89	0	869	26	20	20	31	1.98
32801112--32801231	51	2.6	44	80	16	159	30	15	25	29	1.96
32801119--32801345	50	4.4	50	89	8	328	33	13	24	28	1.93
32803262--32803304	5	8.4	5	87	12	61	0	18	0	81	0.69
32803265--32803301	11	3.4	11	88	11	58	0	18	0	81	0.70
32803258--32803304	16	3.0	16	90	3	78	0	21	0	78	0.75
32806831--32806869	15	2.6	15	91	0	60	25	5	25	43	1.75
32807410--32807457	17	2.8	16	81	12	51	22	2	2	72	1.05
32808926--32808950	13	1.9	13	100	0	50	32	28	16	24	1.96
32810817--32810860	22	2.0	22	100	0	88	13	9	22	54	1.67
32815070--32815102	17	1.9	17	88	11	50	69	0	27	3	1.03
32815718--32815789	32	2.2	32	85	7	101	13	31	1	52	1.49
32815843--32815882	21	1.9	21	84	0	53	27	30	17	25	1.97
32815968--32816025	20	2.9	20	89	0	89	31	1	32	34	1.68
32817447--32817489	18	2.4	18	96	0	77	34	6	18	39	1.78
32817697--32817755	22	2.8	20	73	14	55	38	0	1	59	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32821771--32821810	21	1.9	21	85	10	55	35	20	0	45	1.51
32831710--32831772	24	2.6	24	77	5	65	15	38	7	38	1.77
32834642--32834674	10	3.4	10	83	8	50	30	0	0	69	0.88
32834638--32834674	19	2.1	18	90	10	58	27	0	0	72	0.84
32837900--32838079	74	2.4	74	93	1	308	27	24	15	32	1.95
32839550--32839616	32	2.1	32	83	5	82	14	17	38	28	1.90
32841752--32841822	20	3.6	19	75	9	70	29	2	1	66	1.15
32841723--32841841	36	3.2	36	79	12	125	31	4	1	63	1.23
32841752--32841855	10	10.8	10	71	12	58	31	2	0	64	1.15
32841744--32841854	36	3.0	36	76	14	111	31	2	0	64	1.13
32841751--32841853	18	5.5	19	69	14	54	31	2	0	65	1.14
32841790--32841853	18	3.4	18	77	12	67	29	1	0	68	0.99
32841854--32842030	87	2.0	87	87	7	254	35	7	21	36	1.81
32843776--32843834	26	2.2	27	88	8	86	61	0	1	37	1.07
32844913--32844981	34	2.0	34	88	5	104	53	17	4	24	1.62
32845541--32845578	16	2.4	16	95	0	67	36	2	34	26	1.71
32845792--32846269	120	4.0	120	97	1	890	52	3	0	43	1.26
32846116--32846159	21	2.1	21	83	8	54	56	6	0	36	1.26
32846441--32846468	9	3.1	9	100	0	56	42	14	10	32	1.80
32847671--32847774	49	2.1	49	92	0	172	50	9	7	31	1.63
32850121--32850150	14	2.1	14	100	0	60	73	0	0	26	0.84
32850403--32850476	36	2.1	36	84	5	96	45	17	5	31	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32852426--32852459	16	2.1	16	88	0	50	50	14	17	17	1.79
32857204--32857237	16	2.1	16	88	0	50	50	14	17	17	1.79
32859637--32859800	70	2.3	69	83	10	199	29	18	21	29	1.97
32863072--32863107	17	2.1	17	94	0	63	77	5	2	13	1.05
32864206--32864248	14	3.1	14	86	3	52	74	4	18	2	1.10
32864211--32864249	14	2.9	14	88	3	53	74	2	23	0	0.94
32864475--32864499	12	2.1	12	100	0	50	56	0	8	36	1.29
32866180--32866219	21	1.9	21	84	0	53	17	5	25	52	1.64
32872435--32872476	21	2.0	21	100	0	84	19	33	4	42	1.72
32873010--32873035	13	2.0	13	100	0	52	46	0	30	23	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221