genome.fa.s26.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  135  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41542142--41542628	129	3.8	129	81	5	506	26	22	28	22	1.99
41554640--41554672	11	3.1	11	91	4	50	42	0	0	57	0.98
41570439--41570474	15	2.5	14	86	8	54	44	8	0	47	1.33
41576900--41576950	5	10.0	5	79	12	59	19	5	0	74	1.02
41577112--41577171	22	2.8	21	79	5	66	28	48	6	16	1.71
41582504--41582559	29	1.9	29	82	7	69	51	14	5	28	1.64
41587752--41587922	27	6.4	27	85	6	224	18	18	20	42	1.90
41587752--41587898	53	2.7	54	93	2	251	19	19	19	42	1.89
41587752--41587922	80	2.1	80	88	4	247	18	18	20	42	1.90
41587752--41587922	53	3.2	52	89	5	245	18	18	20	42	1.90
41598781--41598851	28	2.5	28	90	0	115	35	12	25	26	1.92
41600887--41600965	37	2.1	37	86	4	106	26	29	17	26	1.98
41601084--41601509	47	8.9	47	92	2	690	29	30	8	32	1.87
41601084--41601509	96	4.5	94	93	1	690	29	30	8	32	1.87
41601084--41601509	143	3.0	143	94	2	730	29	30	8	32	1.87
41604392--41604518	23	5.5	22	75	14	94	25	14	17	41	1.88
41604390--41604527	71	2.0	71	89	1	215	26	13	18	42	1.87
41604416--41604560	71	2.1	70	80	1	155	26	12	20	41	1.87
41605105--41605289	41	4.5	41	71	9	117	25	18	27	28	1.98
41609089--41609256	87	1.9	87	90	2	266	42	15	26	15	1.86
41609581--41609683	43	2.4	43	95	0	179	29	18	29	23	1.98
41612589--41612676	39	2.3	39	95	0	158	35	26	4	34	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41613352--41613430	28	2.8	29	76	3	88	35	26	15	22	1.94
41634923--41635073	43	3.5	43	76	16	134	24	18	27	29	1.98
41634964--41635072	42	2.6	42	81	12	125	25	18	25	30	1.98
41638296--41638347	18	2.8	18	85	5	59	38	21	19	21	1.94
41638516--41638568	18	2.9	18	85	2	70	41	47	1	9	1.47
41639092--41639143	20	2.8	18	78	21	63	44	0	3	51	1.19
41639051--41639185	69	2.0	68	83	4	173	42	3	4	49	1.40
41639363--41639436	36	2.0	37	97	2	141	37	13	13	35	1.84
41644567--41644785	26	8.4	26	82	2	201	19	10	25	43	1.84
41646129--41646160	16	2.0	16	100	0	64	43	12	18	25	1.85
41661147--41661258	11	9.8	11	68	24	56	41	2	1	53	1.25
41661194--41661252	20	2.9	20	80	16	68	42	1	1	54	1.20
41668848--41668944	17	5.7	17	68	22	60	39	2	5	53	1.35
41668918--41669034	62	1.9	59	89	5	180	42	5	3	48	1.42
41672465--41672513	13	3.6	14	78	15	59	71	0	2	26	0.97
41675101--41675180	38	2.1	39	92	2	135	50	26	2	21	1.61
41675382--41675412	9	3.4	9	95	0	53	25	9	22	41	1.84
41676133--41676189	21	2.7	21	81	8	62	31	22	21	24	1.98
41682407--41682689	106	2.7	107	81	1	345	38	20	9	31	1.85
41695153--41695198	21	2.2	21	92	0	74	23	19	4	52	1.64
41701762--41701799	16	2.2	18	86	9	53	50	2	21	26	1.62
41703907--41703943	5	7.4	5	87	0	56	72	0	2	24	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41721486--41721680	44	4.5	44	80	5	191	30	21	19	28	1.98
41721447--41721680	129	1.8	129	85	1	335	31	21	17	29	1.96
41722549--41722578	16	1.9	16	93	6	53	26	6	16	50	1.70
41726690--41726717	14	2.0	14	100	0	56	21	7	14	57	1.61
41733901--41733946	6	7.7	6	95	0	83	67	15	2	15	1.33
41733919--41734012	45	2.1	46	84	9	122	71	6	11	10	1.31
41734930--41734969	12	3.1	13	85	7	55	62	0	22	15	1.32
41734930--41734964	6	5.7	6	86	6	52	65	0	20	14	1.26
41736184--41736350	85	2.0	85	90	2	264	28	22	23	24	1.99
41736176--41736390	86	2.5	85	84	6	283	29	22	23	24	1.99
41736573--41736682	44	2.5	44	82	4	123	27	15	22	34	1.94
41736977--41737007	16	1.9	16	93	0	53	67	12	0	19	1.22
41742932--41742983	11	4.8	11	73	4	52	59	1	0	38	1.08
41742925--41743013	32	2.9	31	81	8	103	56	3	0	40	1.16
41745968--41746055	46	1.9	46	90	0	140	21	6	12	59	1.57
41747244--41747286	21	2.0	21	86	8	61	34	6	18	39	1.78
41748477--41748540	33	2.0	32	90	3	101	39	25	9	26	1.86
41748757--41748953	41	4.8	41	91	5	308	27	21	21	28	1.99
41750811--41750854	20	2.3	20	84	7	56	45	6	22	25	1.77
41755729--41755767	19	2.1	19	85	9	53	5	17	5	71	1.23
41757376--41757483	30	3.6	30	76	5	112	39	1	8	50	1.43
41765579--41765638	30	2.0	31	86	3	86	40	0	40	20	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41765852--41765888	9	4.1	9	92	0	65	29	10	13	45	1.77
41767557--41767593	9	4.1	9	89	0	56	48	13	8	29	1.71
41771862--41771901	3	13.3	3	100	0	80	67	0	0	32	0.91
41787338--41787380	19	2.3	19	83	0	50	46	2	9	41	1.48
41799229--41799498	27	10.2	26	78	8	260	43	20	19	16	1.88
41799229--41799498	53	5.1	53	79	8	282	43	20	19	16	1.88
41799229--41799483	80	3.2	80	78	9	263	43	20	19	16	1.88
41801563--41801660	47	2.0	48	81	14	114	36	7	4	52	1.48
41807854--41808519	44	15.2	42	65	16	248	27	25	23	23	2.00
41807752--41808696	439	2.2	440	90	0	1498	27	24	24	23	2.00
41807752--41808696	88	10.8	88	89	0	1406	27	24	24	23	2.00
41810133--41810157	5	5.0	5	100	0	50	20	0	0	80	0.72
41810287--41810384	47	2.0	48	81	14	114	36	7	4	52	1.48
41823618--41823821	90	2.3	90	81	5	252	29	20	15	34	1.93
41825873--41825899	14	1.9	14	100	0	54	14	18	22	44	1.86
41832758--41832873	44	2.6	45	87	1	162	34	17	7	40	1.78
41836373--41836420	13	3.6	14	78	15	50	22	12	14	50	1.77
41838007--41838116	31	3.5	30	77	15	98	32	27	2	37	1.71
41838112--41838173	32	1.9	33	83	3	81	41	30	0	27	1.56
41838551--41838584	11	3.0	11	91	4	50	11	0	14	73	1.10
41840346--41840395	16	3.0	16	78	18	57	66	2	2	30	1.14
41840346--41840396	17	3.0	16	76	21	50	66	1	1	29	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41840524--41840558	18	1.9	18	88	0	52	48	0	0	51	1.00
41840845--41840887	21	2.0	22	82	13	54	41	2	2	53	1.26
41842121--41842145	3	8.3	3	100	0	50	32	0	36	32	1.58
41845077--41845143	31	2.2	29	76	10	73	34	11	8	44	1.73
41847281--41847332	13	4.1	13	72	22	56	59	9	11	19	1.59
41847725--41847769	18	2.5	18	82	7	56	40	17	4	37	1.70
41850597--41850640	11	3.8	11	80	11	52	31	0	4	63	1.14
41852444--41852504	2	30.5	2	100	0	122	0	0	49	50	1.00
41852683--41852808	33	3.8	32	74	12	112	30	16	26	25	1.97
41853945--41854000	25	2.2	25	78	6	60	60	7	8	23	1.51
41853800--41854363	206	2.8	206	91	3	912	40	10	14	34	1.81
41869716--41869856	40	3.5	40	92	0	228	30	21	21	26	1.98
41870130--41870160	2	15.5	2	93	0	53	45	0	0	54	0.99
41871267--41871297	14	2.2	14	94	0	53	45	3	0	51	1.17
41871845--41871909	32	2.1	32	91	5	107	50	3	24	21	1.63
41871871--41871996	57	2.2	57	90	5	193	50	6	15	27	1.69
41876983--41877012	11	2.7	11	89	0	51	50	0	0	50	1.00
41879388--41879433	18	2.6	18	89	0	74	34	10	15	39	1.82
41885029--41885192	62	2.7	63	83	7	219	21	27	27	23	1.99
41891983--41892125	62	2.3	62	86	4	200	20	29	24	25	1.99
41895213--41895258	18	2.5	20	83	16	64	32	4	23	39	1.75
41896772--41896888	54	2.2	54	84	3	146	28	24	25	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41897961--41897996	2	18.0	2	100	0	72	50	0	50	0	1.00
41898967--41898998	3	10.7	3	100	0	64	68	0	0	31	0.90
41903283--41903332	21	2.4	22	71	21	52	44	2	4	50	1.32
41904594--41904754	33	4.8	32	71	8	124	28	26	16	28	1.97
41907491--41907533	8	5.2	8	78	15	52	72	2	2	23	1.08
41907491--41907537	17	2.8	18	78	12	55	70	2	2	25	1.10
41907482--41907552	15	4.5	15	75	14	54	66	5	1	26	1.22
41907545--41907609	21	3.1	20	78	10	67	61	6	3	29	1.35
41907677--41907706	3	10.0	3	100	0	60	66	0	0	33	0.92
41909302--41909359	26	2.1	29	84	12	77	55	12	8	24	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221