genome.fa.s26.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  131  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40434413--40434474	26	2.4	26	86	5	81	30	9	14	45	1.77
40475132--40475185	26	2.0	27	82	10	67	37	5	22	35	1.77
40477890--40477916	12	2.2	12	100	0	54	14	22	33	29	1.94
40479136--40479212	25	3.1	25	84	0	109	29	20	16	32	1.95
40490602--40490650	25	2.0	25	84	15	66	44	14	6	34	1.70
40495187--40495448	40	6.6	40	89	3	363	25	27	21	25	2.00
40503200--40503381	79	2.3	80	82	11	216	24	26	22	25	2.00
40503200--40503381	40	4.6	41	82	12	195	24	26	22	25	2.00
40511867--40511904	14	2.9	14	81	18	55	50	0	0	50	1.00
40512027--40512051	8	3.1	8	100	0	50	24	12	0	64	1.27
40513839--40513872	17	1.9	18	88	5	52	82	2	8	5	0.93
40514761--40515027	50	5.3	50	68	3	205	24	26	20	28	1.99
40514756--40515022	100	2.7	100	86	0	381	24	26	20	28	1.99
40515215--40515535	88	3.6	88	90	0	464	24	26	20	28	1.99
40520295--40520351	27	2.1	27	83	6	71	64	8	8	17	1.46
40527474--40527532	24	2.4	24	74	20	59	52	3	3	40	1.35
40528427--40528464	16	2.3	16	83	16	51	81	2	7	7	0.96
40530871--40530946	28	2.8	28	80	15	79	26	3	0	69	1.05
40530891--40530926	16	2.3	16	95	4	65	27	0	0	72	0.85
40530874--40530958	26	3.1	27	80	14	79	25	3	0	70	1.03
40530997--40531049	8	6.5	8	79	12	54	24	3	0	71	1.02
40531098--40531143	10	4.6	10	80	0	56	23	0	6	69	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40531096--40531155	21	2.9	21	76	11	61	28	0	5	66	1.12
40554617--40554685	16	4.3	16	87	7	104	40	5	33	20	1.76
40554617--40554685	32	2.2	32	94	5	122	40	5	33	20	1.76
40554665--40554778	44	2.6	45	84	5	151	30	5	31	32	1.80
40554920--40554954	18	2.0	18	88	5	54	54	0	0	45	0.99
40555017--40555068	14	3.6	14	75	14	52	53	0	1	44	1.11
40554914--40555134	117	1.9	120	90	5	360	50	4	1	42	1.33
40556803--40556833	4	7.8	4	92	0	53	25	3	22	48	1.66
40557804--40557894	46	2.0	46	93	0	155	40	18	13	27	1.88
40558891--40558940	17	2.9	17	81	3	64	56	8	0	36	1.29
40564046--40564315	43	6.3	43	88	3	400	31	30	17	20	1.95
40564046--40564315	87	3.1	85	89	3	398	31	30	17	20	1.95
40569595--40569681	42	2.1	42	95	0	156	20	26	16	36	1.93
40578304--40578353	22	2.3	22	96	0	91	28	40	20	12	1.87
40584494--40584532	16	2.6	16	84	8	55	41	2	33	23	1.68
40584781--40584879	47	2.1	48	96	1	182	46	0	7	46	1.30
40585305--40585333	15	1.9	15	100	0	58	34	51	0	13	1.42
40585602--40585642	22	1.9	21	85	5	55	36	39	0	24	1.56
40585183--40585888	318	2.2	317	90	4	1100	42	26	2	28	1.68
40585873--40585939	7	9.7	7	80	3	82	46	37	1	14	1.55
40585895--40585949	21	2.6	21	88	2	74	49	34	0	16	1.46
40585933--40586012	37	2.2	37	97	0	151	37	35	0	27	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40585993--40586041	7	6.9	7	76	4	53	32	46	0	20	1.51
40586003--40586043	15	2.8	15	88	3	57	36	46	0	17	1.48
40586064--40586101	14	2.7	15	88	12	62	42	31	0	26	1.56
40587225--40587693	41	11.4	40	82	5	501	34	26	18	20	1.95
40587225--40587671	208	2.2	205	85	5	580	34	27	19	19	1.96
40591320--40591353	8	4.2	8	100	0	68	76	0	0	23	0.79
40593630--40593667	17	2.2	17	95	0	67	18	21	39	21	1.93
40595447--40595515	29	2.4	29	77	0	84	46	14	20	18	1.84
40596835--40597104	42	6.4	42	82	6	305	30	21	21	26	1.98
40596835--40597104	127	2.1	128	82	6	325	30	21	21	26	1.98
40596835--40597105	85	3.2	84	84	7	318	30	21	21	26	1.98
40597539--40597577	12	3.2	12	88	0	60	5	38	15	41	1.69
40597563--40597631	21	3.3	21	85	0	84	2	40	20	36	1.67
40603127--40603179	7	7.0	7	91	8	70	30	0	16	52	1.44
40603134--40603528	9	43.8	9	77	7	358	32	3	17	47	1.64
40603237--40603504	73	3.7	73	91	1	405	32	1	16	49	1.57
40603690--40603727	16	2.4	16	91	4	60	52	5	0	42	1.24
40603724--40603751	13	2.2	13	100	0	56	46	7	7	39	1.59
40603720--40603769	17	3.2	17	81	18	72	52	6	6	36	1.51
40605053--40605432	191	2.0	191	90	0	598	44	12	23	18	1.85
40606003--40606043	14	2.9	14	88	3	55	34	51	0	14	1.43
40606095--40606138	21	2.1	21	83	8	54	38	36	0	25	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40606272--40606391	21	5.6	22	66	21	76	43	34	0	21	1.59
40606804--40607400	114	5.2	114	85	4	810	25	20	19	34	1.96
40608793--40609040	124	2.0	124	91	0	406	27	22	15	35	1.94
40617214--40617250	19	1.9	19	94	0	65	13	32	0	54	1.40
40619023--40619049	12	2.2	12	100	0	54	25	7	0	66	1.17
40622107--40622216	55	2.0	55	96	0	202	28	20	20	30	1.98
40631913--40631979	28	2.4	28	82	7	75	50	8	1	38	1.43
40633554--40633840	42	6.8	42	90	2	434	32	21	21	24	1.98
40633554--40633930	84	4.5	82	81	7	348	30	20	20	27	1.98
40633554--40633927	126	3.0	126	85	3	416	30	20	21	27	1.98
40633995--40634028	14	2.4	14	95	0	59	52	20	8	17	1.71
40634252--40634322	21	3.4	21	80	0	79	2	45	18	33	1.64
40639770--40639934	7	19.0	9	65	32	69	33	0	20	45	1.52
40639784--40640201	18	21.6	19	66	24	82	32	0	20	46	1.56
40639815--40640220	26	16.1	26	87	6	579	32	0	20	46	1.56
40639815--40640220	51	8.0	51	88	6	571	32	0	20	46	1.56
40639990--40640216	19	12.5	19	67	23	100	32	0	19	46	1.56
40640257--40640404	74	2.0	74	100	0	296	40	6	1	51	1.37
40640553--40640623	13	5.5	13	86	0	106	50	2	7	39	1.44
40640552--40640623	26	2.8	26	100	0	144	50	2	6	40	1.44
40640628--40640926	17	16.6	17	70	23	161	42	1	11	43	1.51
40640595--40640935	57	6.5	57	75	20	375	44	2	10	42	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40640645--40640755	44	2.7	40	86	10	177	44	1	10	43	1.50
40640612--40640914	101	3.0	100	94	4	533	44	1	10	42	1.50
40640746--40640852	40	2.7	40	94	2	189	43	1	11	42	1.51
40640595--40640903	97	3.1	97	93	4	521	44	2	10	42	1.51
40642266--40642305	11	3.7	11	93	3	64	27	27	10	35	1.89
40644230--40644305	7	10.9	7	74	5	64	46	35	1	17	1.56
40644345--40644394	17	3.0	17	94	2	84	50	16	0	34	1.45
40644416--40644766	113	3.1	111	80	7	402	26	23	19	30	1.98
40644546--40644948	188	2.1	188	93	0	689	27	22	18	32	1.97
40644739--40645164	114	3.7	114	79	4	464	26	23	19	30	1.98
40648127--40648246	41	2.9	41	74	7	98	40	17	15	26	1.90
40648340--40648392	24	2.2	24	86	3	72	26	24	0	49	1.51
40659256--40659294	18	2.0	20	85	9	55	66	7	5	20	1.36
40659364--40659523	86	1.9	86	98	1	313	56	13	5	24	1.58
40660647--40660751	38	2.7	39	83	12	119	60	0	5	32	1.26
40660754--40660824	2	35.5	2	75	10	56	50	0	8	40	1.33
40660671--40660828	10	16.1	10	65	17	55	55	0	6	36	1.31
40660923--40661009	3	28.0	3	71	9	50	63	2	4	29	1.27
40660970--40661022	18	2.9	19	83	8	65	60	0	5	33	1.20
40661749--40661782	11	3.1	11	100	0	68	79	8	11	0	0.94
40664468--40664513	20	2.2	21	81	14	60	60	2	0	36	1.09
40666998--40667023	10	2.6	10	100	0	52	19	0	23	57	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40669046--40669101	14	4.0	15	80	11	57	41	14	7	37	1.73
40674829--40674854	10	2.6	10	100	0	52	88	11	0	0	0.52
40675252--40675339	11	8.6	11	78	18	93	40	0	0	59	0.98
40675250--40675328	39	2.1	38	92	2	131	39	0	0	60	0.97
40675275--40675331	28	2.0	29	86	10	82	42	0	0	57	0.98
40675253--40675365	11	11.2	10	73	20	78	40	0	0	59	0.97
40675255--40675365	9	12.1	9	74	17	70	40	0	0	59	0.97
40679749--40679807	28	2.1	28	100	0	118	20	22	10	47	1.79
40681466--40681532	33	2.0	34	97	2	127	28	26	14	29	1.96
40685423--40685483	23	2.5	25	84	15	83	31	21	24	22	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221