genome.fa.s26.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  115  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35295680--35295755	38	2.0	38	100	0	152	26	2	36	34	1.71
35297346--35297423	28	2.8	28	94	0	138	37	23	15	24	1.93
35297789--35297902	27	4.2	27	75	4	113	21	16	21	39	1.92
35312439--35312601	27	6.1	27	83	4	204	41	22	19	17	1.90
35312713--35312793	26	3.1	26	83	0	99	24	20	19	34	1.96
35324935--35324981	17	2.8	17	75	15	53	68	6	0	25	1.13
35325492--35325525	15	2.4	14	85	9	50	82	0	2	14	0.79
35332274--35332590	158	2.0	158	97	0	598	32	6	21	39	1.79
35342839--35342863	5	5.0	5	100	0	50	60	0	0	40	0.97
35366731--35366767	17	2.1	19	85	14	53	35	10	8	45	1.69
35370960--35370991	17	1.9	16	93	6	55	15	12	40	31	1.85
35381766--35381929	33	5.0	33	87	1	213	28	19	20	31	1.97
35389470--35389525	27	2.2	25	84	12	69	26	19	28	25	1.99
35395383--35395434	27	1.9	27	92	0	86	21	25	28	25	1.99
35395447--35395551	43	2.5	43	90	1	158	22	17	27	32	1.96
35402892--35403101	33	5.8	33	70	19	132	20	20	28	30	1.98
35402812--35403099	75	3.8	75	91	0	450	21	18	28	31	1.97
35405227--35405291	30	2.3	27	86	7	85	53	0	3	43	1.16
35405735--35405776	10	4.3	10	80	17	52	73	0	9	16	1.08
35406806--35406869	23	2.8	23	90	2	94	20	23	21	34	1.97
35407036--35407079	12	3.6	12	90	3	70	36	0	25	38	1.56
35412976--35413032	23	2.5	24	82	5	73	47	0	5	47	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35412965--35413029	30	2.3	26	80	15	67	50	0	4	44	1.22
35413473--35413514	10	4.3	10	80	17	52	73	0	9	16	1.08
35414541--35414607	23	3.0	23	93	2	109	20	23	22	32	1.98
35414774--35414829	12	4.6	12	88	2	85	37	0	25	37	1.56
35415934--35415977	5	9.6	5	83	14	51	40	15	0	43	1.47
35415939--35415977	21	1.9	19	85	10	51	41	15	0	43	1.46
35420467--35420503	9	4.1	9	89	0	56	45	10	10	32	1.74
35429643--35429903	39	6.6	39	88	6	318	24	27	21	25	1.99
35432424--35432517	28	3.4	28	96	0	170	31	24	20	23	1.98
35433752--35433837	28	3.1	27	90	5	127	33	25	19	20	1.97
35433765--35433854	28	3.2	28	93	0	144	30	24	21	24	1.99
35441290--35441412	25	5.0	25	70	8	72	31	18	21	27	1.97
35443332--35443378	24	1.9	25	86	4	69	38	27	6	27	1.81
35443321--35443404	30	3.0	30	75	18	99	32	26	5	35	1.81
35448745--35448777	16	2.0	17	88	5	50	36	18	3	42	1.66
35462239--35462425	95	2.1	92	88	8	276	50	11	5	32	1.63
35463982--35464076	37	2.5	38	82	3	111	36	40	12	10	1.78
35481091--35481199	33	3.5	32	84	9	122	19	22	27	31	1.97
35485522--35485778	128	2.0	128	95	0	460	29	19	25	25	1.99
35485650--35486127	172	2.8	172	94	0	839	31	20	23	23	1.98
35485527--35485852	128	2.5	127	85	4	388	29	19	25	25	1.98
35485525--35486350	44	19.1	44	66	13	261	31	19	23	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35485998--35486356	131	2.7	131	89	0	531	31	19	23	26	1.98
35489490--35489538	20	2.5	19	83	6	62	36	4	2	57	1.30
35489501--35489538	19	1.9	19	89	5	58	39	5	2	52	1.38
35498578--35498677	33	3.0	33	84	5	139	30	19	21	30	1.97
35500575--35500611	17	2.1	19	85	10	51	37	5	2	54	1.38
35500944--35501423	79	6.1	79	83	4	497	33	15	12	37	1.86
35501363--35501562	86	2.3	87	81	2	242	33	11	13	42	1.79
35501476--35501636	73	2.2	76	82	9	190	32	8	13	45	1.73
35506644--35506975	51	6.6	50	75	8	262	28	14	26	30	1.95
35506640--35506923	102	2.8	102	86	5	382	28	15	26	29	1.96
35513153--35513491	51	6.7	51	78	8	320	28	15	26	30	1.96
35513153--35513494	102	3.4	100	82	7	390	27	15	26	30	1.96
35518545--35518612	27	2.4	27	80	4	82	51	17	4	26	1.64
35519448--35519500	27	1.9	28	92	3	90	30	18	24	26	1.98
35519780--35519857	32	2.5	32	85	2	104	38	19	20	21	1.94
35519862--35519911	26	1.9	26	91	0	82	40	24	20	16	1.91
35519999--35520132	24	5.6	24	81	0	133	47	23	4	24	1.70
35520150--35520212	27	2.3	27	83	0	81	25	20	12	41	1.88
35520216--35520293	27	2.9	26	88	7	111	37	14	19	29	1.91
35520163--35520408	54	4.6	53	73	6	165	30	18	17	33	1.95
35520285--35520456	27	6.4	27	81	0	209	25	20	18	34	1.96
35520285--35520456	81	2.1	81	86	0	245	25	20	18	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35521715--35521763	25	2.0	25	95	0	89	44	28	10	16	1.80
35523739--35524053	43	7.5	41	73	11	235	24	15	24	35	1.94
35523777--35524061	85	3.4	85	91	0	473	24	15	24	35	1.95
35526796--35527093	27	11.1	27	81	0	292	19	18	20	41	1.90
35527266--35527305	20	2.0	21	90	5	64	22	35	22	20	1.96
35535755--35535805	19	2.7	19	80	17	61	21	0	1	76	0.88
35535758--35535800	20	2.2	20	86	0	59	23	0	2	74	0.93
35535880--35535920	17	2.5	17	88	11	59	2	12	4	80	0.97
35537680--35537709	10	3.1	10	95	4	53	63	10	0	26	1.26
35538179--35538224	24	2.0	24	87	12	69	76	0	17	6	1.00
35542996--35543023	13	2.2	13	100	0	56	7	7	7	78	1.09
35544592--35544630	19	2.1	19	100	0	78	38	5	15	41	1.69
35549126--35549158	12	2.8	12	90	9	50	45	9	9	36	1.68
35551454--35551851	43	9.3	43	85	2	464	30	30	18	19	1.96
35555365--35555742	106	3.5	105	82	12	375	26	14	14	44	1.83
35555333--35555742	213	1.9	212	86	8	585	26	14	14	44	1.84
35555470--35555742	114	2.5	107	89	4	402	27	13	13	44	1.82
35555637--35555799	76	2.1	78	92	4	269	30	11	15	42	1.82
35556679--35556703	7	3.6	7	100	0	50	44	56	0	0	0.99
35556654--35556867	89	2.4	89	83	2	275	44	31	0	22	1.60
35556870--35556923	14	3.9	13	80	9	54	31	42	0	25	1.55
35556870--35556923	21	2.5	20	80	16	56	31	42	0	25	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35556889--35556935	21	2.2	21	85	7	60	34	38	0	27	1.57
35556928--35556952	13	1.9	13	100	0	50	48	28	0	24	1.52
35556954--35556986	15	2.3	15	89	5	50	36	30	0	33	1.58
35557370--35557555	41	4.5	41	88	0	282	31	19	21	26	1.98
35557611--35557716	40	2.7	40	79	4	117	16	24	24	33	1.96
35566369--35566479	41	2.7	41	84	2	152	21	29	14	34	1.93
35570035--35570082	19	2.6	17	81	12	51	41	2	8	47	1.45
35575934--35575965	16	2.0	16	93	0	55	31	18	15	34	1.93
35579163--35579209	23	2.0	23	95	0	85	42	12	14	29	1.83
35580889--35580945	27	2.3	23	71	23	62	22	24	28	24	2.00
35580891--35580974	28	3.0	28	84	8	109	28	22	25	23	1.99
35581336--35581585	27	9.3	27	77	3	211	21	19	17	42	1.90
35581337--35581585	81	3.1	80	78	5	268	21	19	16	42	1.89
35581336--35581577	54	4.5	53	82	3	270	21	19	16	41	1.90
35588675--35588750	26	3.0	26	78	1	82	38	22	22	17	1.93
35588910--35588971	27	2.2	28	82	5	81	22	22	19	35	1.96
35588926--35589204	54	5.1	54	77	6	267	20	17	19	43	1.89
35588927--35589204	27	10.3	27	76	3	227	19	17	19	43	1.89
35588930--35589204	109	2.5	109	82	2	338	20	17	19	43	1.88
35591144--35591172	12	2.3	13	94	5	51	20	6	6	65	1.40
35597716--35598005	50	5.7	50	82	6	318	26	23	26	23	2.00
35597720--35597998	150	1.8	152	83	8	370	26	23	27	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35599340--35599378	15	2.4	16	87	8	53	53	7	17	20	1.68
35609868--35609894	6	4.5	6	100	0	54	85	0	0	14	0.61
35614085--35614172	46	1.9	46	97	0	167	40	14	21	22	1.90
35614148--35614282	66	2.0	66	100	0	270	42	5	21	30	1.74
35619463--35619507	20	2.2	21	84	7	58	71	6	0	22	1.09
35637066--35637218	28	5.5	28	95	1	247	31	28	13	26	1.94
35637065--35637239	56	3.1	54	85	7	217	32	30	13	24	1.93
35655329--35655355	6	4.5	6	100	0	54	85	0	0	14	0.61
35659499--35659585	46	1.9	45	95	2	156	41	14	20	22	1.89
35659561--35659694	65	2.0	66	98	1	261	43	5	21	29	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221