genome.fa.s26.2.7.7.80.10.50.1000.214.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  214  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62712257--62712628	131	2.8	131	87	4	523	32	11	15	40	1.82
62724097--62724129	16	2.0	17	94	5	59	48	12	6	33	1.65
62743453--62743514	22	3.1	22	60	26	55	22	14	11	51	1.74
62750246--62750838	150	4.0	149	89	3	886	33	11	13	42	1.80
62751509--62751541	12	2.6	13	85	9	50	75	0	0	24	0.80
62752121--62752147	3	9.0	3	100	0	54	0	33	0	66	0.92
62752459--62752523	31	2.1	31	88	5	96	46	1	1	50	1.20
62752471--62752530	30	2.0	31	86	3	86	48	0	1	50	1.11
62753112--62753160	25	1.9	26	83	4	64	40	8	4	46	1.52
62765250--62765274	13	1.9	13	100	0	50	0	16	0	84	0.63
62766115--62766314	109	1.8	109	89	6	316	44	18	13	23	1.85
62767127--62767347	113	2.0	113	88	0	334	35	18	14	31	1.92
62769605--62769660	13	4.1	13	74	19	51	48	1	1	48	1.22
62769601--62769666	29	2.3	29	92	5	109	48	1	3	46	1.26
62769618--62769673	16	3.6	16	71	24	57	42	3	3	50	1.37
62770886--62770944	27	2.4	23	79	20	66	77	0	15	6	0.96
62770908--62770950	18	2.4	17	76	7	50	76	0	20	2	0.89
62770888--62770940	27	2.0	27	85	7	72	75	0	16	7	1.02
62772964--62773132	46	3.5	46	75	13	151	29	28	15	26	1.96
62772965--62773109	52	3.0	48	79	10	161	29	28	16	24	1.97
62775612--62775708	30	3.2	30	81	10	99	57	14	17	10	1.64
62775620--62775699	15	5.4	15	80	7	92	58	13	17	10	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62775631--62775708	15	5.2	15	78	9	79	56	15	16	11	1.67
62778913--62779081	46	3.5	46	75	13	151	29	28	15	26	1.96
62778914--62779058	52	3.0	48	79	10	161	29	28	16	24	1.97
62789100--62789145	22	2.0	23	83	4	58	30	15	0	54	1.41
62793361--62793566	60	3.4	60	87	1	279	41	18	17	22	1.90
62800296--62800335	21	1.9	21	89	0	62	42	12	20	25	1.86
62804990--62805040	10	5.0	10	77	13	50	27	0	7	64	1.21
62817560--62817636	24	3.2	24	67	17	61	48	3	6	41	1.47
62817561--62817657	47	2.0	47	86	2	131	50	5	6	38	1.50
62821934--62821971	9	4.2	9	83	9	51	34	0	2	63	1.09
62822549--62822585	19	2.0	19	94	5	67	43	0	5	51	1.24
62822555--62822621	19	3.5	20	78	15	70	41	0	7	50	1.30
62822556--62822616	20	3.1	20	80	15	65	40	0	6	52	1.27
62824543--62826065	60	25.4	60	83	2	1274	21	9	40	28	1.84
62824640--62825839	30	39.7	34	68	17	269	20	9	41	29	1.83
62824543--62826065	240	6.3	240	87	0	1621	21	9	40	28	1.84
62824543--62826065	120	12.7	120	85	0	1412	21	9	40	28	1.84
62831466--62831594	60	2.2	60	97	0	240	36	3	43	17	1.64
62831562--62833261	48	35.3	48	88	0	1917	25	3	49	21	1.65
62831706--62832610	27	37.5	27	62	21	163	24	3	49	22	1.64
62832624--62832703	27	3.2	27	62	20	64	21	6	52	20	1.68
62832699--62832780	27	3.3	26	63	19	66	19	3	60	15	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62832771--62832844	21	3.0	27	69	22	88	27	6	48	17	1.72
62832889--62832967	21	3.5	21	65	18	59	25	2	48	24	1.64
62832894--62832972	24	3.3	24	65	19	65	25	2	49	22	1.62
62833131--62833372	117	2.1	117	84	1	270	27	2	50	19	1.62
62833225--62833273	21	2.3	21	96	0	89	26	0	55	18	1.43
62833179--62833324	69	2.1	69	84	0	184	28	2	50	19	1.59
62833251--62833774	48	10.9	48	84	0	582	24	3	50	21	1.63
62833086--62833420	165	2.0	165	89	0	508	27	3	49	20	1.64
62833038--62833474	213	2.1	213	88	0	633	27	2	48	20	1.64
62833398--62833471	24	3.1	24	70	14	71	27	0	52	20	1.46
62831598--62833786	144	15.0	142	78	7	1502	25	3	49	21	1.65
62837899--62838998	48	22.8	48	84	2	1153	26	5	48	20	1.70
62837993--62838075	27	3.3	27	66	19	79	31	4	44	19	1.71
62838233--62838315	27	3.3	27	66	19	79	30	6	45	18	1.73
62838425--62838604	27	7.3	26	61	21	66	25	5	49	20	1.69
62838821--62838897	24	3.2	24	64	14	68	25	5	44	24	1.75
62838813--62838900	27	3.5	27	65	17	80	23	4	45	26	1.72
62838888--62838917	15	2.0	15	93	0	51	23	0	56	20	1.42
62838965--62839053	30	3.0	30	74	0	88	23	5	44	25	1.75
62841025--62841076	24	2.2	24	89	0	77	55	9	1	32	1.43
62844095--62844138	23	1.9	23	86	9	63	47	11	2	38	1.52
62845306--62845388	44	1.9	43	80	11	98	57	4	14	22	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62850016--62850062	17	2.8	16	83	6	58	59	0	0	40	0.97
62850016--62850055	8	4.8	8	87	9	53	60	0	0	40	0.97
62850024--62850062	15	2.4	17	83	12	55	61	0	0	38	0.96
62858808--62858842	18	1.9	18	88	0	52	34	0	8	57	1.29
62862208--62862814	210	2.9	205	80	6	593	40	7	14	37	1.74
62866762--62866791	4	7.5	4	100	0	60	76	0	0	23	0.78
62872543--62872576	18	1.9	18	88	5	52	29	0	5	64	1.17
62873405--62873453	21	2.4	19	78	15	53	51	2	2	44	1.24
62875166--62875210	18	2.5	19	82	13	60	46	0	0	53	1.00
62875169--62875212	12	3.8	12	81	6	54	45	0	0	54	0.99
62875335--62875546	89	2.4	89	81	6	225	40	18	9	31	1.83
62876556--62876598	21	2.0	21	95	0	77	41	6	27	23	1.80
62904664--62904708	22	2.0	22	91	8	74	37	0	2	60	1.09
62904676--62904709	16	2.2	15	89	5	50	38	0	2	58	1.13
62904673--62904715	18	2.5	16	81	11	50	39	0	2	58	1.11
62914381--62914413	8	4.1	8	88	11	50	0	0	12	87	0.53
62914371--62914410	21	1.9	21	84	0	53	0	7	10	82	0.84
62914381--62914413	15	2.1	16	88	5	50	0	0	12	87	0.53
62918236--62918267	5	6.4	5	100	0	64	40	0	0	59	0.97
62936473--62936556	42	2.0	42	100	0	168	45	16	11	26	1.82
62941519--62941545	2	13.5	2	100	0	54	51	0	48	0	1.00
62942411--62942484	29	2.6	29	95	0	130	35	18	9	36	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62942414--62942495	29	2.8	29	90	0	92	36	18	8	36	1.81
62944296--62944369	31	2.4	31	71	8	78	41	16	18	22	1.89
62946468--62946507	19	2.1	19	85	0	53	32	0	5	62	1.17
62948145--62948177	16	2.0	17	88	5	50	36	0	0	63	0.95
62950355--62950622	139	1.9	139	90	2	423	50	10	11	26	1.72
62956706--62956732	14	1.9	14	100	0	54	55	22	7	14	1.64
62964373--62964567	97	2.0	97	100	0	390	47	20	14	17	1.82
62966390--62966432	20	2.2	20	100	0	86	18	13	30	37	1.90
62970822--62970894	30	2.4	30	86	2	92	46	6	12	34	1.68
62971306--62971365	31	1.9	31	86	6	86	31	11	5	51	1.60
62981745--62981788	18	2.5	17	82	10	52	56	4	2	36	1.32
62992822--62993084	126	2.1	129	97	2	496	33	21	12	32	1.91
62993430--62993471	19	2.2	19	86	4	57	61	2	0	35	1.09
62998522--62998580	27	2.1	28	84	9	77	54	5	3	37	1.39
62998535--62998688	65	2.4	64	88	5	238	52	9	3	34	1.50
63006100--63006144	24	1.9	23	86	4	63	51	8	2	37	1.46
63006258--63006329	28	2.5	29	84	6	94	36	12	6	44	1.69
63008778--63008979	46	4.3	48	87	8	256	36	14	21	27	1.92
63008712--63008979	97	2.7	98	92	1	448	35	14	22	27	1.93
63008943--63009088	37	4.0	37	93	1	242	36	16	21	24	1.94
63008718--63008984	143	1.8	143	83	7	324	35	14	22	27	1.94
63011727--63011929	32	6.3	32	83	7	207	34	20	11	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63011727--63011929	95	2.1	97	81	7	227	34	20	11	33	1.88
63011934--63012019	30	2.9	29	89	3	136	25	29	12	32	1.93
63012012--63012150	30	4.6	30	88	4	217	28	28	17	25	1.97
63030717--63030756	21	1.9	21	84	0	53	30	10	7	52	1.62
63030867--63030900	1	34.0	1	100	0	68	100	0	0	0	0.00
63031030--63031116	28	3.0	29	83	5	113	16	5	20	57	1.59
63034933--63034972	20	2.0	20	100	0	80	30	30	15	25	1.95
63041633--63041698	34	1.9	34	96	0	123	28	15	12	43	1.82
63042126--63042337	106	2.0	106	99	0	415	46	6	12	33	1.68
63046385--63046441	22	2.6	22	74	0	60	49	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221