genome.fa.s26.2.7.7.80.10.50.1000.88.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  88  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26642875--26642910	15	2.4	15	95	0	63	19	33	30	16	1.94
26644116--26644155	12	3.2	12	82	6	53	72	10	15	2	1.21
26647953--26647979	4	6.8	4	100	0	54	51	0	0	48	1.00
26652451--26652638	45	4.2	45	86	4	229	21	16	27	35	1.94
26656044--26656072	13	2.2	13	100	0	58	58	0	0	41	0.98
26656335--26656401	26	2.5	27	95	2	118	43	7	0	49	1.31
26657027--26657082	18	3.0	19	78	5	69	37	12	1	48	1.52
26657022--26657084	18	3.4	18	72	12	56	39	11	3	46	1.55
26657079--26657134	18	3.0	19	78	5	78	50	0	12	37	1.41
26657560--26657611	27	1.9	27	88	0	77	17	32	19	30	1.95
26657562--26657620	27	2.2	27	81	0	64	16	28	23	30	1.97
26657661--26657728	27	2.5	27	95	0	118	51	0	8	39	1.33
26657876--26657922	24	2.0	23	87	4	67	25	29	2	42	1.67
26660445--26660629	92	2.0	91	81	3	210	43	9	9	36	1.71
26663167--26663625	29	15.8	29	80	1	373	37	13	25	23	1.92
26663167--26663625	58	7.9	58	75	2	438	37	13	25	23	1.92
26669942--26670092	53	2.8	53	82	2	187	35	13	22	28	1.92
26669946--26670119	53	3.3	52	77	3	177	33	13	24	28	1.94
26670307--26670403	29	3.4	29	70	8	81	27	19	22	29	1.98
26670300--26670380	28	2.9	28	74	9	83	30	19	20	28	1.97
26670301--26670411	57	1.9	58	88	1	170	28	19	22	28	1.98
26670441--26670514	29	2.6	28	80	6	78	32	17	22	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26674780--26674819	21	1.9	21	84	0	53	35	0	10	55	1.34
26677222--26677304	28	3.1	26	84	8	78	33	25	10	30	1.90
26677236--26677332	28	3.5	28	85	4	117	32	27	12	26	1.92
26685197--26685266	27	2.6	26	95	2	95	31	28	12	27	1.93
26685197--26685294	28	3.5	28	90	2	135	31	28	13	26	1.94
26685743--26685769	12	2.2	12	100	0	54	40	0	7	51	1.30
26699361--26700465	44	25.2	44	62	14	197	31	20	23	24	1.98
26699235--26700632	658	2.1	660	93	1	2428	31	20	23	24	1.98
26700629--26701070	44	10.2	44	71	12	229	29	19	23	27	1.98
26699230--26700632	132	10.6	132	94	0	2364	31	20	23	24	1.98
26700646--26700856	84	2.4	87	78	11	220	29	18	23	28	1.98
26700629--26701070	217	2.0	217	91	0	715	29	19	23	27	1.98
26701266--26701378	19	5.8	19	85	4	163	39	9	15	35	1.80
26701267--26701373	40	2.7	40	91	2	173	40	10	14	35	1.79
26701266--26701385	59	2.1	56	86	6	161	40	9	15	35	1.79
26701900--26701941	16	2.6	16	80	3	57	9	9	2	78	1.05
26702142--26702191	25	2.0	26	88	4	75	32	8	4	56	1.47
26702799--26702993	98	2.0	98	94	0	345	27	10	25	36	1.88
26706270--26706306	19	1.9	19	88	0	56	29	2	2	64	1.21
26707576--26707634	26	2.2	28	80	14	70	55	5	1	37	1.32
26707690--26707746	27	2.2	26	84	9	71	57	5	3	33	1.38
26709315--26709603	44	6.7	44	74	8	229	28	19	21	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26709315--26709602	128	2.2	129	88	3	429	28	19	21	30	1.97
26709619--26710423	267	3.0	266	90	1	1263	26	25	20	27	1.99
26710453--26710624	88	2.0	88	89	0	263	27	25	19	27	1.99
26710461--26710607	45	3.3	45	68	3	127	27	27	17	27	1.98
26710488--26710623	44	3.1	44	70	4	121	27	25	19	27	1.99
26711581--26711651	35	2.0	35	100	0	142	28	32	14	25	1.94
26711919--26711963	6	8.2	6	76	18	53	0	17	0	82	0.68
26711919--26711961	16	2.7	16	88	0	68	0	18	0	81	0.69
26711921--26711964	10	4.2	10	88	8	61	0	15	0	84	0.63
26712776--26712841	25	2.6	25	83	9	71	56	6	18	19	1.62
26722158--26722244	25	3.6	25	84	6	99	35	20	25	18	1.95
26726045--26726232	51	3.7	51	79	2	191	25	13	27	34	1.93
26734693--26734724	6	5.3	6	100	0	64	0	34	0	65	0.93
26739001--26739044	15	2.8	16	89	3	63	40	4	22	31	1.74
26739002--26739060	16	3.8	16	86	6	68	38	3	23	33	1.72
26753808--26753934	61	2.1	61	82	5	150	45	12	3	38	1.58
26754581--26754994	211	2.0	211	98	0	801	36	16	13	33	1.88
26758139--26758170	5	6.4	5	100	0	64	40	21	0	37	1.54
26759787--26759851	24	2.8	23	68	25	55	40	1	7	50	1.40
26760654--26760725	26	2.8	24	80	14	72	31	18	9	40	1.83
26790806--26790841	18	2.1	18	89	5	56	41	5	16	36	1.72
26794266--26794372	20	5.3	20	70	5	90	37	20	30	11	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26794266--26794372	40	2.7	40	80	4	126	37	20	30	11	1.88
26804696--26805038	40	8.6	40	91	2	467	26	27	20	24	1.99
26812706--26812968	40	6.6	40	87	3	300	26	28	20	24	1.99
26820629--26820887	40	6.6	40	85	5	289	27	28	20	24	1.99
26820629--26820848	116	1.9	118	83	5	295	26	28	20	24	1.99
26835523--26835592	35	2.0	35	97	0	131	31	18	11	38	1.86
26840239--26840474	28	8.4	28	93	0	384	34	26	11	27	1.90
26848274--26848480	55	3.8	56	90	4	323	34	26	11	27	1.91
26848274--26848480	27	7.5	28	91	4	323	34	26	11	27	1.91
26852925--26852974	20	2.5	20	81	12	66	16	24	2	58	1.49
26863824--26863869	21	2.3	20	78	14	51	30	6	17	45	1.73
26886124--26886184	25	2.4	25	83	0	77	39	19	14	26	1.90
26895900--26895995	25	3.8	25	72	15	72	23	20	22	32	1.98
26901024--26901140	28	4.2	28	92	1	173	34	24	17	23	1.96
26901496--26901673	27	6.6	27	81	8	123	23	12	17	46	1.83
26901503--26901673	54	3.2	53	80	8	177	22	13	17	46	1.82
26901503--26901673	81	2.1	81	84	4	229	22	13	17	46	1.82
26903083--26903109	14	1.9	14	100	0	54	14	22	14	48	1.81
26919498--26919524	14	1.9	14	100	0	54	37	22	25	14	1.93
26932384--26932765	47	8.1	47	94	0	602	31	9	30	28	1.88
26932884--26932962	37	2.1	37	88	4	115	25	18	30	25	1.98
26936923--26936968	21	2.3	20	78	14	51	30	6	17	45	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26939829--26940000	50	3.5	50	78	2	168	29	23	26	20	1.99
26947149--26947270	50	2.4	50	83	0	145	28	21	27	22	1.99
26958044--26958087	22	2.0	22	81	0	52	47	27	2	22	1.63
26958602--26958705	50	2.1	49	81	10	115	31	21	4	42	1.74
26965714--26965831	41	2.9	41	80	13	127	34	16	27	22	1.95
26975709--26975984	145	1.9	145	96	0	507	30	23	15	30	1.96
26975965--26976032	29	2.3	29	85	5	93	27	30	13	27	1.94
26975822--26976181	174	2.1	174	97	0	684	30	25	15	29	1.95
26976134--26976212	29	2.7	30	82	13	110	30	30	13	25	1.94
26977405--26977504	50	2.0	50	100	0	200	24	32	4	40	1.73
26983834--26984109	145	1.9	145	97	0	525	30	23	15	29	1.95
26984090--26984157	29	2.3	29	85	5	93	27	30	13	27	1.94
26983947--26984306	174	2.1	174	98	0	693	30	25	15	29	1.95
26984259--26984337	29	2.7	30	82	13	110	30	30	13	25	1.94
26985902--26985999	41	2.4	40	76	5	106	33	15	31	19	1.93
26989334--26989373	20	2.0	20	100	0	80	20	15	25	40	1.90
26992575--26992621	20	2.3	20	92	0	76	53	0	21	25	1.46
26994324--26994379	24	2.3	24	87	0	76	46	14	17	21	1.84
26995650--26995694	22	2.0	23	83	16	58	53	6	17	22	1.67
26998180--26998221	22	2.0	22	85	4	59	52	14	4	28	1.62
26998214--26998257	23	2.0	23	86	8	65	54	4	4	36	1.41
27000782--27000821	21	1.9	21	89	0	62	42	12	10	35	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27005854--27005914	31	2.0	30	87	3	86	40	14	24	19	1.89
27005864--27005935	28	2.4	30	84	9	94	41	19	25	13	1.88
27005895--27005955	28	2.2	28	85	5	79	40	22	26	9	1.85
27010077--27010260	40	4.6	39	76	12	160	28	25	21	24	1.99
27010075--27010260	80	2.3	80	82	11	213	29	25	20	24	1.99
27017981--27018148	40	4.2	40	82	8	148	27	27	20	24	1.99
27018016--27018201	80	2.3	80	83	9	229	27	27	20	23	1.99
27018018--27018201	40	4.6	40	83	7	205	27	27	21	23	1.99
27023329--27023506	27	6.6	27	84	3	205	29	28	15	26	1.96
27023350--27023505	82	1.9	81	88	3	233	29	28	15	26	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221