genome.fa.s26.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  159  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48104444--48104583	74	1.9	75	85	4	194	32	17	21	29	1.96
48104309--48104698	188	2.1	188	92	0	636	32	15	21	30	1.94
48104444--48104602	74	2.1	75	81	4	187	35	16	20	27	1.94
48105125--48105157	7	4.7	7	92	0	57	15	0	51	33	1.43
48105118--48105157	21	1.9	21	94	0	71	17	0	47	35	1.48
48105129--48105168	14	3.1	13	85	10	55	17	0	50	32	1.47
48105267--48105349	7	11.9	7	79	5	60	21	2	45	30	1.65
48105267--48105346	21	3.8	21	77	6	81	22	2	43	31	1.66
48105575--48105601	14	1.9	14	100	0	54	48	0	7	44	1.31
48105637--48105674	17	2.3	17	90	4	60	81	0	5	13	0.85
48105671--48105762	47	2.0	47	84	0	121	42	7	3	46	1.48
48106166--48106557	198	2.0	198	88	1	588	29	16	20	34	1.94
48107057--48107081	10	2.5	10	100	0	50	48	12	8	32	1.69
48107879--48107951	7	10.3	7	82	2	92	4	13	12	69	1.32
48107877--48107951	21	3.5	21	83	1	105	5	13	12	69	1.35
48108355--48108764	100	4.1	100	96	1	741	39	7	4	49	1.49
48108834--48108885	13	4.0	13	92	0	77	46	9	1	42	1.47
48108853--48108988	53	2.6	53	85	0	200	38	11	5	45	1.62
48109133--48109330	9	22.8	9	70	11	126	44	21	3	31	1.67
48109164--48109303	25	5.4	25	75	6	111	45	19	3	31	1.67
48109237--48109341	25	4.2	25	76	11	106	45	19	2	32	1.65
48116374--48116411	16	2.4	16	95	0	67	26	34	2	36	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48125174--48125222	23	2.2	22	85	10	64	44	0	18	36	1.50
48125178--48125225	21	2.3	19	77	19	51	47	0	16	35	1.47
48127904--48127945	17	2.4	18	80	11	52	23	2	7	66	1.28
48133970--48134038	16	4.2	16	96	3	129	24	0	37	37	1.56
48133970--48134038	33	2.1	32	97	2	129	24	0	37	37	1.56
48134254--48134308	15	3.4	16	80	16	53	50	1	0	47	1.11
48134274--48134308	18	2.0	17	88	5	52	54	0	0	45	0.99
48134222--48134791	120	4.8	116	81	11	566	51	4	1	42	1.31
48134394--48134549	18	8.0	18	67	24	77	53	1	1	42	1.19
48134460--48134502	22	1.9	23	85	4	61	60	2	0	37	1.10
48134364--48134791	120	3.5	120	94	1	739	53	3	1	41	1.28
48134915--48134993	25	3.3	25	79	16	112	40	7	17	34	1.78
48146547--48146584	19	2.0	19	100	0	76	36	10	15	36	1.82
48151149--48151279	41	3.2	41	72	5	97	22	22	13	41	1.89
48153290--48153395	20	5.3	20	67	8	72	23	23	18	33	1.97
48153280--48153425	40	3.7	41	82	5	174	22	21	19	36	1.95
48158345--48158395	20	2.4	21	83	9	68	25	25	35	13	1.93
48158346--48158403	20	2.8	20	84	5	62	22	24	36	17	1.95
48161941--48161974	15	2.3	15	89	0	50	29	0	2	67	1.05
48167167--48167210	24	1.9	22	100	0	70	43	20	9	27	1.82
48172017--48172073	28	2.0	29	96	3	107	61	0	17	21	1.35
48181802--48181901	33	3.0	33	91	0	146	32	21	19	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48186376--48186408	14	2.2	16	89	10	52	81	0	9	9	0.87
48191718--48191783	34	1.9	34	100	0	132	53	6	16	24	1.66
48193558--48193637	35	2.3	34	78	20	85	38	2	6	52	1.40
48193920--48193974	21	2.6	21	91	8	94	27	40	9	23	1.85
48198286--48198315	4	7.5	4	100	0	60	73	0	0	26	0.84
48198452--48198519	28	2.4	28	92	0	118	42	10	0	47	1.37
48198528--48198559	16	2.0	16	93	0	55	65	21	6	6	1.38
48201307--48201337	14	2.2	14	94	0	53	38	9	19	32	1.84
48201747--48201844	27	3.6	27	71	17	103	13	13	21	52	1.74
48203886--48203943	26	2.2	26	96	0	107	34	12	10	43	1.76
48204264--48204340	14	5.0	15	71	20	52	42	15	9	32	1.78
48204280--48204319	20	2.0	20	90	0	62	50	12	10	27	1.72
48204268--48204334	34	1.9	35	90	3	109	46	13	8	31	1.74
48204303--48204342	14	2.9	14	84	0	53	42	17	7	32	1.77
48211721--48211787	23	2.8	23	75	4	62	28	22	32	16	1.95
48211945--48212006	24	2.6	25	80	14	69	37	17	27	17	1.93
48213320--48213363	19	2.5	17	82	13	54	65	2	4	27	1.23
48213362--48213400	18	2.1	19	90	4	62	53	2	0	43	1.14
48213614--48213652	19	2.1	19	86	13	55	30	2	0	66	1.05
48219177--48219201	10	2.5	10	100	0	50	12	0	16	72	1.13
48219664--48219719	3	19.7	3	78	10	64	35	3	0	60	1.14
48219757--48219804	24	2.0	25	83	4	62	35	10	8	45	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48219751--48219805	28	2.0	28	88	0	83	34	9	9	47	1.67
48220165--48220254	46	1.9	47	86	2	128	38	10	1	50	1.43
48224348--48224387	16	2.4	16	87	8	53	82	2	12	2	0.87
48225349--48226127	44	17.8	44	68	9	306	29	19	24	26	1.98
48225309--48225545	131	1.8	131	82	4	309	29	18	24	26	1.98
48225309--48225692	175	2.2	175	89	2	585	30	19	24	26	1.98
48225482--48226152	132	5.1	132	91	0	1006	29	20	23	26	1.99
48226120--48226344	44	5.2	44	76	7	190	31	20	21	26	1.98
48226140--48226383	44	5.7	41	74	8	175	31	18	21	28	1.97
48228029--48228082	26	2.0	28	85	7	76	35	9	7	48	1.63
48228430--48228519	46	1.9	47	84	2	119	38	11	1	48	1.46
48231556--48231587	4	8.0	4	100	0	64	75	0	0	25	0.81
48238434--48238512	40	2.0	40	100	0	158	27	10	16	45	1.79
48242341--48242385	23	2.0	23	82	8	56	55	2	2	40	1.24
48242366--48242473	49	2.2	48	85	6	146	50	3	7	37	1.48
48242394--48242501	48	2.2	47	79	12	128	47	3	7	41	1.49
48242655--48242765	58	1.9	59	81	5	136	45	4	12	37	1.63
48243728--48243754	14	1.9	14	100	0	54	88	0	7	3	0.61
48249931--48249975	21	2.1	21	84	8	56	20	6	2	71	1.20
48251470--48251545	15	5.1	15	74	16	52	34	3	2	59	1.30
48251615--48251639	11	2.3	11	100	0	50	36	8	0	56	1.29
48254665--48254714	21	2.3	22	82	10	66	26	12	6	56	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48254785--48254810	12	2.2	12	100	0	52	19	7	15	57	1.62
48255480--48255513	18	1.9	17	94	5	59	82	2	14	0	0.79
48255581--48255619	7	5.7	7	81	6	53	76	2	10	10	1.10
48255580--48255619	13	2.9	14	81	3	55	77	2	10	10	1.08
48255979--48256029	26	2.0	26	100	0	102	31	27	0	41	1.56
48257127--48257966	88	9.5	88	86	2	1066	28	26	23	21	1.99
48257674--48257817	45	3.2	44	68	3	119	27	27	25	19	1.99
48257701--48257844	44	3.3	44	70	3	146	24	32	22	20	1.98
48257127--48258327	88	13.7	87	85	5	805	28	25	23	22	1.99
48257854--48258545	44	15.9	44	69	7	266	28	22	24	24	1.99
48257725--48258335	174	3.5	173	85	4	689	27	24	24	22	2.00
48257813--48258335	261	2.0	260	86	2	737	28	24	24	23	2.00
48258098--48258550	217	2.1	218	93	0	773	28	21	24	25	1.99
48258315--48258563	87	2.9	87	93	1	428	28	20	25	25	1.99
48258011--48258563	304	1.8	304	95	1	1002	28	21	24	24	1.99
48259955--48260020	15	4.7	15	71	17	52	34	3	1	60	1.21
48260471--48260508	8	5.0	8	84	9	53	39	0	0	60	0.97
48260719--48260765	13	3.8	12	78	10	51	21	2	6	70	1.20
48262929--48262975	12	3.8	12	75	13	51	48	0	2	48	1.13
48265566--48265612	3	15.7	3	90	0	76	63	2	2	31	1.18
48266751--48266796	24	1.9	24	86	8	67	28	0	10	60	1.30
48268048--48268094	20	2.3	20	92	0	76	53	10	10	25	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48271020--48271069	12	4.1	12	74	5	55	46	2	2	50	1.24
48271612--48271661	25	2.0	26	96	4	93	46	4	0	50	1.20
48277927--48277983	30	1.9	30	100	0	114	33	8	12	45	1.72
48277926--48277976	15	3.3	16	74	20	54	31	9	13	45	1.76
48277935--48277983	15	3.3	15	73	21	57	38	6	12	42	1.67
48278419--48278446	14	2.0	14	100	0	56	21	21	14	42	1.88
48280919--48280961	22	2.0	22	85	0	59	11	13	25	48	1.77
48281033--48281152	42	2.8	43	87	3	161	31	21	20	25	1.98
48281072--48281217	42	3.5	41	79	12	136	30	19	21	28	1.98
48281139--48281234	42	2.3	43	83	5	115	33	22	15	28	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221