genome.fa.s26.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  138  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42500993--42501198	44	4.7	43	81	2	205	23	27	20	27	1.99
42501380--42501416	19	1.9	19	94	0	65	59	2	10	27	1.44
42505654--42505748	46	2.1	46	95	0	172	26	29	11	32	1.91
42507074--42507185	16	6.9	16	77	15	122	33	0	17	49	1.48
42507074--42507201	41	3.1	41	85	4	170	33	0	17	49	1.47
42507074--42507225	66	2.3	66	89	2	234	35	0	16	48	1.47
42507066--42507193	25	5.1	25	85	7	129	34	0	17	47	1.48
42507155--42507225	25	2.8	25	82	0	97	38	0	15	46	1.46
42507302--42507394	34	2.8	32	75	14	89	54	2	5	37	1.35
42507374--42507403	13	2.4	13	94	5	53	60	0	0	40	0.97
42507378--42507434	23	2.5	23	88	0	69	61	0	0	38	0.96
42507710--42507751	22	1.9	22	95	0	75	38	0	14	47	1.44
42508651--42508690	12	3.3	12	85	0	53	55	12	7	25	1.63
42508640--42508701	24	2.7	24	76	14	67	51	14	8	25	1.69
42508739--42508764	12	2.2	12	100	0	52	57	11	7	23	1.59
42509382--42509437	16	3.5	16	80	7	69	23	7	3	66	1.33
42510116--42510158	22	2.0	22	85	0	59	37	44	0	18	1.50
42510226--42510252	14	1.9	14	100	0	54	44	33	0	22	1.53
42510254--42510286	14	2.3	15	94	5	59	36	33	0	30	1.58
42510665--42510984	41	7.8	41	83	2	338	29	28	23	18	1.98
42516443--42516494	27	1.9	27	88	0	77	25	15	17	42	1.88
42516452--42516960	27	19.4	27	79	6	501	19	15	21	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42516716--42516911	46	4.1	46	78	12	180	20	17	17	44	1.87
42516686--42516965	100	2.8	100	91	1	420	18	16	20	45	1.86
42516789--42516933	73	2.0	73	87	0	209	18	16	20	44	1.86
42516843--42516879	19	1.9	19	88	0	56	18	21	10	48	1.78
42520718--42520762	6	7.5	6	85	9	65	73	0	0	26	0.84
42520717--42520774	17	3.3	17	87	4	71	70	1	1	25	1.06
42522139--42522251	19	5.8	19	82	4	145	37	9	15	37	1.81
42522140--42522251	59	1.9	59	86	0	161	37	9	15	37	1.80
42523440--42523636	98	2.0	98	93	0	340	28	10	23	36	1.89
42525289--42525379	32	2.8	32	96	0	164	38	14	17	29	1.89
42533872--42534040	27	6.3	26	81	6	160	45	20	17	15	1.85
42533872--42534040	54	3.1	54	85	3	216	45	20	17	15	1.85
42533894--42534042	27	5.6	27	81	7	169	44	19	18	17	1.87
42537109--42537133	13	1.9	13	100	0	50	56	8	0	36	1.29
42540118--42540382	33	8.0	33	80	4	284	28	18	21	32	1.96
42540118--42540382	99	2.7	99	84	3	329	28	18	21	32	1.96
42543475--42543510	17	2.1	17	100	0	72	22	11	27	38	1.88
42544237--42544293	29	2.0	29	96	0	105	22	28	8	40	1.84
42546028--42546061	5	6.8	5	93	0	59	20	55	0	23	1.43
42548453--42548594	27	5.3	26	84	5	151	39	20	19	20	1.93
42554898--42555334	27	16.2	27	79	10	366	45	18	17	18	1.86
42554898--42555346	81	5.6	80	79	8	439	44	18	17	18	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42555546--42555621	26	2.8	27	76	6	73	17	22	22	38	1.93
42560435--42560488	20	2.7	20	88	0	72	16	20	3	59	1.52
42561218--42561486	138	2.0	137	82	5	337	36	27	16	20	1.93
42561854--42561893	20	2.2	19	86	13	57	37	15	5	42	1.68
42564076--42564134	30	1.9	31	86	3	84	28	20	3	47	1.66
42564657--42564685	5	5.8	5	100	0	58	37	0	0	62	0.96
42566627--42566686	27	2.3	27	88	2	86	36	15	23	25	1.93
42566759--42566820	24	2.6	24	86	0	79	22	8	20	48	1.76
42566954--42567056	26	4.0	26	83	2	118	16	22	23	37	1.93
42573092--42573229	67	2.1	67	90	0	213	22	35	23	18	1.96
42573099--42573248	67	2.2	67	86	2	203	21	36	23	19	1.95
42574799--42574850	21	2.5	20	75	3	50	50	5	3	40	1.45
42576393--42576434	20	2.2	19	87	12	59	16	21	4	57	1.58
42577948--42577989	20	2.2	19	87	12	59	16	21	4	57	1.58
42580004--42580188	79	2.3	82	83	7	229	24	27	22	24	2.00
42579985--42580188	40	5.1	40	81	8	229	24	27	22	25	2.00
42582092--42582116	2	12.5	2	100	0	50	52	0	0	48	1.00
42582717--42582754	20	1.9	20	88	0	58	15	21	7	55	1.66
42584373--42584550	27	6.6	25	82	11	131	42	23	15	19	1.89
42584373--42584872	54	9.1	54	71	11	223	42	21	16	19	1.89
42584540--42584567	14	2.0	14	100	0	56	35	42	7	14	1.73
42584514--42584591	41	1.9	41	86	0	111	41	28	16	14	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42584460--42584642	94	1.9	95	85	3	253	42	24	14	18	1.88
42584552--42584873	27	12.1	27	79	6	316	43	20	17	19	1.89
42584589--42584872	106	2.7	107	84	3	367	43	19	16	19	1.88
42587068--42587109	12	3.5	12	75	12	50	33	0	42	23	1.55
42587068--42587114	24	1.9	24	91	4	76	34	0	38	27	1.57
42587719--42588181	27	17.2	27	77	3	403	43	21	15	19	1.87
42587719--42588181	81	5.7	80	80	4	448	43	21	15	19	1.87
42594370--42594411	20	2.2	19	87	12	59	16	21	4	57	1.58
42600062--42600145	16	5.2	16	75	5	80	47	11	17	22	1.80
42600062--42600129	33	2.1	33	82	0	82	48	11	17	22	1.79
42602049--42602077	14	2.0	15	93	6	51	10	13	0	75	1.04
42605134--42605182	17	2.6	19	73	26	59	22	8	36	32	1.84
42616279--42616498	37	5.9	37	96	0	386	25	31	19	23	1.98
42616709--42617579	47	18.1	47	89	4	1238	26	30	13	30	1.93
42616709--42617557	243	3.5	243	91	4	1362	26	30	13	30	1.94
42620674--42620731	18	3.3	18	79	13	57	37	10	15	36	1.82
42626242--42626309	34	2.0	34	100	0	136	41	11	2	44	1.56
42630980--42631042	6	10.3	6	86	8	56	76	3	6	14	1.11
42630977--42631042	18	3.7	18	82	8	64	75	3	6	15	1.11
42633971--42633999	14	2.1	14	100	0	58	72	0	0	27	0.85
42636931--42636964	17	2.0	17	94	0	59	52	8	11	26	1.67
42637245--42637291	17	2.7	18	87	6	62	23	36	4	36	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42647571--42647872	39	7.6	39	88	5	380	25	27	22	25	2.00
42655623--42655844	39	5.6	39	89	5	297	24	27	22	25	2.00
42655623--42655844	78	2.8	78	88	2	329	24	27	22	25	2.00
42658867--42658910	12	3.8	12	81	6	63	38	15	4	40	1.68
42659021--42659068	24	1.9	25	83	8	62	29	18	4	47	1.67
42659860--42659889	14	2.1	15	93	6	53	23	10	0	66	1.21
42662699--42662967	54	5.0	53	81	10	140	21	18	19	39	1.92
42662729--42662967	27	8.9	27	89	0	329	20	18	20	40	1.91
42669631--42670398	389	2.0	389	90	1	1207	27	12	20	39	1.88
42670610--42670648	21	1.9	20	84	5	51	15	10	23	51	1.73
42670809--42670834	10	2.6	10	100	0	52	11	34	7	46	1.69
42673054--42673141	25	3.5	24	76	13	88	32	20	25	21	1.97
42695798--42695845	25	1.9	25	91	0	78	16	22	22	37	1.94
42695796--42695884	25	3.6	25	78	15	69	20	23	22	33	1.97
42704752--42704862	19	5.7	18	68	20	64	32	3	4	59	1.35
42704752--42704862	18	5.7	19	73	11	91	32	3	4	59	1.35
42712358--42712419	28	2.2	28	86	8	90	37	4	0	58	1.20
42713366--42713408	15	2.7	16	82	10	52	67	4	0	27	1.10
42715199--42715262	23	2.8	23	88	2	103	25	23	4	46	1.71
42715466--42715508	9	4.8	9	85	0	59	37	27	9	25	1.87
42715516--42715578	17	3.5	17	69	12	54	49	12	3	34	1.57
42715507--42715581	37	2.0	37	94	0	132	45	14	4	36	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42715713--42715790	38	2.0	39	90	2	122	17	3	25	52	1.62
42715733--42715847	52	2.2	52	93	4	198	18	1	33	46	1.59
42715823--42715877	13	3.9	13	80	17	65	14	0	45	40	1.45
42715823--42715886	30	2.1	31	94	2	112	17	0	42	40	1.49
42717129--42717502	38	10.2	38	74	8	244	37	14	21	25	1.92
42717129--42717542	35	11.4	35	75	11	257	38	14	21	26	1.92
42717165--42717547	73	5.3	72	74	9	273	38	15	19	26	1.92
42717129--42717497	110	3.4	109	74	13	337	38	15	20	25	1.92
42717165--42717548	145	2.6	146	76	8	361	38	15	19	27	1.92
42723457--42723503	24	2.0	24	86	0	67	14	21	6	57	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221