genome.fa.s26.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  149  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45306574--45306702	64	2.0	66	89	8	203	47	1	7	43	1.41
45306825--45306999	39	4.6	38	70	22	120	48	17	0	34	1.47
45306886--45307056	25	7.1	25	84	10	207	47	18	0	33	1.49
45306934--45306967	10	3.4	10	84	15	52	58	8	0	32	1.29
45306934--45306973	20	2.0	21	95	5	73	55	12	0	32	1.38
45307009--45307066	25	2.8	18	70	29	53	43	20	0	36	1.52
45307023--45307085	18	3.6	18	81	12	78	44	19	0	36	1.51
45307045--45307094	25	2.0	24	81	14	57	42	20	0	38	1.52
45306973--45307074	43	2.4	43	77	12	111	45	20	0	34	1.52
45306973--45307091	43	2.8	44	70	21	108	43	21	0	35	1.53
45307016--45307099	36	2.5	34	80	17	95	42	21	0	35	1.53
45307024--45307092	18	3.9	19	74	24	62	42	20	0	37	1.52
45306964--45307099	18	8.0	18	64	32	61	43	21	0	35	1.53
45312473--45312543	21	3.4	21	86	0	97	30	18	47	2	1.63
45312856--45313025	42	4.1	41	83	3	187	30	20	20	28	1.97
45314991--45315085	46	2.1	46	93	0	163	43	23	1	32	1.61
45325325--45325462	68	2.0	71	87	8	203	41	4	4	50	1.42
45329579--45330744	294	4.0	294	88	4	1694	34	18	21	26	1.96
45329573--45330740	582	2.0	587	90	3	1836	34	18	21	26	1.96
45347543--45347659	40	2.9	40	96	0	207	32	16	29	21	1.95
45347607--45348530	112	8.3	111	95	0	1596	25	18	28	26	1.98
45347607--45348530	223	4.1	222	95	0	1596	25	18	28	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45350204--45350404	84	2.4	84	91	4	341	32	19	18	29	1.96
45351606--45351634	11	2.7	11	94	5	51	37	10	24	27	1.88
45352974--45353295	17	18.6	17	68	24	149	44	11	1	43	1.49
45352991--45353175	40	4.6	39	88	7	241	44	10	1	43	1.48
45352986--45353177	80	2.4	80	84	13	268	44	10	1	43	1.48
45352966--45353234	53	4.6	57	72	23	222	44	10	1	43	1.48
45353070--45353323	101	2.5	101	98	0	483	43	10	1	44	1.50
45353163--45353278	40	2.7	43	89	7	184	43	11	1	43	1.50
45353468--45353613	73	2.0	73	100	0	292	50	1	6	41	1.37
45353460--45353581	39	3.3	38	68	16	119	54	1	7	36	1.38
45353669--45354033	18	19.6	18	66	27	126	46	19	0	34	1.51
45353650--45354002	25	14.1	25	83	14	410	46	19	0	33	1.51
45353687--45354047	33	10.4	34	68	22	211	45	20	0	34	1.51
45353815--45354002	26	7.3	26	93	1	310	47	20	0	31	1.51
45353994--45354047	9	5.7	10	79	20	55	42	20	0	37	1.52
45359482--45359552	21	3.4	21	86	0	97	30	18	47	2	1.63
45359866--45360034	42	4.1	40	81	6	176	30	20	20	28	1.98
45361999--45362093	46	2.1	46	93	0	163	43	23	1	32	1.61
45372301--45372438	68	2.0	71	87	8	203	41	4	4	50	1.42
45375585--45375618	14	2.5	13	86	9	50	85	8	5	0	0.75
45376563--45377741	297	4.0	296	90	2	1798	34	17	21	26	1.96
45376557--45377734	588	2.0	591	91	1	1918	34	17	21	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45382674--45382821	30	5.0	29	77	8	127	27	24	3	45	1.69
45382680--45382821	60	2.4	58	83	7	160	26	25	3	45	1.70
45383223--45383268	14	3.1	15	84	9	58	82	0	8	8	0.84
45387472--45387510	4	10.0	4	83	5	53	25	25	2	46	1.66
45395827--45396499	77	8.9	76	83	3	698	26	17	21	34	1.95
45395826--45396492	229	2.9	229	84	4	780	26	17	21	34	1.96
45396998--45397128	29	4.5	29	75	4	120	31	20	0	47	1.56
45397004--45397134	58	2.2	59	86	5	185	28	22	1	47	1.61
45397541--45397594	5	11.2	5	75	15	51	75	0	24	0	0.80
45397541--45397597	22	2.7	21	84	10	71	77	0	22	0	0.77
45397541--45397588	16	2.8	18	87	9	66	77	0	22	0	0.78
45403110--45403204	43	2.2	43	86	3	138	28	29	18	23	1.98
45403110--45403217	43	2.5	43	84	3	119	29	27	19	23	1.98
45403573--45403703	66	2.0	65	82	8	158	14	25	16	43	1.86
45403763--45403787	13	1.9	13	100	0	50	16	28	24	32	1.96
45409066--45409090	7	3.6	7	100	0	50	40	16	12	32	1.84
45409139--45409278	9	16.0	9	77	12	132	32	0	20	47	1.50
45409139--45409255	36	3.3	36	85	7	159	33	0	19	47	1.50
45409170--45409280	43	2.6	43	88	7	163	30	0	20	48	1.50
45409206--45409278	34	2.1	34	87	9	105	28	0	21	49	1.50
45409298--45409364	35	1.9	35	93	0	116	37	5	11	44	1.66
45409365--45409391	13	2.1	13	100	0	54	37	11	0	51	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45410416--45410461	23	2.1	22	84	8	58	45	8	19	26	1.79
45410502--45410532	12	2.6	12	94	0	53	19	45	0	35	1.51
45419016--45419135	41	2.9	41	79	0	141	18	25	16	40	1.91
45419283--45419345	31	2.1	31	90	3	101	41	20	12	25	1.88
45422369--45422404	18	2.1	18	89	5	56	58	0	0	41	0.98
45425200--45425239	19	2.1	19	90	0	62	57	10	0	32	1.32
45426321--45426376	29	1.9	29	82	7	69	39	3	3	53	1.36
45426810--45426903	19	4.8	19	90	5	152	37	10	15	36	1.83
45426810--45426910	40	2.7	38	88	8	152	37	9	16	35	1.82
45426842--45426926	21	4.0	22	79	14	81	37	7	16	38	1.76
45426892--45426936	23	2.0	23	86	4	65	33	4	15	46	1.66
45427449--45427500	25	2.1	25	85	7	70	32	3	5	57	1.40
45427566--45427626	33	1.9	30	83	9	77	27	1	4	65	1.22
45428066--45428107	19	2.2	20	86	4	59	33	7	9	50	1.62
45428346--45428542	98	2.0	98	94	0	349	28	8	24	38	1.85
45434139--45434193	22	2.5	22	82	5	67	40	1	7	50	1.40
45434171--45434248	23	3.2	25	78	9	81	43	0	2	53	1.14
45441734--45441858	40	3.2	40	77	11	116	19	16	24	40	1.90
45444639--45444678	14	2.8	14	80	3	53	62	0	0	37	0.95
45448747--45448784	19	2.0	19	100	0	76	26	5	10	57	1.53
45452476--45452519	11	3.7	13	77	22	51	31	4	18	45	1.69
45452482--45452526	22	2.0	22	91	0	72	33	2	15	48	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45457083--45457127	22	2.0	22	91	0	72	33	2	15	48	1.57
45458027--45458059	3	11.0	3	100	0	66	33	33	0	33	1.58
45464546--45464594	24	2.0	24	96	0	89	46	8	24	20	1.77
45473791--45473830	20	2.0	20	85	4	55	22	2	17	57	1.52
45477244--45477301	30	1.9	31	89	3	91	68	8	12	10	1.38
45477276--45477313	20	2.0	20	89	5	60	73	10	7	7	1.24
45482692--45482731	19	2.1	19	90	0	62	30	0	7	62	1.23
45483887--45483922	15	2.5	14	91	8	63	69	8	5	16	1.33
45492543--45492572	6	5.0	6	100	0	60	83	0	16	0	0.65
45501796--45501842	20	2.3	20	96	0	85	34	21	21	23	1.97
45507173--45507214	18	2.3	18	80	8	50	28	0	9	61	1.27
45507487--45507598	40	2.8	40	77	8	129	39	19	20	20	1.93
45509209--45509257	9	5.4	9	90	0	71	24	8	24	42	1.81
45510789--45510822	16	2.1	16	88	0	50	50	14	17	17	1.79
45513622--45513662	21	2.0	21	85	0	55	31	21	26	19	1.97
45515567--45515600	16	2.1	16	88	0	50	50	14	17	17	1.79
45517878--45517920	21	2.0	21	82	8	52	46	2	4	46	1.36
45520387--45520414	3	9.3	3	100	0	56	32	0	35	32	1.58
45524373--45524567	98	2.0	98	95	0	354	37	25	9	27	1.87
45525239--45525288	26	2.0	26	88	4	75	56	4	8	32	1.47
45526043--45526155	19	5.8	19	83	4	145	34	16	9	38	1.82
45526043--45526154	40	2.8	40	90	2	165	34	16	9	39	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45526331--45526843	44	11.8	43	73	16	321	27	24	20	28	1.99
45526470--45526787	173	1.8	173	85	5	446	26	25	20	27	1.99
45526328--45526926	217	2.8	217	95	0	1063	27	23	20	28	1.99
45526377--45526799	128	3.3	130	75	13	338	27	24	20	27	1.99
45526503--45526922	173	2.4	171	80	8	424	28	24	19	27	1.98
45526918--45527962	132	7.9	132	96	0	1912	23	25	21	28	1.99
45529226--45529283	7	8.3	7	77	19	50	8	1	3	86	0.76
45529226--45529280	8	6.5	8	82	13	58	9	1	3	85	0.79
45532691--45532803	19	5.8	19	83	4	154	34	15	10	39	1.81
45532691--45532802	40	2.8	40	91	2	174	34	14	10	40	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221