genome.fa.s26.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  11  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3593802--3593880	30	2.6	28	74	18	70	53	1	8	36	1.40
3593993--3594056	3	21.3	3	84	6	85	62	1	4	31	1.25
3595449--3595487	18	2.1	19	85	4	53	58	0	2	38	1.12
3601947--3602014	22	3.3	22	67	32	69	35	11	7	45	1.69
3601938--3602013	39	1.9	39	100	0	152	38	10	7	43	1.68
3609731--3609789	27	2.2	27	81	6	66	47	5	0	47	1.24
3611768--3611812	21	2.2	20	84	11	56	44	2	2	51	1.26
3611803--3611857	26	2.2	25	83	3	65	50	0	1	47	1.11
3611863--3611905	22	2.0	22	100	0	86	30	23	18	27	1.98
3619576--3619656	42	2.0	40	95	4	144	27	18	12	41	1.86
3624006--3624096	42	2.2	42	97	0	173	41	6	15	36	1.73
3625149--3625434	144	2.0	144	90	1	448	23	15	16	44	1.85
3626577--3626619	22	1.9	23	85	4	61	39	2	2	55	1.25
3626577--3626620	23	2.0	22	83	16	56	40	2	2	54	1.25
3632309--3632346	19	2.1	19	85	5	51	57	0	0	42	0.98
3639349--3639383	14	2.5	14	95	0	61	5	28	37	28	1.80
3651184--3651226	15	2.9	15	89	0	68	72	0	0	27	0.85
3662092--3662218	60	2.1	60	85	2	166	42	11	6	40	1.66
3662944--3663060	60	2.0	60	84	1	155	40	5	11	43	1.62
3666962--3666990	12	2.4	12	100	0	58	6	0	58	34	1.25
3666906--3666993	18	5.1	18	70	13	58	9	5	56	28	1.53
3670521--3670562	21	2.0	21	81	9	50	30	4	16	47	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3687353--3687381	7	4.3	7	95	4	51	58	0	41	0	0.98
3688938--3688980	18	2.3	18	81	18	52	25	0	27	46	1.53
3701939--3701972	17	2.0	17	88	0	50	64	0	0	35	0.94
3701910--3702016	41	2.6	41	86	3	142	65	0	1	31	1.10
3702000--3702024	12	2.1	12	100	0	50	92	0	0	8	0.40
3703033--3703072	21	1.9	20	85	10	53	55	2	10	32	1.47
3709497--3709574	34	2.4	34	85	8	99	48	0	0	51	1.00
3713366--3713429	32	2.0	32	85	8	87	28	0	0	71	0.86
3720111--3720144	15	2.2	16	89	5	52	50	5	14	29	1.67
3723016--3723152	67	2.0	67	91	0	220	32	18	11	36	1.88
3728076--3728109	13	2.5	14	90	4	52	50	5	23	20	1.70
3741576--3741716	70	2.0	70	98	0	273	34	13	17	34	1.89
3761908--3761933	5	5.2	5	100	0	52	38	0	0	61	0.96
3765475--3765525	24	2.1	24	85	7	68	25	0	1	72	0.95
3776135--3776168	17	2.0	17	88	11	52	29	0	0	70	0.87
3777416--3777469	17	3.1	17	76	13	56	62	3	1	31	1.23
3778175--3778249	22	3.3	23	72	17	66	48	1	2	48	1.24
3778399--3778450	21	2.5	21	81	12	70	32	28	9	28	1.89
3778559--3778611	21	2.5	21	100	0	106	18	9	43	28	1.81
3778552--3778606	21	2.3	27	64	35	68	16	10	47	25	1.79
3778875--3778926	22	2.3	22	77	9	52	50	5	1	42	1.37
3782178--3782324	64	2.3	64	97	0	285	36	8	13	41	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3782957--3782988	15	2.1	15	94	0	55	53	0	15	31	1.43
3782972--3784094	379	3.0	379	99	0	2203	24	16	17	41	1.89
3789005--3789054	24	2.0	26	84	7	68	28	4	8	60	1.43
3789256--3789289	17	2.0	17	88	11	52	64	0	0	35	0.94
3789834--3789862	14	2.1	14	100	0	58	62	24	0	13	1.32
3796875--3796996	46	2.7	46	86	0	163	31	22	19	25	1.98
3796875--3796996	23	5.3	23	83	3	138	31	22	19	25	1.98
3798877--3798918	21	2.0	21	85	0	57	45	11	4	38	1.62
3800882--3800924	21	2.0	21	82	8	52	34	2	4	58	1.32
3801858--3801918	6	10.3	6	87	3	70	63	0	29	6	1.19
3801866--3801910	23	2.0	23	86	0	63	66	0	24	8	1.20
3810749--3810776	9	3.1	9	100	0	56	89	0	0	10	0.49
3815187--3815380	50	3.9	49	76	6	167	30	21	26	22	1.98
3820489--3820736	50	4.9	51	79	9	222	24	27	20	27	1.99
3823817--3823866	20	2.5	20	78	9	50	38	0	8	54	1.30
3823989--3824023	13	2.7	13	100	0	70	37	22	14	25	1.92
3824764--3824810	21	2.3	20	85	7	60	36	2	2	59	1.21
3824851--3824924	31	2.3	33	76	9	80	50	2	4	43	1.35
3826778--3826824	13	3.6	13	75	11	51	31	10	10	46	1.73
3826774--3826824	26	2.0	26	88	0	75	29	9	11	49	1.72
3827436--3827483	21	2.3	20	82	3	51	47	6	22	22	1.73
3828499--3828571	36	2.0	36	89	0	110	35	19	4	41	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3831242--3831271	14	2.1	14	93	0	51	33	16	6	43	1.74
3836233--3836293	22	2.8	22	70	9	61	44	4	19	31	1.72
3843395--3843444	17	3.1	15	85	11	55	40	2	4	54	1.31
3845786--3846101	170	1.9	171	88	2	483	46	14	14	24	1.82
3854917--3854947	15	2.0	16	93	6	55	19	6	0	74	1.03
3855930--3855972	21	2.0	21	90	0	68	27	4	9	58	1.49
3856415--3856858	225	2.0	224	96	0	816	37	6	17	39	1.74
3860612--3860664	24	2.2	24	96	3	99	43	13	11	32	1.79
3868817--3868852	15	2.4	15	90	0	54	33	2	0	63	1.08
3871565--3871623	21	2.7	22	79	12	68	30	3	10	55	1.49
3872795--3872839	21	2.2	20	80	11	54	48	0	0	51	1.00
3873022--3873054	11	2.7	13	86	13	52	60	3	0	36	1.12
3876251--3876285	19	1.9	17	88	11	52	34	2	28	34	1.72
3886841--3886879	3	13.0	3	94	0	69	30	0	33	35	1.58
3896399--3896485	24	3.6	24	90	0	129	25	17	6	50	1.70
3897321--3897347	14	1.9	14	100	0	54	48	29	0	22	1.51
3897653--3897693	21	2.0	21	90	0	64	24	12	9	53	1.68
3906124--3906266	72	2.0	72	92	0	241	37	18	16	27	1.92
3906813--3906849	3	12.3	3	100	0	74	67	0	0	32	0.91
3907273--3907298	12	2.2	12	100	0	52	7	30	53	7	1.57
3907272--3907301	12	2.6	11	90	10	51	6	33	50	10	1.62
3908828--3908890	9	6.6	10	71	10	51	42	1	1	53	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3909041--3909101	17	3.6	16	78	10	59	45	1	3	49	1.28
3911685--3912037	21	16.4	21	80	5	283	20	60	6	11	1.53
3911677--3912037	63	5.6	63	83	8	429	21	60	6	11	1.54
3911685--3912034	108	3.2	106	84	6	409	20	61	6	11	1.52
3911685--3912034	42	8.1	42	83	6	351	20	61	6	11	1.52
3913075--3913112	20	1.9	20	84	10	51	26	23	2	47	1.65
3913874--3913907	14	2.5	13	86	9	50	23	0	2	73	0.97
3915627--3915721	21	4.6	20	77	7	91	18	63	5	12	1.47
3915627--3916096	42	11.3	42	72	11	164	20	58	8	13	1.61
3915704--3915733	3	9.7	3	92	7	51	30	66	0	3	1.07
3915721--3916095	21	17.6	21	69	10	91	20	57	8	14	1.63
3915718--3915887	24	7.6	23	65	15	70	23	53	8	14	1.68
3915718--3915928	66	3.2	66	97	0	395	23	53	9	13	1.68
3915897--3916095	21	9.5	21	80	3	150	16	61	8	13	1.55
3915914--3916143	21	10.7	21	73	13	83	17	60	7	13	1.56
3917139--3917487	190	1.8	191	86	3	506	43	6	9	39	1.64
3917511--3917543	16	2.0	17	88	5	50	42	6	3	48	1.43
3919852--3919947	24	4.0	24	90	0	147	20	28	7	43	1.78
3927054--3927102	19	2.4	21	90	6	75	14	26	16	42	1.86
3930982--3931034	20	2.6	21	79	8	56	67	3	5	22	1.28
3930991--3931043	20	2.7	19	75	16	54	69	3	5	20	1.25
3940919--3940953	18	1.9	18	88	0	52	51	14	2	31	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3944890--3945087	43	4.5	44	68	11	120	25	25	25	22	2.00
3944678--3945088	87	4.7	87	88	0	534	26	25	25	22	2.00
3945245--3945339	44	2.1	45	84	1	120	29	20	25	25	1.99
3955857--3955882	6	4.3	6	100	0	52	34	0	15	50	1.45
3960009--3960058	14	3.7	13	78	19	57	56	2	6	36	1.36
3963595--3963650	23	2.5	22	77	8	67	57	1	3	37	1.27
3976409--3977021	233	2.6	238	84	4	724	37	18	12	31	1.89
3981891--3981982	37	2.5	37	83	0	121	31	9	19	39	1.84
3986156--3986187	15	2.1	15	100	0	64	37	0	25	37	1.56
3986696--3986740	19	2.4	18	82	10	54	60	4	4	31	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221