genome.fa.s26.2.7.7.80.10.50.1000.169.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  169  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50662015--50662103	45	2.0	45	95	0	160	31	26	22	19	1.97
50663792--50663848	27	2.1	27	93	0	96	17	28	22	31	1.97
50663883--50663912	15	1.9	16	93	6	53	6	6	20	66	1.38
50663919--50663980	28	2.3	27	82	2	70	51	1	9	37	1.45
50668049--50668330	141	2.0	141	90	1	440	23	19	14	42	1.87
50670605--50670632	6	4.7	6	100	0	56	14	0	0	85	0.59
50677584--50677637	21	2.6	21	87	0	72	16	25	24	33	1.96
50681974--50682113	46	3.0	46	95	2	246	29	28	8	33	1.87
50686285--50686343	27	2.2	26	81	3	73	55	3	10	30	1.49
50686999--50687074	29	2.6	29	79	10	75	47	2	3	46	1.35
50691052--50691345	90	3.3	90	89	1	464	26	6	15	51	1.68
50694638--50694726	24	3.6	25	86	1	119	22	22	15	39	1.92
50694707--50694760	25	2.2	25	86	0	72	31	20	18	29	1.96
50696401--50696463	31	2.0	32	96	3	119	31	9	15	42	1.79
50702571--50702633	31	2.0	32	96	3	119	31	9	15	42	1.79
50703926--50703968	17	2.4	18	88	3	61	20	18	0	60	1.36
50703919--50703968	23	2.2	23	88	0	73	22	18	0	60	1.37
50703949--50703976	12	2.3	12	100	0	56	28	10	0	60	1.30
50703925--50703974	23	2.2	23	81	0	55	26	16	0	58	1.38
50703991--50704029	16	2.5	15	84	12	51	25	10	0	64	1.25
50703963--50704020	20	2.8	20	75	12	64	24	12	0	63	1.28
50704070--50704123	17	3.1	17	75	24	58	29	12	0	57	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50704105--50704207	5	18.6	5	72	18	62	32	16	0	51	1.45
50704094--50704195	39	2.6	39	86	9	138	32	16	0	50	1.45
50704132--50704211	28	2.9	28	81	7	99	31	15	0	53	1.42
50704282--50704353	21	3.6	21	80	12	73	25	13	0	61	1.33
50704533--50704614	12	6.9	11	71	16	58	28	19	0	52	1.46
50704701--50704784	23	3.6	23	79	14	75	28	11	1	58	1.41
50704727--50704828	11	9.8	11	65	19	58	28	13	1	55	1.49
50704770--50704828	29	2.0	29	90	0	91	27	13	3	55	1.54
50705216--50705288	22	3.2	22	67	18	60	38	0	9	52	1.34
50708390--50708587	107	1.9	107	86	0	288	33	23	14	27	1.94
50715322--50715387	23	2.9	23	81	0	87	33	18	27	21	1.96
50715320--50715394	23	3.3	23	75	7	71	33	20	26	20	1.97
50717016--50717930	463	2.0	463	98	0	1776	36	20	12	30	1.89
50718678--50718737	28	2.1	28	81	6	68	68	5	21	5	1.29
50731656--50731692	16	2.3	16	90	9	58	37	0	0	62	0.96
50731663--50731714	19	2.7	20	73	8	54	34	0	3	61	1.14
50732143--50732202	31	1.9	31	86	6	86	55	10	1	33	1.43
50736224--50736283	31	2.0	30	80	6	68	31	3	13	51	1.57
50736609--50736686	21	3.7	21	74	17	72	35	8	16	38	1.80
50736607--50736663	21	2.8	20	87	7	80	36	10	17	35	1.84
50743551--50744438	43	20.3	44	66	8	342	24	23	27	25	2.00
50743569--50744113	88	6.2	88	91	0	858	25	23	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50744111--50744615	88	5.8	88	87	1	696	25	22	26	25	2.00
50744576--50745080	44	11.5	44	83	3	570	30	14	24	30	1.95
50743615--50744738	568	2.0	568	83	2	1450	25	22	26	25	2.00
50744579--50745080	133	3.8	131	82	7	577	30	14	24	30	1.95
50744576--50745012	221	2.0	219	92	1	723	29	14	24	31	1.94
50745423--50745478	21	2.8	19	84	10	76	33	12	19	33	1.89
50748835--50748874	14	3.0	13	89	7	62	50	0	0	50	1.00
50750684--50750723	11	3.8	10	84	12	53	12	0	2	85	0.71
50752118--50752153	18	1.9	19	88	5	56	27	2	5	63	1.30
50752120--50752169	21	2.5	21	78	18	61	28	2	6	64	1.28
50768190--50768285	30	3.2	30	90	0	156	21	16	44	16	1.86
50776679--50776720	6	7.0	6	78	10	50	45	2	35	16	1.61
50780491--50781389	447	2.0	447	96	0	1681	40	16	13	29	1.86
50788249--50788303	28	1.9	29	92	3	94	23	29	10	36	1.89
50798136--50798239	52	2.0	52	92	0	172	29	12	18	39	1.87
50809066--50809164	49	2.0	49	92	0	162	26	24	7	42	1.80
50813170--50813199	16	1.9	16	93	6	53	26	16	3	53	1.59
50813155--50813240	43	2.0	43	88	4	129	24	23	2	50	1.61
50818021--50818066	23	2.0	23	91	0	74	54	10	23	10	1.67
50818633--50818818	87	2.2	86	81	10	229	44	14	6	34	1.71
50818886--50818995	19	5.8	20	71	10	70	64	0	3	30	1.17
50818886--50818995	9	11.7	9	68	15	53	64	0	3	30	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50818868--50819001	10	13.9	10	73	14	70	60	0	2	35	1.17
50819201--50819272	30	2.4	30	83	6	83	29	2	1	66	1.14
50819290--50819344	19	2.9	18	76	12	58	38	1	1	58	1.20
50821272--50821304	4	8.2	4	100	0	66	24	0	24	51	1.48
50832997--50833039	22	2.0	22	100	0	86	37	0	32	30	1.58
50833435--50833570	42	3.2	41	82	4	139	18	24	16	41	1.90
50833505--50833570	21	3.1	21	71	0	51	16	28	15	39	1.89
50834463--50834590	45	2.8	45	98	0	247	31	28	14	25	1.95
50834619--50834775	56	2.8	56	91	0	251	29	8	16	45	1.77
50838069--50838222	56	2.8	55	84	3	202	31	9	14	44	1.77
50838808--50838841	16	2.2	16	89	5	52	55	11	0	32	1.36
50839793--50839842	25	2.0	25	100	0	100	32	20	24	24	1.98
50846845--50846893	26	1.9	25	83	4	62	28	8	8	55	1.58
50847528--50847594	31	2.2	31	84	5	84	22	13	10	53	1.69
50855105--50855199	37	2.6	36	76	15	97	35	11	2	50	1.51
50858365--50858430	22	3.2	21	85	10	93	78	7	10	3	1.05
50858378--50858429	16	3.3	15	78	7	59	80	5	9	3	0.99
50858864--50858904	12	3.6	12	83	9	50	80	2	17	0	0.82
50860189--50860878	45	15.3	45	85	6	934	28	17	24	30	1.97
50860185--50860878	90	7.7	90	90	0	1102	28	17	24	30	1.97
50860988--50861099	50	2.2	50	82	3	136	29	19	24	26	1.98
50861017--50861118	50	2.0	50	84	0	132	28	19	25	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50862902--50862970	32	2.2	30	82	10	77	37	10	4	47	1.57
50863970--50864014	22	2.0	22	83	8	56	46	13	6	33	1.69
50866103--50866164	29	2.1	29	85	5	81	19	20	27	32	1.97
50867531--50867599	31	2.2	31	79	5	77	55	4	5	34	1.44
50876787--50876972	51	3.7	49	80	9	205	23	17	26	31	1.97
50876790--50876974	101	1.8	102	88	5	286	23	17	26	31	1.97
50880450--50880515	22	3.0	22	84	8	73	18	25	22	33	1.97
50880484--50880561	22	3.5	22	84	5	95	19	28	20	32	1.97
50887587--50887636	3	16.7	3	85	8	66	60	2	0	38	1.09
50891719--50891767	10	5.1	10	73	16	50	46	0	2	51	1.12
50891982--50892041	27	2.2	27	93	0	102	26	28	5	40	1.77
50891982--50892044	16	4.2	16	71	19	64	26	26	4	41	1.76
50902566--50902640	31	2.4	31	75	4	80	34	6	5	53	1.50
50904008--50904069	29	2.1	29	85	5	81	32	27	20	19	1.97
50905438--50905464	12	2.2	12	100	0	54	37	14	14	33	1.88
50905910--50905952	5	8.2	5	80	10	50	72	0	0	27	0.85
50914079--50914240	42	3.9	41	77	9	166	22	16	27	32	1.96
50914079--50914231	41	3.6	42	77	8	143	23	16	27	32	1.96
50916368--50916462	42	2.3	40	90	3	145	18	31	31	17	1.95
50917261--50917306	23	2.0	23	95	0	83	43	10	21	23	1.84
50917680--50917749	25	2.8	24	82	2	86	32	18	24	24	1.97
50918530--50918571	20	2.1	20	86	8	59	38	11	2	47	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50922280--50922518	50	4.8	50	79	5	225	27	20	28	23	1.99
50929854--50930091	50	4.8	50	82	5	261	26	20	28	24	1.99
50935511--50935580	26	2.7	26	95	0	122	34	21	25	18	1.96
50939942--50940008	33	2.0	33	97	0	125	35	17	2	43	1.65
50943270--50943317	18	2.7	17	78	9	60	39	16	2	41	1.60
50944229--50944263	17	2.0	18	88	5	54	11	48	28	11	1.74
50957894--50957942	23	2.2	22	82	10	55	34	4	14	46	1.63
50965618--50965661	18	2.4	18	92	0	70	40	40	2	15	1.60
50965764--50965812	9	5.4	9	87	0	71	24	8	24	42	1.81
50965764--50965812	18	2.7	18	90	0	80	24	8	24	42	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221