genome.fa.s26.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  54  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15523399--15523516	58	2.0	58	100	0	236	33	9	22	33	1.86
15524546--15524708	35	4.6	35	80	4	166	15	14	32	37	1.88
15529067--15529106	18	2.2	18	86	8	55	17	17	0	65	1.28
15538401--15538527	67	1.9	66	90	1	200	27	33	17	22	1.96
15538654--15538761	57	1.9	56	90	1	171	24	26	20	28	1.99
15542804--15543134	171	1.9	171	90	0	518	22	20	29	26	1.99
15549298--15549342	21	2.1	22	91	4	74	37	0	6	55	1.26
15551160--15551208	23	2.2	22	85	10	64	42	2	2	53	1.24
15562990--15563042	26	2.0	26	85	7	72	67	0	7	24	1.16
15563066--15563102	9	4.1	9	86	13	58	78	0	21	0	0.75
15563066--15563103	5	8.2	5	88	11	55	78	0	21	0	0.74
15563069--15563103	18	1.9	18	100	0	70	80	0	20	0	0.72
15564212--15564257	18	2.4	19	89	7	67	56	0	23	19	1.42
15584512--15584690	34	5.3	34	80	6	184	29	10	16	44	1.80
15584512--15584690	68	2.6	68	84	2	227	29	10	16	44	1.80
15584757--15584825	24	2.9	24	84	0	93	26	24	15	33	1.95
15586153--15586236	41	2.0	41	82	11	100	35	0	2	61	1.09
15586247--15586363	60	1.9	61	84	1	155	45	4	9	41	1.56
15586568--15586610	21	2.0	21	90	0	68	25	2	37	34	1.69
15586591--15586623	16	2.1	16	94	0	57	33	0	36	30	1.58
15586602--15586699	45	2.2	45	88	1	144	34	5	28	31	1.79
15586857--15586891	18	2.0	17	88	5	52	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15586814--15586887	27	2.7	27	77	8	78	51	4	0	44	1.20
15586993--15587034	17	2.5	17	85	14	52	54	0	0	45	0.99
15587000--15587034	18	2.0	17	88	5	52	54	0	0	45	0.99
15586777--15587046	143	1.9	146	93	5	476	46	3	2	47	1.34
15587200--15587246	17	2.9	16	78	18	53	46	2	6	44	1.40
15587219--15587252	17	2.0	17	94	0	59	50	0	5	44	1.26
15587285--15587478	92	2.1	91	87	5	275	46	4	4	44	1.43
15595938--15595999	22	2.9	22	85	2	81	14	27	11	46	1.78
15595945--15596006	21	2.9	22	80	4	72	16	27	12	43	1.84
15595967--15596018	21	2.4	21	80	3	59	13	28	17	40	1.87
15596974--15597024	20	2.5	20	96	0	93	39	15	11	33	1.84
15599925--15600019	27	3.6	27	89	1	138	34	20	16	28	1.94
15600513--15600549	9	4.1	9	92	0	65	45	13	10	29	1.77
15601083--15601129	17	2.8	17	79	20	62	36	2	6	55	1.37
15603635--15603685	23	2.3	22	80	12	61	29	0	5	64	1.17
15616201--15616263	26	2.4	26	69	23	60	31	7	15	44	1.76
15616276--15616331	9	6.2	9	79	8	60	26	10	25	37	1.88
15616276--15616326	18	2.8	18	87	0	75	23	11	27	37	1.90
15618593--15618680	42	2.1	42	85	4	115	21	31	21	25	1.98
15618629--15618689	21	2.9	21	75	0	59	21	31	24	22	1.98
15618626--15618709	42	2.0	42	85	0	114	20	28	25	26	1.99
15634710--15634774	21	3.2	19	78	10	58	55	1	1	41	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15635136--15635209	31	2.4	30	84	6	94	20	16	12	51	1.76
15639643--15639671	13	2.2	13	100	0	58	37	6	0	55	1.27
15640502--15640561	30	1.9	31	86	6	86	41	0	38	20	1.52
15640504--15640570	30	2.2	31	81	10	75	43	0	38	17	1.50
15644742--15644838	43	2.2	42	87	12	142	45	13	10	30	1.77
15647017--15647049	14	2.3	15	94	5	59	63	12	12	12	1.52
15649426--15649536	40	2.8	40	76	0	123	17	20	21	40	1.91
15649607--15649654	24	2.0	24	91	0	78	31	22	6	39	1.79
15652755--15652835	36	2.2	36	80	4	92	34	32	8	24	1.86
15653644--15653767	62	2.0	61	92	1	203	50	14	13	20	1.77
15654231--15654270	15	2.7	15	92	0	62	22	0	42	35	1.54
15654280--15654309	3	10.0	3	100	0	60	33	0	66	0	0.92
15655898--15656159	90	2.9	90	78	6	264	27	24	14	33	1.94
15657779--15657907	55	2.3	55	80	9	129	58	0	37	2	1.16
15658411--15658456	19	2.4	18	79	10	56	21	0	4	73	1.00
15659624--15659650	14	1.9	14	100	0	54	37	22	0	40	1.54
15660277--15660310	12	2.8	12	90	0	50	26	29	35	8	1.87
15660904--15660934	14	2.2	14	94	0	53	45	0	6	48	1.28
15663935--15663973	18	2.2	18	85	0	51	0	33	0	66	0.92
15664051--15664128	27	2.9	27	74	0	84	24	32	23	20	1.98
15666341--15666382	11	3.8	11	78	9	50	26	4	4	64	1.33
15666335--15666381	21	2.2	22	88	3	69	25	4	4	65	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15666568--15666621	26	2.0	26	82	10	65	12	7	1	77	1.05
15679079--15679269	41	4.7	41	81	4	201	20	17	27	35	1.95
15679073--15679296	41	5.7	39	81	5	166	20	17	26	34	1.96
15681990--15682033	18	2.4	19	82	17	58	47	2	22	27	1.63
15683061--15683091	10	3.2	10	90	9	55	38	19	0	41	1.51
15683058--15683090	9	3.6	9	92	8	57	42	21	0	36	1.53
15685136--15685178	22	2.0	22	95	0	77	39	4	11	44	1.62
15687316--15687349	17	2.1	16	88	5	50	58	8	8	23	1.56
15687723--15687794	21	3.1	23	81	18	80	61	4	1	33	1.24
15687748--15687798	22	2.4	22	93	3	86	66	3	0	29	1.09
15687857--15687902	23	2.0	23	83	8	58	71	0	2	26	0.97
15691695--15691738	18	2.4	18	81	11	54	47	11	15	25	1.79
15700100--15700172	29	2.6	27	79	16	76	58	1	2	36	1.21
15700096--15700171	28	2.8	27	77	15	84	57	1	2	38	1.21
15700135--15700182	21	2.3	20	76	13	53	62	2	2	33	1.18
15718918--15718942	4	6.2	4	100	0	50	24	24	0	52	1.48
15719620--15719686	34	1.9	34	85	8	91	79	5	10	4	1.05
15720101--15720145	15	3.1	15	75	18	51	71	0	17	11	1.14
15720087--15720155	21	3.3	21	81	2	86	71	0	17	11	1.15
15720088--15720145	7	8.4	7	81	14	68	72	0	17	10	1.11
15721441--15721575	43	3.1	43	65	16	107	28	25	22	23	1.99
15721380--15721795	86	4.8	86	93	0	681	29	22	23	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15721915--15722207	88	3.4	86	73	11	237	29	19	24	26	1.99
15723086--15723131	25	1.9	25	91	8	78	4	19	13	63	1.46
15734667--15734773	50	2.1	50	81	3	126	16	21	31	29	1.96
15735687--15735748	32	2.1	28	82	17	72	33	1	12	51	1.50
15740986--15741039	28	2.0	28	92	3	92	40	12	9	37	1.76
15746664--15746702	20	1.9	20	84	5	51	58	0	20	20	1.39
15747543--15747589	24	2.0	24	83	8	60	48	0	34	17	1.47
15750486--15750557	6	11.5	6	73	8	63	16	2	5	75	1.12
15754171--15754212	18	2.3	18	95	0	75	30	9	21	38	1.85
15755011--15755049	13	2.8	14	88	7	53	71	10	5	12	1.28
15755220--15755474	85	3.0	85	81	1	305	29	18	18	34	1.95
15756861--15757103	50	4.8	50	87	0	333	26	22	30	20	1.98
15761843--15761929	25	3.5	25	85	3	104	19	20	19	40	1.92
15761913--15761970	22	2.6	22	81	13	75	15	25	18	39	1.91
15761843--15761977	50	2.8	48	78	11	118	18	22	19	40	1.92
15762711--15762847	54	2.5	54	79	2	132	29	21	23	26	1.99
15762720--15762836	27	4.3	27	81	0	117	25	23	24	26	2.00
15762779--15762847	27	2.6	27	86	4	95	30	21	23	24	1.99
15762692--15762864	81	2.1	81	80	0	184	26	21	23	28	1.99
15777102--15777146	24	1.9	24	86	4	65	57	11	6	24	1.57
15779348--15779403	27	2.1	27	90	6	87	60	0	5	33	1.19
15780252--15780317	31	2.2	30	81	5	80	46	12	9	31	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15780318--15780375	18	3.2	18	74	13	57	24	6	1	67	1.25
15780318--15780415	38	2.7	36	78	17	103	27	7	2	63	1.32
15780873--15780910	18	2.1	19	85	5	51	63	0	2	34	1.09
15782822--15782900	11	7.6	11	79	15	89	58	0	1	40	1.06
15782817--15782889	38	1.9	38	94	0	128	61	0	1	36	1.05
15782805--15782966	50	3.2	50	87	7	206	64	0	1	32	1.08
15782856--15782962	41	2.6	40	86	7	144	64	0	1	33	1.04
15782916--15782941	11	2.4	11	100	0	52	53	0	7	38	1.30
15789564--15789689	43	2.9	42	81	12	148	19	19	30	31	1.96
15790335--15790383	15	3.2	15	85	8	55	30	0	20	48	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221