genome.fa.s26.2.7.7.80.10.50.1000.180.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  180  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53734737--53734770	18	1.9	17	94	5	59	70	5	11	11	1.32
53734805--53734843	21	1.9	21	89	5	62	66	0	10	23	1.22
53734801--53734861	21	3.0	20	79	11	61	67	0	9	22	1.20
53737586--53737778	90	2.1	90	91	0	305	53	14	5	26	1.63
53738497--53738810	111	2.8	110	87	4	452	31	23	21	23	1.99
53738497--53738820	112	2.9	111	87	4	465	30	22	21	25	1.99
53746958--53747017	30	2.0	31	83	9	79	20	36	1	41	1.62
53754526--53754555	13	2.3	13	94	0	51	40	40	0	20	1.52
53754696--53754763	9	7.4	9	82	9	66	23	10	23	42	1.84
53754718--53754763	18	2.6	17	90	10	74	21	10	23	43	1.84
53758092--53758141	26	1.9	26	91	0	82	52	0	4	44	1.20
53769074--53769115	19	2.2	20	82	4	50	28	7	14	50	1.69
53774929--53774970	19	2.2	20	82	4	50	28	7	14	50	1.69
53781990--53782028	18	2.2	17	86	13	53	33	0	20	46	1.51
53782254--53782351	23	4.3	23	88	2	153	21	21	25	31	1.98
53782256--53782344	45	2.0	45	93	0	151	20	22	25	31	1.98
53784702--53785412	217	3.3	217	93	0	1190	28	20	23	26	1.99
53784731--53785330	44	13.8	42	71	15	296	29	21	23	26	1.99
53787440--53787481	19	2.2	20	82	4	50	28	7	14	50	1.69
53789641--53789707	32	2.1	32	94	0	116	16	28	43	11	1.83
53793865--53793947	40	2.0	41	86	2	114	39	18	8	33	1.80
53797607--53797665	30	1.9	30	86	3	82	49	3	18	28	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53798819--53799015	42	4.7	42	76	6	157	17	19	16	46	1.85
53801030--53801076	24	2.0	24	84	16	62	51	14	0	34	1.43
53801777--53801817	19	2.0	20	86	13	57	7	21	0	70	1.11
53813594--53813626	17	2.0	17	88	5	50	63	3	0	33	1.10
53826418--53826629	44	4.6	47	69	18	151	46	3	2	47	1.35
53826418--53826676	91	2.8	91	95	0	455	46	4	3	45	1.38
53826768--53826937	37	4.7	35	67	20	100	42	1	6	48	1.39
53826929--53826982	13	4.2	13	77	18	60	44	0	0	55	0.99
53826919--53826971	23	2.3	23	96	0	97	43	0	0	56	0.99
53826920--53827009	23	5.1	18	67	28	50	42	0	1	56	1.06
53827067--53827113	14	3.3	14	82	8	51	46	0	0	53	1.00
53827261--53827350	45	2.0	45	85	6	121	36	27	5	30	1.80
53838714--53838757	21	2.1	21	100	0	88	43	31	15	9	1.79
53841781--53841812	15	2.1	15	94	0	55	31	15	0	53	1.43
53842445--53842591	64	2.3	64	97	0	285	41	13	8	36	1.76
53846158--53846210	21	2.5	21	93	0	88	30	39	9	20	1.84
53849549--53849583	14	2.5	14	95	0	61	48	0	14	37	1.44
53851132--53851224	9	9.9	9	69	18	57	63	3	3	30	1.26
53851133--53851224	19	4.9	18	74	11	87	64	3	3	29	1.25
53851133--53851224	38	2.5	37	82	10	107	64	3	3	29	1.25
53858227--53858272	3	15.3	3	100	0	92	32	32	0	34	1.58
53859233--53859266	17	2.0	17	88	0	50	67	5	14	11	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53861805--53861895	30	3.0	30	95	0	164	28	8	20	41	1.82
53862604--53862644	2	20.5	2	100	0	82	51	0	48	0	1.00
53864959--53865238	140	2.0	139	90	2	445	31	19	13	35	1.91
53868851--53868882	15	2.1	16	88	11	50	65	0	3	31	1.08
53869436--53869473	17	2.2	17	86	9	51	65	0	0	34	0.93
53869906--53870024	3	40.0	3	91	1	159	62	0	36	0	1.01
53870132--53870348	109	2.0	109	99	0	425	25	16	22	35	1.95
53871180--53871233	21	2.6	21	81	0	63	16	9	42	31	1.80
53873824--53873883	28	2.1	28	81	6	68	33	6	0	60	1.23
53876816--53876892	38	2.0	38	100	0	154	31	10	12	45	1.76
53879289--53879319	16	1.9	16	93	0	53	61	22	0	16	1.34
53887770--53887834	21	3.1	21	71	2	60	13	18	18	49	1.80
53887706--53887862	42	3.7	42	77	9	151	15	20	17	46	1.84
53890549--53890588	11	3.6	11	93	0	71	50	0	35	15	1.44
53897328--53897358	14	2.2	14	94	0	53	74	6	0	19	1.03
53903012--53903062	13	4.0	12	80	12	57	3	19	0	76	0.94
53903663--53903717	23	2.4	23	76	11	58	9	27	25	38	1.86
53904995--53905081	41	2.2	40	83	8	113	32	16	25	26	1.96
53905008--53905107	41	2.4	42	88	3	141	29	13	27	31	1.93
53912319--53912617	33	9.0	32	71	10	145	30	15	24	29	1.96
53912359--53912620	134	2.0	134	93	0	452	30	16	24	28	1.96
53912257--53912501	101	2.4	101	93	0	409	31	16	24	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53912622--53912697	24	3.2	24	86	0	98	50	3	23	22	1.66
53914704--53914852	43	3.5	43	80	1	120	28	17	22	32	1.96
53916851--53917100	50	4.9	50	88	6	344	22	29	21	26	1.99
53930789--53930829	17	2.4	17	92	8	66	34	26	14	24	1.94
53944461--53944532	4	17.2	4	78	13	74	25	1	0	73	0.91
53944441--53944532	30	3.1	30	86	13	129	23	1	1	73	0.96
53946458--53946492	15	2.4	15	90	4	54	48	0	8	42	1.33
53957308--53957334	6	4.5	6	100	0	54	0	0	51	48	1.00
53964014--53964052	21	1.9	20	85	15	53	20	15	0	64	1.30
53965465--53965546	29	2.7	31	84	9	114	37	2	6	53	1.39
53965864--53965906	18	2.6	16	85	10	59	27	2	0	69	1.00
53965878--53965930	22	2.6	21	85	8	65	35	5	0	58	1.22
53965871--53965930	10	6.1	10	78	20	56	35	5	0	60	1.19
53965888--53965935	24	2.2	20	82	14	51	39	4	0	56	1.19
53966171--53966261	8	11.0	8	71	17	62	25	3	1	70	1.09
53966171--53966268	9	10.3	9	72	16	74	25	3	1	70	1.08
53968768--53968808	19	2.2	19	86	8	57	41	0	0	58	0.98
53969407--53969455	24	2.0	24	84	7	64	57	2	4	36	1.30
53969623--53969663	17	2.4	18	80	12	50	58	0	0	41	0.98
53973859--53974069	71	3.0	71	95	0	368	33	18	18	29	1.95
53976328--53976377	22	2.3	22	79	6	57	22	12	4	62	1.46
53976549--53976650	30	3.4	31	83	5	122	29	22	3	44	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53976914--53976963	10	5.2	10	80	7	59	70	0	30	0	0.88
53976917--53976959	19	2.3	19	88	11	63	69	0	30	0	0.88
53977019--53977091	3	25.0	3	75	18	57	71	0	28	0	0.87
53977022--53977050	10	2.9	10	100	0	58	62	0	37	0	0.96
53977019--53977061	13	3.5	13	82	17	56	62	0	37	0	0.95
53977046--53977092	11	4.2	11	84	10	51	78	0	21	0	0.75
53977060--53977102	19	2.4	17	81	14	50	83	0	11	4	0.78
53977342--53977405	10	6.0	10	75	13	65	79	0	20	0	0.73
53977342--53977407	21	3.2	20	79	12	71	78	0	21	0	0.75
53977731--53977987	17	14.5	18	74	15	189	30	12	11	45	1.78
53977742--53977795	16	3.2	16	75	14	56	35	14	9	40	1.78
53977741--53977887	72	2.0	72	88	5	217	31	12	11	43	1.79
53977726--53977976	107	2.3	105	81	7	281	31	12	11	43	1.79
53977726--53977960	35	6.6	35	75	14	171	31	13	11	43	1.79
53977758--53977975	72	3.1	71	78	12	198	33	11	11	43	1.77
53977731--53978086	17	20.8	17	69	14	182	32	10	11	45	1.76
53978017--53978086	16	4.3	16	74	15	63	32	8	12	45	1.73
53978105--53978141	17	2.3	17	81	9	51	37	16	10	35	1.83
53986098--53986261	66	2.4	68	84	6	192	29	13	23	33	1.93
53986274--53986609	72	4.5	72	83	11	421	29	18	21	30	1.97
53986275--53986563	153	1.9	152	92	3	483	28	19	22	30	1.98
53986834--53986921	43	2.0	43	88	0	131	30	12	19	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53986878--53987447	76	7.6	75	89	4	737	28	16	20	35	1.94
53986880--53987552	76	8.8	76	85	7	721	28	16	20	34	1.95
53986880--53987552	153	4.4	151	83	9	728	28	16	20	34	1.95
53987588--53987841	73	3.5	72	91	3	384	33	17	18	30	1.94
53989051--53989088	16	2.4	16	90	0	58	81	2	2	13	0.90
53990956--53990998	15	2.6	17	78	10	54	16	44	18	20	1.87
54006038--54006244	69	3.0	70	92	3	330	33	18	18	29	1.95
54006475--54006518	18	2.5	17	82	7	52	65	6	2	25	1.28
54008464--54008512	22	2.3	21	79	10	55	22	12	4	61	1.48
54008670--54008772	30	3.4	31	82	6	115	29	22	3	44	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221